Wall clock time and date at job start Tue Mar 31 2020 17:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 O 1.21275 * 119.99870 * 239.99982 * 4 2 1 6 6 N 1.34777 * 119.99487 * 60.00428 * 4 2 1 7 7 C 1.46500 * 119.99750 * 180.02562 * 6 4 2 8 8 C 1.50696 * 109.47324 * 179.97438 * 7 6 4 9 9 C 1.38215 * 120.01305 * 104.99918 * 8 7 6 10 10 C 1.38224 * 120.02690 * 179.97438 * 9 8 7 11 11 C 1.38271 * 120.05041 * 0.02562 * 10 9 8 12 12 C 1.38171 * 120.02300 * 0.02562 * 11 10 9 13 13 C 1.38446 * 120.01065 * 284.72595 * 8 7 6 14 14 F 1.35095 * 120.02519 * 359.97438 * 13 8 7 15 15 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 16 16 C 1.46846 * 111.00025 * 59.20666 * 15 2 1 17 17 C 1.53032 * 109.52306 * 174.16371 * 16 15 2 18 18 C 1.53122 * 109.28147 * 59.17975 * 17 16 15 19 19 C 1.53121 * 109.15988 * 302.34956 * 18 17 16 20 20 H 1.09009 * 109.53359 * 297.68837 * 19 18 17 21 21 C 1.50699 * 109.50625 * 177.59219 * 19 18 17 22 22 H 1.08001 * 120.00134 * 240.19649 * 21 19 18 23 23 C 1.37882 * 119.99822 * 60.19397 * 21 19 18 24 24 N 1.31510 * 119.99980 * 0.02562 * 23 21 19 25 25 Si 1.86797 * 119.99941 * 180.02562 * 23 21 19 26 26 H 1.48508 * 109.47124 * 89.99892 * 25 23 21 27 27 H 1.48492 * 109.47129 * 209.99962 * 25 23 21 28 28 H 1.48500 * 109.47298 * 330.00225 * 25 23 21 29 29 C 1.46851 * 110.99445 * 294.99992 * 15 2 1 30 30 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 31 31 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 32 32 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 33 33 H 0.96996 * 120.00263 * 359.97438 * 6 4 2 34 34 H 1.09004 * 109.46923 * 300.00114 * 7 6 4 35 35 H 1.09004 * 109.47042 * 59.99701 * 7 6 4 36 36 H 1.08004 * 119.98773 * 359.97438 * 9 8 7 37 37 H 1.08005 * 119.97583 * 180.02562 * 10 9 8 38 38 H 1.08000 * 119.98561 * 179.97438 * 11 10 9 39 39 H 1.08005 * 120.00889 * 179.97438 * 12 11 10 40 40 H 1.08997 * 109.46307 * 294.17852 * 16 15 2 41 41 H 1.08999 * 109.46327 * 54.14454 * 16 15 2 42 42 H 1.08996 * 109.50692 * 299.24063 * 17 16 15 43 43 H 1.08996 * 109.53704 * 179.13728 * 17 16 15 44 44 H 1.08993 * 109.52785 * 182.43933 * 18 17 16 45 45 H 1.09005 * 109.52169 * 62.24361 * 18 17 16 46 46 H 0.97005 * 119.99804 * 179.97438 * 24 23 21 47 47 H 1.09001 * 109.45969 * 305.85170 * 29 15 2 48 48 H 1.08999 * 109.46468 * 65.82385 * 29 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4546 7 6 2.1946 -0.9409 -3.6507 8 6 1.6919 -0.2308 -4.8812 9 6 2.5512 0.5557 -5.6250 10 6 2.0906 1.2068 -6.7540 11 6 0.7698 1.0724 -7.1403 12 6 -0.0913 0.2875 -6.3976 13 6 0.3706 -0.3706 -5.2702 14 9 -0.4686 -1.1440 -4.5473 15 7 2.0197 -0.6926 1.1994 16 6 1.5334 -2.0775 1.2429 17 6 2.1776 -2.8089 2.4227 18 6 1.8222 -2.0825 3.7229 19 6 2.2965 -0.6294 3.6325 20 1 3.3811 -0.6059 3.5257 21 6 1.8982 0.1087 4.8846 22 1 1.2480 0.9687 4.8208 23 6 2.3639 -0.3140 6.1116 24 7 3.1560 -1.3609 6.1893 25 14 1.8697 0.6005 7.6637 26 1 0.6226 0.0084 8.2111 27 1 2.9547 0.4881 8.6711 28 1 1.6386 2.0318 7.3426 29 6 1.6488 0.0389 2.4176 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.1488 0.5385 -2.5436 34 1 3.2846 -0.9414 -3.6509 35 1 1.8308 -1.9685 -3.6506 36 1 3.5831 0.6617 -5.3240 37 1 2.7629 1.8209 -7.3348 38 1 0.4109 1.5819 -8.0223 39 1 -1.1231 0.1831 -6.6994 40 1 0.4501 -2.0784 1.3628 41 1 1.7963 -2.5840 0.3142 42 1 3.2602 -2.8204 2.2965 43 1 1.8052 -3.8324 2.4643 44 1 2.3144 -2.5748 4.5615 45 1 0.7423 -2.1047 3.8691 46 1 3.4839 -1.6580 7.0525 47 1 1.9956 1.0695 2.3421 48 1 0.5649 0.0280 2.5320 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595616624.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:58 Heat of formation + Delta-G solvation = -73.753263 kcal Electronic energy + Delta-G solvation = -28874.259350 eV Core-core repulsion = 24842.406135 eV Total energy + Delta-G solvation = -4031.853215 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -49.93663 -41.42811 -40.09156 -39.22074 -36.12046 -35.89298 -34.10095 -32.55717 -31.68154 -31.44218 -30.34574 -27.44655 -26.91370 -25.89610 -23.76107 -23.53157 -23.29984 -22.44232 -21.26144 -20.06741 -18.74340 -18.42528 -17.96235 -17.51658 -17.39037 -16.75607 -16.62834 -16.41071 -16.27391 -15.82107 -15.48144 -15.41341 -15.08277 -14.87419 -14.75352 -14.38344 -14.29634 -14.04136 -13.91165 -13.76914 -13.34322 -13.29280 -13.24106 -12.93179 -12.80802 -12.72989 -12.53641 -12.48500 -12.31791 -11.97053 -11.76215 -11.62521 -11.42554 -11.10007 -10.67856 -10.57842 -10.33634 -10.16055 -9.96123 -9.66908 -9.07023 -8.05431 -6.20226 0.06967 0.23425 1.42957 1.43281 1.53833 1.61461 2.06832 2.44806 2.69091 3.11537 3.21414 3.26938 3.46719 3.74228 3.77608 4.01075 4.06476 4.09438 4.26287 4.28011 4.32062 4.37759 4.40916 4.55186 4.58417 4.63864 4.64989 4.69409 4.83023 4.87649 4.90262 4.99804 5.09318 5.12112 5.16738 5.19418 5.22195 5.34616 5.38554 5.41197 5.46531 5.52806 5.65319 5.91920 5.96569 6.12127 6.21335 6.22637 6.46665 6.54521 6.93041 7.24202 7.47666 8.99557 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.027653 B = 0.002207 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.322440 B =12685.110833 C =12871.424504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.062 3.938 3 H 0.123 0.877 4 C 0.524 3.476 5 O -0.558 6.558 6 N -0.713 5.713 7 C 0.166 3.834 8 C -0.150 4.150 9 C -0.076 4.076 10 C -0.127 4.127 11 C -0.080 4.080 12 C -0.161 4.161 13 C 0.090 3.910 14 F -0.150 7.150 15 N -0.533 5.533 16 C 0.062 3.938 17 C -0.108 4.108 18 C -0.101 4.101 19 C 0.052 3.948 20 H -0.009 1.009 21 C -0.531 4.531 22 H 0.057 0.943 23 C 0.010 3.990 24 N -0.918 5.918 25 Si 0.958 3.042 26 H -0.276 1.276 27 H -0.286 1.286 28 H -0.265 1.265 29 C 0.083 3.917 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.411 0.589 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.148 0.852 37 H 0.158 0.842 38 H 0.162 0.838 39 H 0.149 0.851 40 H 0.027 0.973 41 H 0.085 0.915 42 H 0.040 0.960 43 H 0.062 0.938 44 H 0.056 0.944 45 H 0.026 0.974 46 H 0.259 0.741 47 H 0.064 0.936 48 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.786 7.247 -30.216 31.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.049 4.049 3 H 0.140 0.860 4 C 0.310 3.690 5 O -0.436 6.436 6 N -0.366 5.366 7 C 0.043 3.957 8 C -0.151 4.151 9 C -0.094 4.094 10 C -0.145 4.145 11 C -0.098 4.098 12 C -0.180 4.180 13 C 0.071 3.929 14 F -0.129 7.129 15 N -0.258 5.258 16 C -0.065 4.065 17 C -0.146 4.146 18 C -0.139 4.139 19 C 0.033 3.967 20 H 0.010 0.990 21 C -0.570 4.570 22 H 0.076 0.924 23 C -0.189 4.189 24 N -0.558 5.558 25 Si 0.783 3.217 26 H -0.202 1.202 27 H -0.212 1.212 28 H -0.189 1.189 29 C -0.044 4.044 30 H 0.110 0.890 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.248 0.752 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.165 0.835 37 H 0.176 0.824 38 H 0.180 0.820 39 H 0.166 0.834 40 H 0.045 0.955 41 H 0.103 0.897 42 H 0.059 0.941 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.044 0.956 46 H 0.068 0.932 47 H 0.083 0.917 48 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -5.697 6.376 -30.007 31.201 hybrid contribution -1.227 0.125 1.484 1.929 sum -6.924 6.501 -28.523 30.062 Atomic orbital electron populations 1.22341 0.93919 1.02774 1.04278 1.21750 0.95330 0.99325 0.88534 0.85983 1.20704 0.79348 0.84014 0.84912 1.90637 1.38671 1.27572 1.86711 1.45883 1.54021 1.32457 1.04266 1.20002 0.99602 0.95056 0.81022 1.19871 0.93113 1.03147 0.98973 1.21278 1.00117 0.93793 0.94235 1.21616 0.96564 0.99732 0.96601 1.21486 0.93001 0.95907 0.99369 1.21443 1.02554 0.99344 0.94645 1.17928 0.87789 0.94352 0.92871 1.91495 1.70963 1.73170 1.77239 1.61835 1.60133 1.02385 1.01398 1.22164 0.95841 0.89181 0.99358 1.21539 0.99669 0.98183 0.95220 1.21457 0.97779 0.98386 0.96292 1.18593 0.94106 0.92501 0.91510 0.99037 1.21507 1.29757 1.13381 0.92352 0.92432 1.25792 0.94991 0.95894 1.02208 1.70069 1.34455 1.26041 1.25214 0.85566 0.77693 0.79306 0.79124 1.20199 1.21175 1.18917 1.22032 0.97111 0.96684 0.88533 0.89032 0.91117 0.92947 0.75235 0.90049 0.92236 0.83455 0.82389 0.82003 0.83360 0.95474 0.89672 0.94100 0.91963 0.92530 0.95566 0.93172 0.91721 0.95275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.19 8.40 71.98 0.60 -3.59 16 2 C 0.06 1.81 2.77 44.17 0.12 1.94 16 3 H 0.12 3.09 8.08 -2.39 -0.02 3.07 16 4 C 0.52 15.37 6.83 87.66 0.60 15.97 16 5 O -0.56 -21.30 13.91 -3.01 -0.04 -21.34 16 6 N -0.71 -15.01 5.44 -466.78 -2.54 -17.55 16 7 C 0.17 3.31 5.49 85.63 0.47 3.78 16 8 C -0.15 -2.27 5.25 -19.82 -0.10 -2.37 16 9 C -0.08 -0.80 9.67 22.26 0.22 -0.58 16 10 C -0.13 -0.88 10.04 22.27 0.22 -0.65 16 11 C -0.08 -0.54 10.04 22.26 0.22 -0.32 16 12 C -0.16 -1.76 10.03 22.31 0.22 -1.53 16 13 C 0.09 1.44 7.25 22.38 0.16 1.60 16 14 F -0.15 -3.09 16.75 44.97 0.75 -2.34 16 15 N -0.53 -20.86 4.43 -875.49 -3.88 -24.74 16 16 C 0.06 2.47 4.48 86.32 0.39 2.85 16 17 C -0.11 -4.83 6.09 30.65 0.19 -4.64 16 18 C -0.10 -5.18 5.03 30.68 0.15 -5.03 16 19 C 0.05 2.75 2.26 -11.49 -0.03 2.72 16 20 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 21 C -0.53 -29.90 8.56 25.60 0.22 -29.68 16 22 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 23 C 0.01 0.54 5.30 84.66 0.45 0.99 16 24 N -0.92 -55.19 11.36 21.45 0.24 -54.94 16 25 Si 0.96 44.39 29.54 68.60 2.03 46.42 16 26 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 27 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 28 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 29 C 0.08 3.57 4.25 86.33 0.37 3.94 16 30 H 0.09 1.57 7.56 -2.39 -0.02 1.55 16 31 H 0.07 1.78 6.65 -2.39 -0.02 1.76 16 32 H 0.05 1.40 6.52 -2.38 -0.02 1.38 16 33 H 0.41 6.55 7.88 -92.71 -0.73 5.82 16 34 H 0.08 1.62 7.95 -2.39 -0.02 1.60 16 35 H 0.06 1.41 8.07 -2.38 -0.02 1.39 16 36 H 0.15 1.16 8.00 -2.91 -0.02 1.13 16 37 H 0.16 0.26 8.06 -2.91 -0.02 0.24 16 38 H 0.16 0.15 8.06 -2.91 -0.02 0.13 16 39 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 40 H 0.03 1.03 6.62 -2.39 -0.02 1.01 16 41 H 0.09 3.44 5.32 -2.39 -0.01 3.43 16 42 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 44 H 0.06 3.26 6.17 -2.39 -0.01 3.25 16 45 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 46 H 0.26 14.81 8.31 -92.70 -0.77 14.04 16 47 H 0.06 2.65 8.08 -2.39 -0.02 2.63 16 48 H 0.03 1.21 6.73 -2.39 -0.02 1.19 16 Total: -1.00 -72.55 380.93 1.28 -71.27 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: 0.24 Total: 17.82 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: 4.48 Total: -14.60 kcal Atomic # 7 Polarization: -91.05 SS G_CDS: -6.18 Total: -97.23 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.04 Total: -21.34 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.75 Total: -2.34 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -72.55 1.28 -71.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595616624.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.481 kcal (2) G-P(sol) polarization free energy of solvation -72.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds