Wall clock time and date at job start Tue Mar 31 2020 17:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 O 1.21275 * 119.99870 * 239.99982 * 4 2 1 6 6 N 1.34777 * 119.99487 * 60.00428 * 4 2 1 7 7 C 1.46500 * 119.99750 * 180.02562 * 6 4 2 8 8 C 1.50696 * 109.47324 * 179.97438 * 7 6 4 9 9 C 1.38215 * 120.01305 * 104.99918 * 8 7 6 10 10 C 1.38224 * 120.02690 * 179.97438 * 9 8 7 11 11 C 1.38271 * 120.05041 * 0.02562 * 10 9 8 12 12 C 1.38171 * 120.02300 * 0.02562 * 11 10 9 13 13 C 1.38446 * 120.01065 * 284.72595 * 8 7 6 14 14 F 1.35095 * 120.02519 * 359.97438 * 13 8 7 15 15 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 16 16 C 1.46846 * 111.00025 * 59.20666 * 15 2 1 17 17 C 1.53032 * 109.52306 * 174.16371 * 16 15 2 18 18 C 1.53122 * 109.28147 * 59.17975 * 17 16 15 19 19 C 1.53121 * 109.15988 * 302.34956 * 18 17 16 20 20 H 1.09009 * 109.53359 * 297.68837 * 19 18 17 21 21 C 1.50699 * 109.50625 * 177.59219 * 19 18 17 22 22 H 1.08001 * 120.00134 * 240.19649 * 21 19 18 23 23 C 1.37882 * 119.99822 * 60.19397 * 21 19 18 24 24 N 1.31510 * 119.99980 * 0.02562 * 23 21 19 25 25 Si 1.86797 * 119.99941 * 180.02562 * 23 21 19 26 26 H 1.48508 * 109.47124 * 89.99892 * 25 23 21 27 27 H 1.48492 * 109.47129 * 209.99962 * 25 23 21 28 28 H 1.48500 * 109.47298 * 330.00225 * 25 23 21 29 29 C 1.46851 * 110.99445 * 294.99992 * 15 2 1 30 30 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 31 31 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 32 32 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 33 33 H 0.96996 * 120.00263 * 359.97438 * 6 4 2 34 34 H 1.09004 * 109.46923 * 300.00114 * 7 6 4 35 35 H 1.09004 * 109.47042 * 59.99701 * 7 6 4 36 36 H 1.08004 * 119.98773 * 359.97438 * 9 8 7 37 37 H 1.08005 * 119.97583 * 180.02562 * 10 9 8 38 38 H 1.08000 * 119.98561 * 179.97438 * 11 10 9 39 39 H 1.08005 * 120.00889 * 179.97438 * 12 11 10 40 40 H 1.08997 * 109.46307 * 294.17852 * 16 15 2 41 41 H 1.08999 * 109.46327 * 54.14454 * 16 15 2 42 42 H 1.08996 * 109.50692 * 299.24063 * 17 16 15 43 43 H 1.08996 * 109.53704 * 179.13728 * 17 16 15 44 44 H 1.08993 * 109.52785 * 182.43933 * 18 17 16 45 45 H 1.09005 * 109.52169 * 62.24361 * 18 17 16 46 46 H 0.97005 * 119.99804 * 179.97438 * 24 23 21 47 47 H 1.09001 * 109.45969 * 305.85170 * 29 15 2 48 48 H 1.08999 * 109.46468 * 65.82385 * 29 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4546 7 6 2.1946 -0.9409 -3.6507 8 6 1.6919 -0.2308 -4.8812 9 6 2.5512 0.5557 -5.6250 10 6 2.0906 1.2068 -6.7540 11 6 0.7698 1.0724 -7.1403 12 6 -0.0913 0.2875 -6.3976 13 6 0.3706 -0.3706 -5.2702 14 9 -0.4686 -1.1440 -4.5473 15 7 2.0197 -0.6926 1.1994 16 6 1.5334 -2.0775 1.2429 17 6 2.1776 -2.8089 2.4227 18 6 1.8222 -2.0825 3.7229 19 6 2.2965 -0.6294 3.6325 20 1 3.3811 -0.6059 3.5257 21 6 1.8982 0.1087 4.8846 22 1 1.2480 0.9687 4.8208 23 6 2.3639 -0.3140 6.1116 24 7 3.1560 -1.3609 6.1893 25 14 1.8697 0.6005 7.6637 26 1 0.6226 0.0084 8.2111 27 1 2.9547 0.4881 8.6711 28 1 1.6386 2.0318 7.3426 29 6 1.6488 0.0389 2.4176 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.1488 0.5385 -2.5436 34 1 3.2846 -0.9414 -3.6509 35 1 1.8308 -1.9685 -3.6506 36 1 3.5831 0.6617 -5.3240 37 1 2.7629 1.8209 -7.3348 38 1 0.4109 1.5819 -8.0223 39 1 -1.1231 0.1831 -6.6994 40 1 0.4501 -2.0784 1.3628 41 1 1.7963 -2.5840 0.3142 42 1 3.2602 -2.8204 2.2965 43 1 1.8052 -3.8324 2.4643 44 1 2.3144 -2.5748 4.5615 45 1 0.7423 -2.1047 3.8691 46 1 3.4839 -1.6580 7.0525 47 1 1.9956 1.0695 2.3421 48 1 0.5649 0.0280 2.5320 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595616624.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:59 Heat of formation + Delta-G solvation = -53.656936 kcal Electronic energy + Delta-G solvation = -28873.387908 eV Core-core repulsion = 24842.406135 eV Total energy + Delta-G solvation = -4030.981773 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.26636 -40.22696 -39.42842 -37.74929 -35.10377 -34.19548 -32.38215 -31.65916 -30.92907 -29.81315 -28.94247 -26.62617 -24.87289 -24.60812 -23.26895 -22.27941 -21.60790 -21.43647 -19.99631 -18.28327 -18.04625 -17.03946 -16.89117 -16.55512 -16.19313 -15.93663 -15.60411 -15.26040 -14.74775 -14.60309 -14.33661 -14.07336 -14.01913 -13.66941 -13.52841 -13.43688 -13.00502 -12.74653 -12.72566 -12.45015 -12.26403 -12.06835 -11.90105 -11.65475 -11.54441 -11.45732 -11.16499 -10.89286 -10.63265 -10.57041 -9.99174 -9.73925 -9.69835 -9.47840 -9.32986 -9.18266 -9.12564 -8.78910 -8.60406 -8.22660 -7.54323 -5.91457 -3.97887 0.58491 0.70427 2.79479 2.91407 3.33884 3.34757 3.40723 3.43368 3.79706 4.10632 4.25912 4.43124 4.46976 4.60251 4.71516 4.81966 4.84877 5.15868 5.22271 5.24955 5.30660 5.38334 5.48688 5.56607 5.64163 5.68045 5.79293 5.84758 5.90122 5.96474 5.99317 6.15697 6.24835 6.32752 6.38456 6.47408 6.51895 6.64653 6.86290 6.94241 7.05072 7.33888 7.38206 7.52807 7.76905 7.81222 7.89123 8.16327 8.25431 8.36325 8.54328 9.06312 9.65865 11.14393 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.027653 B = 0.002207 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.322440 B =12685.110833 C =12871.424504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.065 3.935 3 H 0.103 0.897 4 C 0.522 3.478 5 O -0.513 6.513 6 N -0.733 5.733 7 C 0.164 3.836 8 C -0.140 4.140 9 C -0.072 4.072 10 C -0.132 4.132 11 C -0.086 4.086 12 C -0.157 4.157 13 C 0.114 3.886 14 F -0.132 7.132 15 N -0.515 5.515 16 C 0.051 3.949 17 C -0.114 4.114 18 C -0.110 4.110 19 C 0.056 3.944 20 H 0.035 0.965 21 C -0.514 4.514 22 H 0.053 0.947 23 C 0.062 3.938 24 N -0.887 5.887 25 Si 0.890 3.110 26 H -0.282 1.282 27 H -0.287 1.287 28 H -0.275 1.275 29 C 0.067 3.933 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.398 0.602 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.136 0.864 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.018 0.982 41 H 0.084 0.916 42 H 0.060 0.940 43 H 0.043 0.957 44 H 0.089 0.911 45 H 0.028 0.972 46 H 0.259 0.741 47 H 0.058 0.942 48 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.440 4.974 -27.887 28.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.048 4.048 3 H 0.121 0.879 4 C 0.308 3.692 5 O -0.387 6.387 6 N -0.387 5.387 7 C 0.041 3.959 8 C -0.141 4.141 9 C -0.091 4.091 10 C -0.150 4.150 11 C -0.104 4.104 12 C -0.176 4.176 13 C 0.095 3.905 14 F -0.110 7.110 15 N -0.239 5.239 16 C -0.076 4.076 17 C -0.152 4.152 18 C -0.148 4.148 19 C 0.037 3.963 20 H 0.053 0.947 21 C -0.553 4.553 22 H 0.071 0.929 23 C -0.139 4.139 24 N -0.526 5.526 25 Si 0.718 3.282 26 H -0.208 1.208 27 H -0.213 1.213 28 H -0.200 1.200 29 C -0.059 4.059 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.232 0.768 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.154 0.846 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.154 0.846 40 H 0.036 0.964 41 H 0.102 0.898 42 H 0.079 0.921 43 H 0.062 0.938 44 H 0.107 0.893 45 H 0.047 0.953 46 H 0.069 0.931 47 H 0.076 0.924 48 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -4.320 4.064 -27.629 28.259 hybrid contribution -1.688 0.797 0.898 2.071 sum -6.008 4.861 -26.731 27.825 Atomic orbital electron populations 1.22419 0.95973 1.03047 1.02753 1.21631 0.93736 0.99017 0.90380 0.87888 1.20753 0.79847 0.84624 0.83965 1.90653 1.36416 1.25578 1.86034 1.46058 1.55045 1.32587 1.05029 1.20029 0.99674 0.95664 0.80561 1.20032 0.92779 1.02025 0.99304 1.21072 0.99798 0.94198 0.93983 1.21260 0.96060 1.00445 0.97273 1.21094 0.93280 0.96954 0.99065 1.21203 1.01533 0.99595 0.95291 1.17642 0.87715 0.93370 0.91819 1.91545 1.70425 1.72440 1.76628 1.62001 1.58970 1.02377 1.00512 1.22323 0.95704 0.89010 1.00599 1.21622 1.00692 0.97086 0.95776 1.21656 0.98629 0.98667 0.95885 1.18658 0.96431 0.91542 0.89693 0.94734 1.21136 1.29733 1.13092 0.91304 0.92894 1.24941 0.95020 0.95092 0.98848 1.69905 1.33458 1.24646 1.24549 0.86637 0.78066 0.80203 0.83299 1.20839 1.21288 1.20019 1.22374 0.97409 0.96855 0.89282 0.92443 0.90788 0.91811 0.76766 0.90035 0.90437 0.84581 0.85036 0.84890 0.84566 0.96388 0.89812 0.92088 0.93783 0.89254 0.95332 0.93091 0.92370 0.95888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.40 8.40 37.16 0.31 -2.09 16 2 C 0.06 0.99 2.77 -68.86 -0.19 0.80 16 3 H 0.10 1.42 8.08 -51.93 -0.42 1.00 16 4 C 0.52 7.84 6.83 -10.98 -0.08 7.76 16 5 O -0.51 -9.68 13.91 5.56 0.08 -9.60 16 6 N -0.73 -8.13 5.44 -61.47 -0.33 -8.47 16 7 C 0.16 1.66 5.49 -5.20 -0.03 1.63 16 8 C -0.14 -1.15 5.25 -104.56 -0.55 -1.70 16 9 C -0.07 -0.46 9.67 -39.59 -0.38 -0.84 16 10 C -0.13 -0.69 10.04 -39.57 -0.40 -1.08 16 11 C -0.09 -0.44 10.04 -39.59 -0.40 -0.84 16 12 C -0.16 -1.03 10.03 -39.52 -0.40 -1.43 16 13 C 0.11 0.98 7.25 -39.42 -0.29 0.69 16 14 F -0.13 -1.38 16.75 2.25 0.04 -1.34 16 15 N -0.51 -10.09 4.43 -228.07 -1.01 -11.10 16 16 C 0.05 1.01 4.48 -3.84 -0.02 0.99 16 17 C -0.11 -2.47 6.09 -26.65 -0.16 -2.63 16 18 C -0.11 -2.74 5.03 -26.61 -0.13 -2.87 16 19 C 0.06 1.43 2.26 -91.69 -0.21 1.22 16 20 H 0.03 1.00 8.14 -51.92 -0.42 0.57 16 21 C -0.51 -14.25 8.56 -34.44 -0.29 -14.54 16 22 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 23 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 24 N -0.89 -25.84 11.36 55.43 0.63 -25.21 16 25 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 29 C 0.07 1.45 4.25 -3.83 -0.02 1.43 16 30 H 0.06 0.58 7.56 -51.93 -0.39 0.19 16 31 H 0.07 1.02 6.65 -51.93 -0.35 0.67 16 32 H 0.06 0.91 6.52 -51.93 -0.34 0.57 16 33 H 0.40 3.59 7.88 -40.82 -0.32 3.27 16 34 H 0.08 0.82 7.95 -51.93 -0.41 0.40 16 35 H 0.08 0.89 8.07 -51.93 -0.42 0.47 16 36 H 0.14 0.69 8.00 -52.48 -0.42 0.27 16 37 H 0.13 0.40 8.06 -52.48 -0.42 -0.02 16 38 H 0.13 0.36 8.06 -52.49 -0.42 -0.06 16 39 H 0.14 0.69 8.06 -52.48 -0.42 0.27 16 40 H 0.02 0.35 6.62 -51.93 -0.34 0.00 16 41 H 0.08 1.68 5.32 -51.93 -0.28 1.41 16 42 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 43 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.09 2.46 6.17 -51.93 -0.32 2.14 16 45 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 47 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 48 H 0.02 0.49 6.73 -51.93 -0.35 0.14 16 LS Contribution 380.93 15.07 5.74 5.74 Total: -1.00 -32.20 380.93 -10.48 -42.68 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -7.28 Total: 2.66 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: -3.32 Total: -11.83 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: -0.72 Total: -44.78 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.08 Total: -9.60 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.20 -10.48 -42.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595616624.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.978 kcal (2) G-P(sol) polarization free energy of solvation -32.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds