Wall clock time and date at job start Tue Mar 31 2020 18:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46903 * 111.00227 * 2 1 4 4 C 1.46899 * 111.00057 * 123.95076 * 2 1 3 5 5 C 1.53008 * 109.47190 * 66.04644 * 4 2 1 6 6 C 1.52997 * 109.47219 * 180.02562 * 5 4 2 7 7 N 1.46502 * 109.46815 * 180.02562 * 6 5 4 8 8 C 1.46500 * 119.99856 * 269.99366 * 7 6 5 9 9 C 1.50692 * 109.47403 * 274.56319 * 8 7 6 10 10 H 1.08007 * 119.99904 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00158 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00498 * 179.97438 * 11 9 8 13 13 Si 1.86805 * 119.99911 * 0.02562 * 11 9 8 14 14 H 1.48494 * 109.47471 * 89.99823 * 13 11 9 15 15 H 1.48504 * 109.47075 * 210.00226 * 13 11 9 16 16 H 1.48497 * 109.46985 * 329.99661 * 13 11 9 17 17 C 1.34777 * 119.99905 * 90.00055 * 7 6 5 18 18 O 1.21281 * 119.99892 * 4.07695 * 17 7 6 19 19 C 1.50700 * 119.99761 * 183.79850 * 17 7 6 20 20 F 1.39898 * 109.47199 * 319.75332 * 19 17 7 21 21 F 1.39906 * 109.46873 * 79.75189 * 19 17 7 22 22 C 1.53003 * 109.46992 * 199.74867 * 19 17 7 23 23 O 1.42905 * 112.84748 * 54.12701 * 22 19 17 24 24 C 1.53778 * 113.61829 * 282.81869 * 22 19 17 25 25 C 1.53783 * 87.08079 * 220.01988 * 24 22 19 26 26 C 1.53780 * 113.61238 * 185.31811 * 22 19 17 27 27 H 1.08992 * 109.47261 * 296.05067 * 1 2 3 28 28 H 1.08998 * 109.46858 * 56.05092 * 1 2 3 29 29 H 1.09001 * 109.46749 * 176.04494 * 1 2 3 30 30 H 1.08995 * 109.47510 * 183.95436 * 3 2 1 31 31 H 1.09007 * 109.46736 * 303.95377 * 3 2 1 32 32 H 1.08994 * 109.47047 * 63.94618 * 3 2 1 33 33 H 1.09002 * 109.47266 * 306.04704 * 4 2 1 34 34 H 1.08996 * 109.47282 * 186.04460 * 4 2 1 35 35 H 1.09002 * 109.46967 * 59.99877 * 5 4 2 36 36 H 1.09000 * 109.46722 * 300.00562 * 5 4 2 37 37 H 1.08997 * 109.47024 * 60.00015 * 6 5 4 38 38 H 1.09005 * 109.46804 * 299.99744 * 6 5 4 39 39 H 1.08997 * 109.46919 * 34.56443 * 8 7 6 40 40 H 1.08999 * 109.46452 * 154.55839 * 8 7 6 41 41 H 0.96998 * 120.00211 * 180.02562 * 12 11 9 42 42 H 0.96694 * 113.99723 * 304.61604 * 23 22 19 43 43 H 1.08997 * 113.61078 * 334.57081 * 24 22 19 44 44 H 1.09001 * 113.61315 * 105.47322 * 24 22 19 45 45 H 1.08997 * 113.61596 * 270.88297 * 25 24 22 46 46 H 1.08996 * 113.61295 * 139.98021 * 25 24 22 47 47 H 1.09004 * 113.61456 * 254.53624 * 26 22 19 48 48 H 1.09002 * 113.61501 * 25.34983 * 26 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.6315 -2.2426 0.9705 6 6 2.1792 -3.0402 2.1556 7 7 1.8312 -4.4542 1.9952 8 6 0.5743 -4.9664 2.5467 9 6 0.7751 -5.3387 3.9930 10 1 1.7425 -5.2075 4.4551 11 6 -0.2756 -5.8480 4.7261 12 7 -0.1003 -6.1734 5.9882 13 14 -1.9482 -6.0770 3.9263 14 1 -2.0304 -7.4348 3.3307 15 1 -3.0122 -5.9203 4.9503 16 1 -2.1316 -5.0578 2.8620 17 6 2.6674 -5.2839 1.3403 18 8 3.7409 -4.8777 0.9484 19 6 2.2711 -6.7180 1.1004 20 9 1.6329 -7.2221 2.2387 21 9 1.3985 -6.7843 0.0088 22 6 3.5208 -7.5500 0.8056 23 8 4.5217 -7.4256 1.8180 24 6 4.0605 -7.3663 -0.6226 25 6 4.3318 -8.8800 -0.6304 26 6 3.2141 -9.0062 0.4182 27 1 -0.3633 0.4513 0.9232 28 1 -0.3633 0.5739 -0.8525 29 1 -0.3633 -1.0252 -0.0709 30 1 3.0828 1.3433 -0.0709 31 1 1.5898 1.9163 -0.8525 32 1 1.7044 1.8724 0.9232 33 1 1.5611 -0.3871 2.0628 34 1 3.0797 -0.6611 1.1756 35 1 2.0658 -2.6214 0.0452 36 1 0.5472 -2.3474 0.9323 37 1 1.7445 -2.6613 3.0805 38 1 3.2635 -2.9354 2.1940 39 1 -0.1948 -4.1976 2.4729 40 1 0.2630 -5.8468 1.9846 41 1 -0.8395 -6.5321 6.5039 42 1 4.7911 -6.5140 1.9948 43 1 3.3008 -7.0552 -1.3397 44 1 4.9651 -6.7603 -0.6730 45 1 5.3180 -9.1487 -0.2518 46 1 4.0963 -9.3609 -1.5797 47 1 3.4353 -9.7241 1.2081 48 1 2.2224 -9.1437 -0.0130 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764539071.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:53 Heat of formation + Delta-G solvation = -137.968822 kcal Electronic energy + Delta-G solvation = -31720.533258 eV Core-core repulsion = 27255.126222 eV Total energy + Delta-G solvation = -4465.407035 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.80992 -46.65848 -39.82697 -38.87441 -37.68440 -35.63356 -34.47916 -32.87247 -31.80408 -28.78352 -28.15365 -27.67943 -26.19101 -25.74197 -23.85422 -22.77479 -22.18057 -20.81227 -19.66965 -19.38915 -17.98468 -17.27026 -17.08311 -16.86677 -16.14073 -15.70471 -15.61881 -15.22390 -14.97456 -14.91704 -14.44117 -14.28107 -14.13653 -13.90005 -13.57978 -13.53193 -12.98786 -12.93897 -12.69385 -12.53372 -12.41268 -12.31893 -12.28456 -12.09864 -11.93499 -11.78482 -11.65385 -11.39050 -11.30976 -11.22848 -10.99769 -10.84543 -10.67284 -10.50865 -10.40760 -10.28574 -9.87408 -9.64831 -9.21320 -8.69538 -8.45407 -8.09621 -6.19589 -4.20559 2.54295 3.03957 3.20584 3.25882 3.29088 3.84853 3.91537 4.01202 4.25543 4.28828 4.41204 4.53787 4.78597 4.94857 5.02617 5.04445 5.10403 5.15984 5.28141 5.35105 5.39709 5.42680 5.50093 5.52901 5.61859 5.70731 5.71308 5.73226 5.75043 5.86340 5.94575 5.97953 6.06254 6.12595 6.19193 6.28510 6.33969 6.42682 6.56732 6.92538 6.93815 6.98920 7.39977 7.62829 7.73769 8.18869 8.37154 8.83157 9.38706 10.93113 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.008301 B = 0.005383 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3372.083322 B = 5200.486704 C = 7573.550376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.549 5.549 3 C 0.025 3.975 4 C 0.059 3.941 5 C -0.130 4.130 6 C 0.117 3.883 7 N -0.561 5.561 8 C 0.196 3.804 9 C -0.530 4.530 10 H 0.079 0.921 11 C 0.082 3.918 12 N -0.889 5.889 13 Si 0.866 3.134 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.265 1.265 17 C 0.486 3.514 18 O -0.539 6.539 19 C 0.261 3.739 20 F -0.148 7.148 21 F -0.185 7.185 22 C 0.089 3.911 23 O -0.520 6.520 24 C -0.149 4.149 25 C -0.131 4.131 26 C -0.123 4.123 27 H 0.026 0.974 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.024 0.976 33 H 0.038 0.962 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.035 0.965 40 H 0.040 0.960 41 H 0.266 0.734 42 H 0.389 0.611 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.073 0.927 47 H 0.086 0.914 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.131 5.180 -13.001 14.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.272 5.272 3 C -0.123 4.123 4 C -0.069 4.069 5 C -0.169 4.169 6 C -0.006 4.006 7 N -0.288 5.288 8 C 0.075 3.925 9 C -0.568 4.568 10 H 0.097 0.903 11 C -0.122 4.122 12 N -0.526 5.526 13 Si 0.692 3.308 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.190 1.190 17 C 0.269 3.731 18 O -0.419 6.419 19 C 0.221 3.779 20 F -0.128 7.128 21 F -0.166 7.166 22 C 0.045 3.955 23 O -0.329 6.329 24 C -0.187 4.187 25 C -0.168 4.168 26 C -0.160 4.160 27 H 0.044 0.956 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.043 0.957 33 H 0.056 0.944 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.076 0.924 42 H 0.240 0.760 43 H 0.111 0.889 44 H 0.104 0.896 45 H 0.105 0.895 46 H 0.091 0.909 47 H 0.105 0.895 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.614 4.468 -13.405 14.864 hybrid contribution -1.628 0.850 0.670 1.955 sum 2.986 5.318 -12.735 14.121 Atomic orbital electron populations 1.22447 0.87418 1.02684 1.00249 1.61968 1.08101 1.13568 1.43597 1.22369 1.00768 0.88910 1.00289 1.22055 1.00262 0.93478 0.91133 1.21948 1.01659 0.93697 0.99600 1.21413 1.01305 0.79602 0.98305 1.48006 1.21633 1.08547 1.50631 1.20241 0.80732 0.95332 0.96160 1.21124 0.99302 1.43646 0.92723 0.90300 1.24761 0.98457 0.94401 0.94595 1.69873 1.32345 1.42725 1.07684 0.87006 0.84472 0.79620 0.79670 1.19591 1.20799 1.19010 1.20662 0.85392 0.87006 0.80016 1.90640 1.22130 1.76254 1.52862 1.21883 0.87567 0.93648 0.74818 1.93270 1.82402 1.88279 1.48858 1.92995 1.71589 1.97102 1.54935 1.22914 0.85967 0.96731 0.89873 1.86449 1.55783 1.33936 1.56692 1.23513 1.02595 0.97468 0.95088 1.22744 0.99102 0.95985 0.98963 1.23045 1.00218 0.93478 0.99264 0.95553 0.91659 0.90885 0.91367 0.91564 0.95735 0.94425 0.90533 0.90937 0.91613 0.89396 0.90086 0.94704 0.94253 0.92360 0.75991 0.88852 0.89649 0.89482 0.90871 0.89517 0.88241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.32 60.06 0.56 0.78 16 2 N -0.55 -6.57 5.02 -251.26 -1.26 -7.83 16 3 C 0.03 0.24 9.57 60.07 0.57 0.81 16 4 C 0.06 0.74 4.96 -3.82 -0.02 0.72 16 5 C -0.13 -1.91 5.46 -26.73 -0.15 -2.05 16 6 C 0.12 1.97 5.46 -4.04 -0.02 1.95 16 7 N -0.56 -11.25 2.46 -175.07 -0.43 -11.68 16 8 C 0.20 4.44 3.74 -5.20 -0.02 4.42 16 9 C -0.53 -14.12 8.65 -34.45 -0.30 -14.42 16 10 H 0.08 2.33 8.06 -52.48 -0.42 1.91 16 11 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 12 N -0.89 -26.17 13.96 55.43 0.77 -25.39 16 13 Si 0.87 20.43 27.47 -169.99 -4.67 15.76 16 14 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.27 -5.89 6.54 56.52 0.37 -5.52 16 17 C 0.49 9.59 6.69 -10.99 -0.07 9.51 16 18 O -0.54 -10.38 13.76 -5.80 -0.08 -10.46 16 19 C 0.26 5.02 1.05 -27.88 -0.03 5.00 16 20 F -0.15 -3.35 13.01 2.25 0.03 -3.32 16 21 F -0.19 -3.38 15.10 2.25 0.03 -3.35 16 22 C 0.09 1.48 0.79 -89.81 -0.07 1.41 16 23 O -0.52 -9.19 13.35 -46.59 -0.62 -9.81 16 24 C -0.15 -2.07 6.64 -25.92 -0.17 -2.25 16 25 C -0.13 -1.56 8.02 -25.92 -0.21 -1.77 16 26 C -0.12 -1.75 7.33 -25.92 -0.19 -1.94 16 27 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 29 H 0.07 0.85 6.47 -51.93 -0.34 0.52 16 30 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 31 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 32 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.04 0.46 8.12 -51.93 -0.42 0.04 16 34 H 0.08 0.91 8.06 -51.93 -0.42 0.49 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.07 0.99 6.55 -51.93 -0.34 0.65 16 37 H 0.09 1.50 8.07 -51.93 -0.42 1.08 16 38 H 0.08 1.34 7.37 -51.93 -0.38 0.95 16 39 H 0.04 0.77 7.17 -51.93 -0.37 0.40 16 40 H 0.04 0.92 4.82 -51.93 -0.25 0.67 16 41 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.39 6.58 7.02 45.56 0.32 6.90 16 43 H 0.09 1.27 7.29 -51.93 -0.38 0.89 16 44 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 48 H 0.10 1.33 7.69 -51.93 -0.40 0.93 16 LS Contribution 384.39 15.07 5.79 5.79 Total: -1.00 -29.99 384.39 -7.86 -37.85 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -7.21 Total: 8.11 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -0.21 Total: 4.33 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: -0.92 Total: -44.90 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.70 Total: -20.27 kcal Atomic # 9 Polarization: -6.73 SS G_CDS: 0.06 Total: -6.66 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.67 Total: 15.76 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.99 -7.86 -37.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764539071.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.123 kcal (2) G-P(sol) polarization free energy of solvation -29.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds