Wall clock time and date at job start Tue Mar 31 2020 19:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 120.00193 * 2 1 4 4 H 1.48498 * 109.47319 * 270.00188 * 3 2 1 5 5 H 1.48507 * 109.46822 * 30.00165 * 3 2 1 6 6 H 1.48502 * 109.47165 * 149.99816 * 3 2 1 7 7 C 1.37876 * 120.00365 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00399 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99654 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47287 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99755 * 293.95144 * 10 9 7 12 12 C 1.53003 * 109.46974 * 164.41837 * 11 10 9 13 13 C 1.52998 * 117.49931 * 244.13804 * 12 11 10 14 14 C 1.52998 * 117.49366 * 175.47888 * 12 11 10 15 15 C 1.46897 * 110.99961 * 169.99993 * 10 9 7 16 16 N 1.46493 * 109.47122 * 275.38339 * 15 10 9 17 17 C 1.34793 * 134.66827 * 275.19740 * 16 15 10 18 18 O 1.21284 * 132.00706 * 0.02562 * 17 16 15 19 19 C 1.49829 * 95.98736 * 180.02562 * 17 16 15 20 20 C 1.53701 * 115.32033 * 115.20047 * 19 17 16 21 21 C 1.55473 * 101.99049 * 111.94182 * 20 19 17 22 22 C 1.55017 * 101.03599 * 33.53555 * 21 20 19 23 23 O 1.42452 * 116.59503 * 244.15734 * 19 17 16 24 24 C 1.46518 * 134.66180 * 95.56136 * 16 15 10 25 25 H 1.09006 * 113.09182 * 295.34571 * 24 16 15 26 26 C 1.52995 * 113.09771 * 64.63065 * 24 16 15 27 27 C 1.53004 * 117.50033 * 253.42873 * 26 24 16 28 28 C 1.52997 * 117.50123 * 184.80440 * 26 24 16 29 29 H 0.97004 * 119.99958 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47285 * 59.99845 * 9 7 2 31 31 H 1.09000 * 109.47147 * 299.99631 * 9 7 2 32 32 H 1.09004 * 109.47159 * 284.42321 * 11 10 9 33 33 H 1.09006 * 109.46862 * 44.42184 * 11 10 9 34 34 H 1.08999 * 115.54753 * 29.81507 * 12 11 10 35 35 H 1.08997 * 117.49834 * 0.02562 * 13 12 11 36 36 H 1.09004 * 117.49413 * 145.02171 * 13 12 11 37 37 H 1.09001 * 117.49399 * 214.97852 * 14 12 11 38 38 H 1.08996 * 117.50414 * 0.02562 * 14 12 11 39 39 H 1.08994 * 109.47767 * 35.38889 * 15 10 9 40 40 H 1.09010 * 109.47000 * 155.38968 * 15 10 9 41 41 H 1.08994 * 110.93106 * 230.11983 * 20 19 17 42 42 H 1.09001 * 110.92616 * 353.77078 * 20 19 17 43 43 H 1.08999 * 111.10863 * 275.59613 * 21 20 19 44 44 H 1.08999 * 111.14781 * 151.49130 * 21 20 19 45 45 H 1.08996 * 110.30088 * 205.02545 * 22 21 20 46 46 H 1.09002 * 110.29830 * 82.87029 * 22 21 20 47 47 H 1.09002 * 115.54772 * 39.12876 * 26 24 16 48 48 H 1.09002 * 117.49705 * 359.97438 * 27 26 24 49 49 H 1.08996 * 117.49938 * 145.01785 * 27 26 24 50 50 H 1.09005 * 117.50080 * 214.97653 * 28 26 24 51 51 H 1.09005 * 117.50217 * 359.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2056 -3.6157 -0.0015 11 6 2.9719 -3.6535 -1.2543 12 6 4.1959 -4.5541 -1.0765 13 6 5.5752 -3.9007 -1.1832 14 6 5.0695 -4.8095 -2.3063 15 6 1.5209 -4.8936 0.2356 16 7 1.3604 -5.1016 1.6768 17 6 2.1395 -5.6067 2.6538 18 8 3.2626 -6.0645 2.6414 19 6 1.1486 -5.4114 3.7606 20 6 0.6293 -6.7023 4.4134 21 6 1.2499 -6.6169 5.8364 22 6 1.2333 -5.0854 6.0759 23 8 1.5162 -4.5003 4.7922 24 6 0.2852 -4.8509 2.6401 25 1 0.0597 -3.7915 2.7630 26 6 -0.9673 -5.6877 2.3727 27 6 -2.1856 -4.9693 1.7891 28 6 -2.1931 -5.4248 3.2497 29 1 -0.4850 0.8401 0.0004 30 1 0.6247 -2.5563 -0.8920 31 1 0.6241 -2.5575 0.8880 32 1 2.3434 -4.0478 -2.0528 33 1 3.2969 -2.6454 -1.5119 34 1 4.0793 -5.3704 -0.3636 35 1 5.6107 -2.8292 -1.3795 36 1 6.3662 -4.2874 -0.5406 37 1 5.5281 -5.7937 -2.4022 38 1 4.7725 -4.3356 -3.2419 39 1 0.5405 -4.8743 -0.2402 40 1 2.1130 -5.7065 -0.1851 41 1 -0.4595 -6.7029 4.4629 42 1 0.9939 -7.5813 3.8819 43 1 2.2687 -7.0043 5.8443 44 1 0.6297 -7.1352 6.5676 45 1 2.0025 -4.8069 6.7962 46 1 0.2516 -4.7684 6.4280 47 1 -0.7875 -6.7144 2.0537 48 1 -2.0949 -3.9004 1.5960 49 1 -2.8075 -5.5233 1.0859 50 1 -2.8200 -6.2785 3.5074 51 1 -2.1071 -4.6559 4.0175 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839988539.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:28 Heat of formation + Delta-G solvation = 23.821358 kcal Electronic energy + Delta-G solvation = -30752.588086 eV Core-core repulsion = 26848.426330 eV Total energy + Delta-G solvation = -3904.161757 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.53483 -38.29621 -37.58045 -37.25731 -35.73570 -34.90464 -32.54303 -32.25966 -29.94628 -27.56775 -26.79849 -25.42898 -24.32852 -22.57476 -22.39654 -21.99742 -21.95411 -20.97990 -20.44175 -19.69397 -18.21757 -17.36727 -16.77581 -16.48619 -16.15203 -15.40545 -15.30352 -15.21659 -14.78260 -14.61994 -14.27484 -14.06263 -13.90269 -13.57480 -13.33420 -13.03880 -12.81153 -12.30007 -12.06832 -12.00710 -11.82879 -11.73346 -11.53903 -11.50736 -11.33319 -11.29259 -11.14627 -11.08647 -10.84259 -10.74314 -10.47188 -10.39269 -10.27509 -10.10997 -10.07022 -9.73179 -9.46963 -9.27045 -8.98970 -8.54385 -8.39435 -7.33007 -6.04646 -4.04956 2.59409 3.17269 3.31360 3.37900 3.43890 3.66742 3.97683 3.99203 4.20670 4.32929 4.43026 4.52260 4.73362 4.80947 4.88803 4.93883 5.00841 5.09463 5.23568 5.25788 5.31895 5.34620 5.37753 5.41122 5.53914 5.54563 5.56368 5.59746 5.62510 5.71106 5.75417 5.85129 5.91424 5.94227 5.98782 5.99670 6.15624 6.19640 6.23842 6.29562 6.33921 6.49635 6.81990 6.88972 6.95348 7.04799 7.25424 7.28048 7.77829 8.02924 8.14841 8.48214 8.59526 9.02271 9.59289 11.06023 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.008853 B = 0.004582 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3161.894672 B = 6109.080101 C = 7420.375672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.506 4.506 8 H 0.063 0.937 9 C 0.199 3.801 10 N -0.548 5.548 11 C 0.099 3.901 12 C -0.141 4.141 13 C -0.173 4.173 14 C -0.189 4.189 15 C 0.306 3.694 16 N -0.594 5.594 17 C 0.522 3.478 18 O -0.513 6.513 19 C 0.066 3.934 20 C -0.123 4.123 21 C -0.155 4.155 22 C 0.047 3.953 23 O -0.333 6.333 24 C 0.148 3.852 25 H 0.105 0.895 26 C -0.161 4.161 27 C -0.168 4.168 28 C -0.170 4.170 29 H 0.261 0.739 30 H -0.009 1.009 31 H 0.030 0.970 32 H 0.026 0.974 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.058 0.942 40 H 0.080 0.920 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.067 0.933 47 H 0.108 0.892 48 H 0.104 0.896 49 H 0.094 0.906 50 H 0.096 0.904 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.393 -14.962 6.715 16.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.544 4.544 8 H 0.081 0.919 9 C 0.074 3.926 10 N -0.274 5.274 11 C -0.029 4.029 12 C -0.160 4.160 13 C -0.210 4.210 14 C -0.226 4.226 15 C 0.096 3.904 16 N -0.330 5.330 17 C 0.306 3.694 18 O -0.387 6.387 19 C 0.022 3.978 20 C -0.161 4.161 21 C -0.192 4.192 22 C -0.029 4.029 23 O -0.250 6.250 24 C 0.044 3.956 25 H 0.123 0.877 26 C -0.180 4.180 27 C -0.205 4.205 28 C -0.208 4.208 29 H 0.070 0.930 30 H 0.009 0.991 31 H 0.048 0.952 32 H 0.044 0.956 33 H 0.110 0.890 34 H 0.119 0.881 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.075 0.925 40 H 0.098 0.902 41 H 0.116 0.884 42 H 0.104 0.896 43 H 0.100 0.900 44 H 0.105 0.895 45 H 0.108 0.892 46 H 0.085 0.915 47 H 0.126 0.874 48 H 0.122 0.878 49 H 0.113 0.887 50 H 0.114 0.886 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.471 -14.744 6.799 16.424 hybrid contribution -0.228 0.866 -0.659 1.112 sum -2.699 -13.879 6.140 15.414 Atomic orbital electron populations 1.69940 1.05991 1.26731 1.51147 1.24941 0.94844 0.99192 0.95376 0.86539 0.79987 0.83187 0.78005 1.20757 1.21243 1.19746 1.21145 0.93543 0.89844 1.49876 0.91871 1.19734 0.89760 0.87232 0.95850 1.61690 1.28403 1.02992 1.34324 1.21509 0.91972 0.99891 0.89516 1.22406 0.92352 1.01749 0.99472 1.22920 0.97707 0.98884 1.01446 1.22941 1.05316 1.00734 0.93656 1.21606 0.97752 0.93658 0.77384 1.49889 1.15882 1.59715 1.07505 1.22050 0.85783 0.76724 0.84810 1.90630 1.17891 1.46072 1.84070 1.22919 0.94421 0.91085 0.89401 1.22778 1.02184 0.95732 0.95357 1.23323 1.02537 0.96738 0.96627 1.23564 1.01351 0.92149 0.85872 1.88470 1.84088 1.38983 1.13489 1.21967 0.87539 1.00713 0.85413 0.87717 1.22393 0.89115 1.00109 1.06395 1.23042 0.99796 1.01880 0.95820 1.22918 0.99653 1.03588 0.94642 0.92982 0.99084 0.95199 0.95590 0.88979 0.88065 0.88745 0.89513 0.89512 0.89120 0.92457 0.90188 0.88403 0.89557 0.89956 0.89509 0.89243 0.91520 0.87369 0.87768 0.88711 0.88583 0.88399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.14 13.29 55.43 0.74 -25.40 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.51 -14.15 8.29 -34.44 -0.29 -14.43 16 8 H 0.06 1.80 7.25 -52.49 -0.38 1.42 16 9 C 0.20 5.06 4.55 -4.97 -0.02 5.03 16 10 N -0.55 -11.93 4.55 -239.97 -1.09 -13.02 16 11 C 0.10 1.94 5.04 -3.82 -0.02 1.93 16 12 C -0.14 -2.46 5.51 -90.62 -0.50 -2.96 16 13 C -0.17 -2.80 10.18 -26.69 -0.27 -3.07 16 14 C -0.19 -2.71 10.25 -26.69 -0.27 -2.99 16 15 C 0.31 5.63 6.42 -63.33 -0.41 5.23 16 16 N -0.59 -10.74 3.45 -195.37 -0.67 -11.41 16 17 C 0.52 9.93 8.63 -23.20 -0.20 9.73 16 18 O -0.51 -11.31 18.03 5.55 0.10 -11.21 16 19 C 0.07 1.01 1.85 -92.26 -0.17 0.84 16 20 C -0.12 -1.31 5.63 -25.05 -0.14 -1.45 16 21 C -0.15 -1.44 7.16 -24.35 -0.17 -1.62 16 22 C 0.05 0.52 7.79 38.22 0.30 0.82 16 23 O -0.33 -5.46 11.17 -35.23 -0.39 -5.86 16 24 C 0.15 2.32 4.27 -80.15 -0.34 1.98 16 25 H 0.10 1.92 7.81 -51.93 -0.41 1.51 16 26 C -0.16 -1.90 4.08 -90.62 -0.37 -2.27 16 27 C -0.17 -1.99 10.24 -26.73 -0.27 -2.26 16 28 C -0.17 -1.67 9.08 -26.73 -0.24 -1.91 16 29 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 30 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 31 H 0.03 0.81 7.76 -51.93 -0.40 0.41 16 32 H 0.03 0.48 8.06 -51.93 -0.42 0.06 16 33 H 0.09 1.99 6.32 -51.93 -0.33 1.66 16 34 H 0.10 1.89 7.00 -51.93 -0.36 1.52 16 35 H 0.09 1.57 8.03 -51.93 -0.42 1.15 16 36 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.06 1.00 7.86 -51.93 -0.41 0.60 16 40 H 0.08 1.37 6.49 -51.92 -0.34 1.03 16 41 H 0.10 0.85 5.87 -51.93 -0.31 0.55 16 42 H 0.09 0.91 7.94 -51.93 -0.41 0.50 16 43 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.11 1.18 8.08 -51.93 -0.42 0.76 16 48 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 49 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 50 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 51 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 410.27 15.07 6.18 6.18 Total: -1.00 -32.98 410.27 -12.46 -45.44 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -8.81 Total: 4.37 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -3.49 Total: -5.89 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: -1.03 Total: -49.84 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.29 Total: -17.07 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.98 -12.46 -45.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839988539.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.262 kcal (2) G-P(sol) polarization free energy of solvation -32.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds