Wall clock time and date at job start Tue Mar 31 2020 18:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46903 * 111.00227 * 2 1 4 4 C 1.46899 * 111.00057 * 123.95076 * 2 1 3 5 5 C 1.53008 * 109.47190 * 66.04644 * 4 2 1 6 6 C 1.52997 * 109.47219 * 180.02562 * 5 4 2 7 7 N 1.46502 * 109.46815 * 180.02562 * 6 5 4 8 8 C 1.46500 * 119.99856 * 269.99366 * 7 6 5 9 9 C 1.50692 * 109.47403 * 274.56319 * 8 7 6 10 10 H 1.08007 * 119.99904 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00158 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00498 * 179.97438 * 11 9 8 13 13 Si 1.86805 * 119.99911 * 0.02562 * 11 9 8 14 14 H 1.48494 * 109.47471 * 89.99823 * 13 11 9 15 15 H 1.48504 * 109.47075 * 210.00226 * 13 11 9 16 16 H 1.48497 * 109.46985 * 329.99661 * 13 11 9 17 17 C 1.34777 * 119.99905 * 90.00055 * 7 6 5 18 18 O 1.21281 * 119.99892 * 4.07695 * 17 7 6 19 19 C 1.50700 * 119.99761 * 183.79850 * 17 7 6 20 20 F 1.39898 * 109.47199 * 319.75332 * 19 17 7 21 21 F 1.39906 * 109.46873 * 79.75189 * 19 17 7 22 22 C 1.53003 * 109.46992 * 199.74867 * 19 17 7 23 23 O 1.42905 * 112.84748 * 54.12701 * 22 19 17 24 24 C 1.53778 * 113.61829 * 282.81869 * 22 19 17 25 25 C 1.53783 * 87.08079 * 220.01988 * 24 22 19 26 26 C 1.53780 * 113.61238 * 185.31811 * 22 19 17 27 27 H 1.08992 * 109.47261 * 296.05067 * 1 2 3 28 28 H 1.08998 * 109.46858 * 56.05092 * 1 2 3 29 29 H 1.09001 * 109.46749 * 176.04494 * 1 2 3 30 30 H 1.08995 * 109.47510 * 183.95436 * 3 2 1 31 31 H 1.09007 * 109.46736 * 303.95377 * 3 2 1 32 32 H 1.08994 * 109.47047 * 63.94618 * 3 2 1 33 33 H 1.09002 * 109.47266 * 306.04704 * 4 2 1 34 34 H 1.08996 * 109.47282 * 186.04460 * 4 2 1 35 35 H 1.09002 * 109.46967 * 59.99877 * 5 4 2 36 36 H 1.09000 * 109.46722 * 300.00562 * 5 4 2 37 37 H 1.08997 * 109.47024 * 60.00015 * 6 5 4 38 38 H 1.09005 * 109.46804 * 299.99744 * 6 5 4 39 39 H 1.08997 * 109.46919 * 34.56443 * 8 7 6 40 40 H 1.08999 * 109.46452 * 154.55839 * 8 7 6 41 41 H 0.96998 * 120.00211 * 180.02562 * 12 11 9 42 42 H 0.96694 * 113.99723 * 304.61604 * 23 22 19 43 43 H 1.08997 * 113.61078 * 334.57081 * 24 22 19 44 44 H 1.09001 * 113.61315 * 105.47322 * 24 22 19 45 45 H 1.08997 * 113.61596 * 270.88297 * 25 24 22 46 46 H 1.08996 * 113.61295 * 139.98021 * 25 24 22 47 47 H 1.09004 * 113.61456 * 254.53624 * 26 22 19 48 48 H 1.09002 * 113.61501 * 25.34983 * 26 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.6315 -2.2426 0.9705 6 6 2.1792 -3.0402 2.1556 7 7 1.8312 -4.4542 1.9952 8 6 0.5743 -4.9664 2.5467 9 6 0.7751 -5.3387 3.9930 10 1 1.7425 -5.2075 4.4551 11 6 -0.2756 -5.8480 4.7261 12 7 -0.1003 -6.1734 5.9882 13 14 -1.9482 -6.0770 3.9263 14 1 -2.0304 -7.4348 3.3307 15 1 -3.0122 -5.9203 4.9503 16 1 -2.1316 -5.0578 2.8620 17 6 2.6674 -5.2839 1.3403 18 8 3.7409 -4.8777 0.9484 19 6 2.2711 -6.7180 1.1004 20 9 1.6329 -7.2221 2.2387 21 9 1.3985 -6.7843 0.0088 22 6 3.5208 -7.5500 0.8056 23 8 4.5217 -7.4256 1.8180 24 6 4.0605 -7.3663 -0.6226 25 6 4.3318 -8.8800 -0.6304 26 6 3.2141 -9.0062 0.4182 27 1 -0.3633 0.4513 0.9232 28 1 -0.3633 0.5739 -0.8525 29 1 -0.3633 -1.0252 -0.0709 30 1 3.0828 1.3433 -0.0709 31 1 1.5898 1.9163 -0.8525 32 1 1.7044 1.8724 0.9232 33 1 1.5611 -0.3871 2.0628 34 1 3.0797 -0.6611 1.1756 35 1 2.0658 -2.6214 0.0452 36 1 0.5472 -2.3474 0.9323 37 1 1.7445 -2.6613 3.0805 38 1 3.2635 -2.9354 2.1940 39 1 -0.1948 -4.1976 2.4729 40 1 0.2630 -5.8468 1.9846 41 1 -0.8395 -6.5321 6.5039 42 1 4.7911 -6.5140 1.9948 43 1 3.3008 -7.0552 -1.3397 44 1 4.9651 -6.7603 -0.6730 45 1 5.3180 -9.1487 -0.2518 46 1 4.0963 -9.3609 -1.5797 47 1 3.4353 -9.7241 1.2081 48 1 2.2224 -9.1437 -0.0130 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764539071.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:52 Heat of formation + Delta-G solvation = -158.238330 kcal Electronic energy + Delta-G solvation = -31721.412210 eV Core-core repulsion = 27255.126222 eV Total energy + Delta-G solvation = -4466.285987 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -50.36451 -48.25632 -41.27785 -40.18196 -38.67688 -37.17946 -35.77877 -34.77977 -33.24563 -30.30868 -29.85676 -28.49746 -27.41211 -26.85464 -25.10594 -24.55067 -23.42718 -21.85242 -20.93318 -20.86412 -19.48903 -19.09924 -18.70890 -18.56889 -17.56321 -16.94039 -16.71181 -16.51030 -16.20951 -16.15428 -16.06968 -15.53562 -15.42927 -15.23129 -15.04446 -14.95726 -14.62585 -14.50573 -14.40059 -14.11905 -13.58996 -13.48711 -13.36633 -13.28688 -13.22454 -13.17371 -12.74992 -12.64607 -12.56958 -12.41577 -12.39637 -12.36709 -12.08539 -11.86790 -11.77734 -11.74657 -11.56917 -11.15413 -10.82928 -10.64466 -9.75462 -9.33866 -8.32341 -6.37949 0.96604 1.32871 1.36006 1.42441 1.56665 2.30217 2.47882 2.64569 2.73292 3.00790 3.01569 3.11576 3.29092 3.67832 3.76891 3.86792 3.90545 4.04565 4.16724 4.30055 4.31634 4.37879 4.46884 4.52389 4.54830 4.62742 4.63121 4.68831 4.72004 4.74995 4.78397 4.94322 4.98642 5.00304 5.00857 5.02953 5.05669 5.15485 5.32522 5.37205 5.38554 5.96228 6.02881 6.09072 6.27091 6.32189 6.60347 6.68459 7.25193 8.84041 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.008301 B = 0.005383 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3372.083322 B = 5200.486704 C = 7573.550376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.563 5.563 3 C 0.025 3.975 4 C 0.065 3.935 5 C -0.115 4.115 6 C 0.115 3.885 7 N -0.570 5.570 8 C 0.208 3.792 9 C -0.524 4.524 10 H 0.034 0.966 11 C 0.026 3.974 12 N -0.938 5.938 13 Si 0.926 3.074 14 H -0.269 1.269 15 H -0.278 1.278 16 H -0.239 1.239 17 C 0.482 3.518 18 O -0.535 6.535 19 C 0.254 3.746 20 F -0.173 7.173 21 F -0.179 7.179 22 C 0.071 3.929 23 O -0.531 6.531 24 C -0.143 4.143 25 C -0.112 4.112 26 C -0.126 4.126 27 H 0.028 0.972 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.028 0.972 33 H 0.040 0.960 34 H 0.082 0.918 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.049 0.951 40 H 0.039 0.961 41 H 0.268 0.732 42 H 0.388 0.612 43 H 0.099 0.901 44 H 0.085 0.915 45 H 0.092 0.908 46 H 0.103 0.897 47 H 0.082 0.918 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.581 5.710 -15.500 16.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.287 5.287 3 C -0.123 4.123 4 C -0.064 4.064 5 C -0.153 4.153 6 C -0.007 4.007 7 N -0.297 5.297 8 C 0.086 3.914 9 C -0.563 4.563 10 H 0.053 0.947 11 C -0.173 4.173 12 N -0.578 5.578 13 Si 0.749 3.251 14 H -0.194 1.194 15 H -0.203 1.203 16 H -0.162 1.162 17 C 0.265 3.735 18 O -0.415 6.415 19 C 0.214 3.786 20 F -0.154 7.154 21 F -0.160 7.160 22 C 0.028 3.972 23 O -0.339 6.339 24 C -0.181 4.181 25 C -0.149 4.149 26 C -0.164 4.164 27 H 0.046 0.954 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.047 0.953 33 H 0.058 0.942 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.077 0.923 42 H 0.239 0.761 43 H 0.117 0.883 44 H 0.103 0.897 45 H 0.110 0.890 46 H 0.121 0.879 47 H 0.100 0.900 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.086 5.025 -15.935 17.201 hybrid contribution -1.354 0.723 1.474 2.128 sum 2.732 5.748 -14.462 15.800 Atomic orbital electron populations 1.22467 0.86945 1.02356 1.01059 1.61963 1.08710 1.14919 1.43135 1.22425 1.01104 0.87691 1.01093 1.21957 1.00691 0.92052 0.91687 1.21771 1.01109 0.94802 0.97662 1.21562 1.01536 0.78385 0.99260 1.48048 1.21070 1.09822 1.50790 1.19948 0.82226 0.95672 0.93560 1.21214 0.97346 1.43025 0.94674 0.94730 1.25608 1.02656 0.94110 0.94965 1.70020 1.33783 1.44457 1.09513 0.86030 0.79394 0.80223 0.79449 1.19374 1.20300 1.16210 1.20854 0.85379 0.87314 0.79961 1.90629 1.21775 1.76324 1.52752 1.22224 0.88527 0.93705 0.74154 1.93208 1.83089 1.88559 1.50532 1.92995 1.71550 1.97088 1.54344 1.23367 0.84761 0.98115 0.90995 1.86440 1.56032 1.33917 1.57558 1.23525 1.02479 0.99190 0.92862 1.22706 0.98392 0.94284 0.99501 1.23183 1.01701 0.91511 0.99968 0.95367 0.90118 0.91904 0.90900 0.90258 0.95312 0.94154 0.89973 0.92101 0.91883 0.89877 0.89901 0.93341 0.94280 0.92257 0.76125 0.88308 0.89657 0.88989 0.87874 0.89973 0.87438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.32 127.69 1.19 1.59 16 2 N -0.56 -12.43 5.02 -948.85 -4.76 -17.19 16 3 C 0.02 0.42 9.57 127.69 1.22 1.64 16 4 C 0.06 1.53 4.96 86.31 0.43 1.95 16 5 C -0.11 -3.26 5.46 30.60 0.17 -3.09 16 6 C 0.11 3.87 5.46 86.38 0.47 4.34 16 7 N -0.57 -22.89 2.46 -826.17 -2.03 -24.92 16 8 C 0.21 9.35 3.74 85.63 0.32 9.67 16 9 C -0.52 -28.62 8.65 25.60 0.22 -28.40 16 10 H 0.03 2.15 8.06 -2.91 -0.02 2.12 16 11 C 0.03 1.44 5.47 84.65 0.46 1.91 16 12 N -0.94 -56.82 13.96 21.45 0.30 -56.52 16 13 Si 0.93 41.68 27.47 68.60 1.88 43.56 16 14 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 15 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 16 H -0.24 -9.65 6.54 99.48 0.65 -9.00 16 17 C 0.48 18.97 6.69 87.66 0.59 19.56 16 18 O -0.53 -20.43 13.76 7.82 0.11 -20.33 16 19 C 0.25 9.70 1.05 29.85 0.03 9.73 16 20 F -0.17 -7.97 13.01 44.97 0.58 -7.38 16 21 F -0.18 -6.32 15.10 44.97 0.68 -5.64 16 22 C 0.07 2.31 0.79 -10.27 -0.01 2.30 16 23 O -0.53 -18.86 13.35 -138.12 -1.84 -20.70 16 24 C -0.14 -3.70 6.64 31.12 0.21 -3.49 16 25 C -0.11 -2.36 8.02 31.12 0.25 -2.11 16 26 C -0.13 -3.41 7.33 31.12 0.23 -3.18 16 27 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.08 1.35 8.12 -2.39 -0.02 1.33 16 29 H 0.06 1.37 6.47 -2.39 -0.02 1.36 16 30 H 0.07 1.16 8.12 -2.39 -0.02 1.14 16 31 H 0.08 1.13 8.12 -2.38 -0.02 1.11 16 32 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.04 0.93 8.12 -2.39 -0.02 0.91 16 34 H 0.08 1.84 8.06 -2.39 -0.02 1.82 16 35 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.06 1.82 6.55 -2.39 -0.02 1.81 16 37 H 0.08 2.86 8.07 -2.39 -0.02 2.84 16 38 H 0.08 2.74 7.37 -2.38 -0.02 2.72 16 39 H 0.05 2.07 7.17 -2.39 -0.02 2.05 16 40 H 0.04 1.79 4.82 -2.39 -0.01 1.78 16 41 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 42 H 0.39 13.39 7.02 -74.06 -0.52 12.87 16 43 H 0.10 2.45 7.29 -2.39 -0.02 2.43 16 44 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 48 H 0.11 2.69 7.69 -2.39 -0.02 2.67 16 Total: -1.00 -65.45 384.39 1.08 -64.37 By element: Atomic # 1 Polarization: 31.95 SS G_CDS: 0.39 Total: 32.33 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 5.78 Total: 12.42 kcal Atomic # 7 Polarization: -92.15 SS G_CDS: -6.49 Total: -98.64 kcal Atomic # 8 Polarization: -39.29 SS G_CDS: -1.74 Total: -41.03 kcal Atomic # 9 Polarization: -14.28 SS G_CDS: 1.26 Total: -13.02 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 1.88 Total: 43.56 kcal Total: -65.45 1.08 -64.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764539071.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.867 kcal (2) G-P(sol) polarization free energy of solvation -65.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds