Wall clock time and date at job start Tue Mar 31 2020 19:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 120.00193 * 2 1 4 4 H 1.48498 * 109.47319 * 270.00188 * 3 2 1 5 5 H 1.48507 * 109.46822 * 30.00165 * 3 2 1 6 6 H 1.48502 * 109.47165 * 149.99816 * 3 2 1 7 7 C 1.37876 * 120.00365 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00399 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99654 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47287 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99755 * 293.95144 * 10 9 7 12 12 C 1.53003 * 109.46974 * 164.41837 * 11 10 9 13 13 C 1.52998 * 117.49931 * 244.13804 * 12 11 10 14 14 C 1.52998 * 117.49366 * 175.47888 * 12 11 10 15 15 C 1.46897 * 110.99961 * 169.99993 * 10 9 7 16 16 N 1.46493 * 109.47122 * 275.38339 * 15 10 9 17 17 C 1.34793 * 134.66827 * 275.19740 * 16 15 10 18 18 O 1.21284 * 132.00706 * 0.02562 * 17 16 15 19 19 C 1.49829 * 95.98736 * 180.02562 * 17 16 15 20 20 C 1.53701 * 115.32033 * 115.20047 * 19 17 16 21 21 C 1.55473 * 101.99049 * 111.94182 * 20 19 17 22 22 C 1.55017 * 101.03599 * 33.53555 * 21 20 19 23 23 O 1.42452 * 116.59503 * 244.15734 * 19 17 16 24 24 C 1.46518 * 134.66180 * 95.56136 * 16 15 10 25 25 H 1.09006 * 113.09182 * 295.34571 * 24 16 15 26 26 C 1.52995 * 113.09771 * 64.63065 * 24 16 15 27 27 C 1.53004 * 117.50033 * 253.42873 * 26 24 16 28 28 C 1.52997 * 117.50123 * 184.80440 * 26 24 16 29 29 H 0.97004 * 119.99958 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47285 * 59.99845 * 9 7 2 31 31 H 1.09000 * 109.47147 * 299.99631 * 9 7 2 32 32 H 1.09004 * 109.47159 * 284.42321 * 11 10 9 33 33 H 1.09006 * 109.46862 * 44.42184 * 11 10 9 34 34 H 1.08999 * 115.54753 * 29.81507 * 12 11 10 35 35 H 1.08997 * 117.49834 * 0.02562 * 13 12 11 36 36 H 1.09004 * 117.49413 * 145.02171 * 13 12 11 37 37 H 1.09001 * 117.49399 * 214.97852 * 14 12 11 38 38 H 1.08996 * 117.50414 * 0.02562 * 14 12 11 39 39 H 1.08994 * 109.47767 * 35.38889 * 15 10 9 40 40 H 1.09010 * 109.47000 * 155.38968 * 15 10 9 41 41 H 1.08994 * 110.93106 * 230.11983 * 20 19 17 42 42 H 1.09001 * 110.92616 * 353.77078 * 20 19 17 43 43 H 1.08999 * 111.10863 * 275.59613 * 21 20 19 44 44 H 1.08999 * 111.14781 * 151.49130 * 21 20 19 45 45 H 1.08996 * 110.30088 * 205.02545 * 22 21 20 46 46 H 1.09002 * 110.29830 * 82.87029 * 22 21 20 47 47 H 1.09002 * 115.54772 * 39.12876 * 26 24 16 48 48 H 1.09002 * 117.49705 * 359.97438 * 27 26 24 49 49 H 1.08996 * 117.49938 * 145.01785 * 27 26 24 50 50 H 1.09005 * 117.50080 * 214.97653 * 28 26 24 51 51 H 1.09005 * 117.50217 * 359.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2056 -3.6157 -0.0015 11 6 2.9719 -3.6535 -1.2543 12 6 4.1959 -4.5541 -1.0765 13 6 5.5752 -3.9007 -1.1832 14 6 5.0695 -4.8095 -2.3063 15 6 1.5209 -4.8936 0.2356 16 7 1.3604 -5.1016 1.6768 17 6 2.1395 -5.6067 2.6538 18 8 3.2626 -6.0645 2.6414 19 6 1.1486 -5.4114 3.7606 20 6 0.6293 -6.7023 4.4134 21 6 1.2499 -6.6169 5.8364 22 6 1.2333 -5.0854 6.0759 23 8 1.5162 -4.5003 4.7922 24 6 0.2852 -4.8509 2.6401 25 1 0.0597 -3.7915 2.7630 26 6 -0.9673 -5.6877 2.3727 27 6 -2.1856 -4.9693 1.7891 28 6 -2.1931 -5.4248 3.2497 29 1 -0.4850 0.8401 0.0004 30 1 0.6247 -2.5563 -0.8920 31 1 0.6241 -2.5575 0.8880 32 1 2.3434 -4.0478 -2.0528 33 1 3.2969 -2.6454 -1.5119 34 1 4.0793 -5.3704 -0.3636 35 1 5.6107 -2.8292 -1.3795 36 1 6.3662 -4.2874 -0.5406 37 1 5.5281 -5.7937 -2.4022 38 1 4.7725 -4.3356 -3.2419 39 1 0.5405 -4.8743 -0.2402 40 1 2.1130 -5.7065 -0.1851 41 1 -0.4595 -6.7029 4.4629 42 1 0.9939 -7.5813 3.8819 43 1 2.2687 -7.0043 5.8443 44 1 0.6297 -7.1352 6.5676 45 1 2.0025 -4.8069 6.7962 46 1 0.2516 -4.7684 6.4280 47 1 -0.7875 -6.7144 2.0537 48 1 -2.0949 -3.9004 1.5960 49 1 -2.8075 -5.5233 1.0859 50 1 -2.8200 -6.2785 3.5074 51 1 -2.1071 -4.6559 4.0175 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839988539.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:26 Heat of formation + Delta-G solvation = 2.930741 kcal Electronic energy + Delta-G solvation = -30753.493972 eV Core-core repulsion = 26848.426330 eV Total energy + Delta-G solvation = -3905.067642 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.79516 -39.61258 -38.99543 -38.44749 -37.16004 -36.36053 -34.64749 -33.22496 -31.31536 -29.47829 -28.08731 -26.74926 -26.00204 -23.93145 -23.41040 -23.26366 -22.84166 -22.58421 -21.59744 -21.16952 -19.50334 -18.72875 -18.49279 -18.11672 -17.37777 -16.84316 -16.78696 -16.46087 -16.30481 -15.80965 -15.58008 -15.40017 -15.35442 -14.92525 -14.64401 -14.36121 -14.24254 -14.09244 -13.72107 -13.49212 -13.11799 -13.02512 -12.73375 -12.70456 -12.66772 -12.53359 -12.37394 -12.35621 -12.23035 -12.15496 -12.11148 -11.91261 -11.47146 -11.35892 -11.25085 -11.19813 -11.13082 -10.85819 -10.64871 -10.27613 -9.98575 -9.10694 -8.24235 -6.32970 1.16908 1.35168 1.36843 1.48249 1.85081 2.35976 2.60785 2.72071 2.85409 2.98014 3.08336 3.30566 3.40281 3.50667 3.75127 3.85756 3.88150 3.96979 3.99044 4.05209 4.09288 4.17602 4.19930 4.24020 4.28860 4.42961 4.49474 4.63636 4.68691 4.72827 4.73815 4.77360 4.77866 4.83296 4.87675 4.99846 5.00619 5.02961 5.09456 5.15805 5.20148 5.24495 5.25794 5.30655 5.34881 5.47249 5.61969 5.64179 5.91460 6.00505 6.29278 6.50883 6.80595 7.11215 7.35800 8.86075 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.008853 B = 0.004582 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3161.894672 B = 6109.080101 C = 7420.375672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.011 3.989 3 Si 0.960 3.040 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.052 0.948 9 C 0.222 3.778 10 N -0.564 5.564 11 C 0.105 3.895 12 C -0.160 4.160 13 C -0.182 4.182 14 C -0.152 4.152 15 C 0.306 3.694 16 N -0.601 5.601 17 C 0.504 3.496 18 O -0.555 6.555 19 C 0.078 3.922 20 C -0.115 4.115 21 C -0.145 4.145 22 C 0.034 3.966 23 O -0.376 6.376 24 C 0.149 3.851 25 H 0.065 0.935 26 C -0.162 4.162 27 C -0.184 4.184 28 C -0.139 4.139 29 H 0.265 0.735 30 H -0.030 1.030 31 H 0.002 0.998 32 H 0.038 0.962 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.111 0.889 38 H 0.103 0.897 39 H 0.065 0.935 40 H 0.095 0.905 41 H 0.126 0.874 42 H 0.090 0.910 43 H 0.071 0.929 44 H 0.128 0.872 45 H 0.096 0.904 46 H 0.090 0.910 47 H 0.128 0.872 48 H 0.067 0.933 49 H 0.113 0.887 50 H 0.134 0.866 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.104 -16.743 7.501 18.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.188 4.188 3 Si 0.785 3.215 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.199 1.199 7 C -0.563 4.563 8 H 0.070 0.930 9 C 0.096 3.904 10 N -0.290 5.290 11 C -0.023 4.023 12 C -0.178 4.178 13 C -0.219 4.219 14 C -0.189 4.189 15 C 0.096 3.904 16 N -0.337 5.337 17 C 0.290 3.710 18 O -0.431 6.431 19 C 0.033 3.967 20 C -0.153 4.153 21 C -0.182 4.182 22 C -0.041 4.041 23 O -0.294 6.294 24 C 0.045 3.955 25 H 0.083 0.917 26 C -0.181 4.181 27 C -0.221 4.221 28 C -0.177 4.177 29 H 0.074 0.926 30 H -0.012 1.012 31 H 0.020 0.980 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.130 0.870 38 H 0.121 0.879 39 H 0.083 0.917 40 H 0.113 0.887 41 H 0.144 0.856 42 H 0.109 0.891 43 H 0.089 0.911 44 H 0.146 0.854 45 H 0.115 0.885 46 H 0.108 0.892 47 H 0.146 0.854 48 H 0.086 0.914 49 H 0.131 0.869 50 H 0.152 0.848 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.203 -16.532 7.591 18.471 hybrid contribution 0.015 1.468 -0.887 1.715 sum -3.188 -15.064 6.703 16.794 Atomic orbital electron populations 1.70045 1.07301 1.27805 1.51471 1.25753 0.95727 1.02601 0.94743 0.85522 0.78457 0.78924 0.78573 1.19372 1.20396 1.19928 1.21375 0.93190 0.91365 1.50345 0.92958 1.19274 0.89543 0.88154 0.93384 1.61639 1.28008 1.03460 1.35913 1.21434 0.92854 0.99153 0.88887 1.22203 0.92003 1.01555 1.02065 1.22976 0.96962 0.98928 1.03082 1.23037 1.01956 1.01315 0.92631 1.21649 0.98062 0.92382 0.78298 1.50109 1.17008 1.59059 1.07487 1.23010 0.85757 0.75897 0.86327 1.90580 1.19635 1.47898 1.85003 1.22959 0.91860 0.93075 0.88771 1.22892 1.03788 0.93023 0.95571 1.23342 1.02753 0.95504 0.96606 1.23932 1.02896 0.93498 0.83748 1.88430 1.84537 1.40690 1.15710 1.22004 0.88856 0.99373 0.85291 0.91719 1.22297 0.87577 1.00012 1.08241 1.23004 1.00591 1.00040 0.98473 1.23070 0.97491 1.04213 0.92881 0.92624 1.01197 0.97968 0.94388 0.91505 0.89352 0.89623 0.88827 0.87033 0.87881 0.91721 0.88731 0.85555 0.89094 0.91050 0.85404 0.88547 0.89196 0.85399 0.91435 0.86860 0.84778 0.88685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.55 13.29 21.45 0.28 -55.27 16 2 C 0.01 0.61 5.46 84.66 0.46 1.07 16 3 Si 0.96 45.66 29.54 68.60 2.03 47.69 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 6 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 7 C -0.52 -30.76 8.29 25.60 0.21 -30.54 16 8 H 0.05 3.12 7.25 -2.91 -0.02 3.10 16 9 C 0.22 12.04 4.55 85.56 0.39 12.43 16 10 N -0.56 -25.98 4.55 -913.13 -4.16 -30.14 16 11 C 0.10 4.26 5.04 86.30 0.44 4.69 16 12 C -0.16 -5.62 5.51 -10.79 -0.06 -5.68 16 13 C -0.18 -5.91 10.18 30.62 0.31 -5.60 16 14 C -0.15 -4.10 10.25 30.62 0.31 -3.79 16 15 C 0.31 11.80 6.42 170.81 1.10 12.90 16 16 N -0.60 -22.82 3.45 -890.41 -3.08 -25.90 16 17 C 0.50 19.92 8.63 79.74 0.69 20.61 16 18 O -0.55 -25.45 18.03 -3.04 -0.05 -25.50 16 19 C 0.08 2.39 1.85 -11.85 -0.02 2.36 16 20 C -0.12 -2.18 5.63 31.68 0.18 -2.01 16 21 C -0.14 -2.30 7.16 32.14 0.23 -2.07 16 22 C 0.03 0.71 7.79 72.67 0.57 1.27 16 23 O -0.38 -12.58 11.17 -148.98 -1.66 -14.24 16 24 C 0.15 4.84 4.27 37.06 0.16 5.00 16 25 H 0.06 2.60 7.81 -2.38 -0.02 2.58 16 26 C -0.16 -3.68 4.08 -10.80 -0.04 -3.72 16 27 C -0.18 -4.29 10.24 30.60 0.31 -3.97 16 28 C -0.14 -2.35 9.08 30.59 0.28 -2.08 16 29 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 30 H -0.03 -1.69 8.12 -2.39 -0.02 -1.71 16 31 H 0.00 0.13 7.76 -2.39 -0.02 0.11 16 32 H 0.04 1.42 8.06 -2.38 -0.02 1.41 16 33 H 0.07 3.03 6.32 -2.38 -0.02 3.01 16 34 H 0.09 3.37 7.00 -2.39 -0.02 3.35 16 35 H 0.09 2.90 8.03 -2.39 -0.02 2.88 16 36 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 37 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.06 2.38 7.86 -2.39 -0.02 2.36 16 40 H 0.09 3.34 6.49 -2.38 -0.02 3.33 16 41 H 0.13 1.67 5.87 -2.39 -0.01 1.66 16 42 H 0.09 1.69 7.94 -2.39 -0.02 1.68 16 43 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.13 2.46 8.08 -2.39 -0.02 2.44 16 48 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 49 H 0.11 2.19 8.14 -2.39 -0.02 2.18 16 50 H 0.13 1.35 8.14 -2.38 -0.02 1.33 16 51 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 Total: -1.00 -77.17 410.27 -0.23 -77.40 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: 0.90 Total: 25.06 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: 5.51 Total: 0.89 kcal Atomic # 7 Polarization: -104.35 SS G_CDS: -6.95 Total: -111.30 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -1.72 Total: -39.74 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -77.17 -0.23 -77.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839988539.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.329 kcal (2) G-P(sol) polarization free energy of solvation -77.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds