Wall clock time and date at job start Tue Mar 31 2020 19:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99706 * 2 1 4 4 H 1.48498 * 109.47353 * 269.72489 * 3 2 1 5 5 H 1.48501 * 109.47056 * 29.72463 * 3 2 1 6 6 H 1.48502 * 109.47258 * 149.72203 * 3 2 1 7 7 C 1.37874 * 120.00540 * 179.72382 * 2 1 3 8 8 H 1.08002 * 119.99803 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00421 * 180.02562 * 7 2 1 10 10 C 1.53035 * 109.45917 * 300.02623 * 9 7 2 11 11 C 1.53195 * 109.31466 * 178.60116 * 10 9 7 12 12 N 1.46927 * 108.76390 * 54.65285 * 11 10 9 13 13 C 1.34783 * 120.62538 * 126.40725 * 12 11 10 14 14 O 1.21585 * 119.99693 * 174.93908 * 13 12 11 15 15 N 1.34777 * 120.00018 * 354.94066 * 13 12 11 16 16 C 1.46495 * 119.99438 * 185.07203 * 15 13 12 17 17 C 1.53004 * 109.47280 * 180.02562 * 16 15 13 18 18 C 1.53005 * 119.67346 * 25.52172 * 17 16 15 19 19 C 1.53016 * 60.74067 * 247.83541 * 18 17 16 20 20 H 1.08995 * 119.83089 * 112.33560 * 19 18 17 21 21 C 1.54556 * 118.48197 * 269.86932 * 19 18 17 22 22 O 1.44622 * 104.97441 * 86.67413 * 21 19 18 23 23 C 1.43436 * 105.17621 * 320.65317 * 22 21 19 24 24 C 1.52807 * 115.64324 * 168.60253 * 23 22 21 25 25 C 1.53966 * 86.79180 * 92.97789 * 24 23 22 26 26 C 1.52821 * 115.83031 * 269.61719 * 23 22 21 27 27 C 1.46917 * 118.73908 * 306.38805 * 12 11 10 28 28 C 1.53042 * 109.46161 * 179.97438 * 9 7 2 29 29 H 0.97000 * 120.00086 * 0.27623 * 1 2 3 30 30 H 1.08998 * 109.46118 * 59.99930 * 9 7 2 31 31 H 1.09002 * 109.50362 * 298.56535 * 10 9 7 32 32 H 1.09007 * 109.50272 * 58.66376 * 10 9 7 33 33 H 1.09003 * 109.59916 * 294.86543 * 11 10 9 34 34 H 1.08997 * 109.70531 * 174.50779 * 11 10 9 35 35 H 0.96993 * 120.00375 * 5.07395 * 15 13 12 36 36 H 1.09004 * 109.47667 * 300.00209 * 16 15 13 37 37 H 1.09005 * 109.47677 * 60.00305 * 16 15 13 38 38 H 1.08994 * 117.42704 * 355.53749 * 18 17 16 39 39 H 1.09002 * 117.41777 * 140.13535 * 18 17 16 40 40 H 1.08999 * 110.33453 * 205.54743 * 21 19 18 41 41 H 1.08998 * 110.34244 * 327.69277 * 21 19 18 42 42 H 1.09004 * 113.66154 * 207.45082 * 24 23 22 43 43 H 1.08999 * 113.66243 * 338.50614 * 24 23 22 44 44 H 1.08996 * 113.58195 * 270.11870 * 25 24 23 45 45 H 1.08998 * 113.65764 * 139.31536 * 25 24 23 46 46 H 1.08996 * 113.66161 * 21.66371 * 26 23 22 47 47 H 1.09000 * 113.66122 * 152.72370 * 26 23 22 48 48 H 1.09005 * 109.58480 * 293.81786 * 27 12 11 49 49 H 1.08999 * 109.58580 * 173.39440 * 27 12 11 50 50 H 1.08993 * 109.49605 * 301.33658 * 28 9 7 51 51 H 1.08997 * 109.49629 * 61.43621 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5024 2.0432 -1.4000 5 1 1.4436 2.6543 0.6942 6 1 3.5437 1.4420 0.7059 7 6 2.0047 -1.1939 0.0058 8 1 1.4647 -2.1293 0.0107 9 6 3.5116 -1.1939 0.0063 10 6 4.0219 -0.4776 -1.2461 11 6 5.5534 -0.4488 -1.2247 12 7 6.0499 -1.8231 -1.0714 13 6 6.9445 -2.3311 -1.9421 14 8 7.4172 -3.4353 -1.7532 15 7 7.3151 -1.6152 -3.0222 16 6 8.2008 -2.2097 -4.0262 17 6 8.4642 -1.1938 -5.1396 18 6 8.3542 0.3028 -4.8410 19 6 7.3313 -0.3512 -5.7723 20 1 6.2915 -0.4408 -5.4581 21 6 7.6343 -0.3922 -7.2873 22 8 8.4170 -1.5930 -7.4795 23 6 9.2942 -1.6548 -6.3463 24 6 10.0453 -2.9728 -6.1626 25 6 11.1898 -2.3332 -6.9698 26 6 10.6481 -0.9660 -6.5140 27 6 5.5530 -2.6328 0.0493 28 6 4.0215 -2.6369 0.0138 29 1 -0.4850 0.8400 -0.0040 30 1 3.8744 -0.6760 0.8941 31 1 3.6802 -1.0094 -2.1341 32 1 3.6393 0.5430 -1.2629 33 1 5.8961 0.1591 -0.3873 34 1 5.9261 -0.0276 -2.1584 35 1 6.9954 -0.7064 -3.1347 36 1 9.1451 -2.4885 -3.5584 37 1 7.7284 -3.0970 -4.4479 38 1 8.0145 0.5927 -3.8467 39 1 9.0962 0.9608 -5.2933 40 1 6.7072 -0.4489 -7.8576 41 1 8.2071 0.4868 -7.5831 42 1 10.3071 -3.1863 -5.1262 43 1 9.5750 -3.8180 -6.6650 44 1 11.1104 -2.4976 -8.0443 45 1 12.1814 -2.5617 -6.5791 46 1 10.6593 -0.2080 -7.2971 47 1 11.0794 -0.6151 -5.5765 48 1 5.8956 -2.2030 0.9907 49 1 5.9234 -3.6536 -0.0449 50 1 3.6386 -3.1534 0.8938 51 1 3.6799 -3.1481 -0.8862 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898681507.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:49 Heat of formation + Delta-G solvation = -1.971174 kcal Electronic energy + Delta-G solvation = -30226.341787 eV Core-core repulsion = 26321.061581 eV Total energy + Delta-G solvation = -3905.280205 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.70586 -40.07559 -37.46138 -36.98696 -35.78574 -33.81798 -33.37039 -31.48630 -30.59180 -28.72713 -26.88582 -26.35968 -25.78872 -24.94177 -22.76589 -22.73535 -21.87394 -20.54319 -20.12551 -19.50635 -18.94683 -17.96539 -16.77413 -16.48030 -16.35602 -15.88681 -15.56434 -15.46774 -14.88274 -14.82004 -14.49260 -14.11687 -13.92464 -13.69869 -13.53577 -13.34224 -13.06726 -12.80434 -12.70922 -12.67406 -12.52344 -12.47642 -12.14228 -11.85599 -11.64983 -11.21848 -11.13013 -11.07706 -10.81155 -10.76250 -10.45106 -10.39184 -10.29397 -10.21137 -9.86042 -9.76654 -9.66832 -9.36904 -9.13373 -9.02847 -8.61000 -8.12037 -6.12975 -4.12302 2.75960 3.00050 3.16239 3.27572 3.31689 3.39172 3.41813 3.91102 3.94901 4.13993 4.18120 4.32867 4.33478 4.41197 4.56138 4.61010 4.72096 4.98120 5.09767 5.15867 5.25881 5.27769 5.30920 5.34790 5.39047 5.44345 5.52952 5.54790 5.56867 5.58291 5.63973 5.71796 5.75490 5.79983 5.81897 5.86071 5.89588 5.96471 6.17565 6.27060 6.48025 6.55973 6.57309 6.61058 6.68016 6.83388 7.13524 7.19510 7.45211 7.69437 8.08570 8.46913 8.75266 8.91832 9.48730 11.00454 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017536 B = 0.002958 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.311009 B = 9465.001933 C =10389.212306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.067 3.933 3 Si 0.886 3.114 4 H -0.279 1.279 5 H -0.297 1.297 6 H -0.265 1.265 7 C -0.512 4.512 8 H 0.074 0.926 9 C 0.016 3.984 10 C -0.134 4.134 11 C 0.109 3.891 12 N -0.619 5.619 13 C 0.709 3.291 14 O -0.597 6.597 15 N -0.753 5.753 16 C 0.189 3.811 17 C -0.162 4.162 18 C -0.129 4.129 19 C -0.194 4.194 20 H 0.125 0.875 21 C 0.076 3.924 22 O -0.344 6.344 23 C 0.121 3.879 24 C -0.128 4.128 25 C -0.136 4.136 26 C -0.151 4.151 27 C 0.127 3.873 28 C -0.114 4.114 29 H 0.264 0.736 30 H 0.028 0.972 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.394 0.606 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.063 0.937 42 H 0.099 0.901 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.093 0.907 48 H 0.059 0.941 49 H 0.084 0.916 50 H 0.069 0.931 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.594 1.606 -12.985 25.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.224 1.224 6 H -0.190 1.190 7 C -0.550 4.550 8 H 0.092 0.908 9 C -0.003 4.003 10 C -0.173 4.173 11 C -0.014 4.014 12 N -0.355 5.355 13 C 0.410 3.590 14 O -0.477 6.477 15 N -0.413 5.413 16 C 0.064 3.936 17 C -0.163 4.163 18 C -0.166 4.166 19 C -0.212 4.212 20 H 0.143 0.857 21 C 0.000 4.000 22 O -0.263 6.263 23 C 0.081 3.919 24 C -0.165 4.165 25 C -0.173 4.173 26 C -0.189 4.189 27 C 0.005 3.995 28 C -0.152 4.152 29 H 0.073 0.927 30 H 0.046 0.954 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.232 0.768 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.123 0.877 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.082 0.918 42 H 0.117 0.883 43 H 0.099 0.901 44 H 0.102 0.898 45 H 0.090 0.910 46 H 0.091 0.909 47 H 0.111 0.889 48 H 0.078 0.922 49 H 0.103 0.897 50 H 0.088 0.912 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 21.735 0.721 -13.030 25.352 hybrid contribution -0.116 1.795 -0.007 1.798 sum 21.618 2.515 -13.037 25.370 Atomic orbital electron populations 1.69901 1.06298 1.26927 1.50730 1.25057 0.94706 0.99046 0.94588 0.86863 0.80029 0.83710 0.77724 1.20638 1.22449 1.18986 1.21054 0.88737 0.94506 1.50730 0.90810 1.19112 0.96783 0.91819 0.92615 1.22378 0.91311 1.01084 1.02488 1.21773 0.97134 0.82387 1.00119 1.47313 1.43981 1.14887 1.29343 1.15766 0.79719 0.83865 0.79620 1.90873 1.59380 1.20491 1.76923 1.45354 1.54194 1.18132 1.23620 1.20299 0.93908 0.93700 0.85652 1.23296 1.01220 0.93101 0.98667 1.23131 1.00396 0.92977 1.00086 1.24387 0.96915 1.05985 0.93925 0.85692 1.22906 0.96016 0.87901 0.93193 1.89050 1.51360 1.43360 1.42503 1.21965 0.88624 0.98023 0.83310 1.22959 0.95742 0.96033 1.01758 1.22839 0.98254 0.95699 1.00500 1.23294 0.95569 0.97690 1.02298 1.21655 0.95515 0.95511 0.86857 1.21851 0.92005 0.99431 1.01962 0.92651 0.95371 0.91644 0.92475 0.91730 0.92244 0.76785 0.90783 0.90973 0.87745 0.88099 0.88227 0.91835 0.88265 0.90104 0.89841 0.91006 0.90917 0.88861 0.92220 0.89744 0.91238 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.95 13.96 55.43 0.77 -26.18 16 2 C 0.07 1.88 5.45 -17.82 -0.10 1.78 16 3 Si 0.89 20.74 24.39 -169.99 -4.15 16.60 16 4 H -0.28 -6.26 6.85 56.52 0.39 -5.87 16 5 H -0.30 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.26 -5.81 6.53 56.52 0.37 -5.45 16 7 C -0.51 -13.84 9.14 -34.44 -0.31 -14.15 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C 0.02 0.34 1.66 -91.74 -0.15 0.19 16 10 C -0.13 -2.64 4.85 -26.61 -0.13 -2.77 16 11 C 0.11 1.72 6.43 -3.71 -0.02 1.69 16 12 N -0.62 -10.35 2.97 -178.50 -0.53 -10.88 16 13 C 0.71 11.92 8.30 -86.91 -0.72 11.20 16 14 O -0.60 -11.84 15.79 5.29 0.08 -11.75 16 15 N -0.75 -9.86 5.23 -65.22 -0.34 -10.20 16 16 C 0.19 2.19 4.94 -4.04 -0.02 2.17 16 17 C -0.16 -1.51 2.74 -153.31 -0.42 -1.93 16 18 C -0.13 -1.02 9.08 -26.72 -0.24 -1.26 16 19 C -0.19 -1.74 6.71 -88.89 -0.60 -2.34 16 20 H 0.13 1.20 8.14 -51.93 -0.42 0.78 16 21 C 0.08 0.65 7.46 37.97 0.28 0.94 16 22 O -0.34 -3.69 11.44 -35.23 -0.40 -4.09 16 23 C 0.12 1.10 1.04 -90.54 -0.09 1.01 16 24 C -0.13 -1.07 7.03 -26.33 -0.19 -1.26 16 25 C -0.14 -0.97 8.09 -25.74 -0.21 -1.18 16 26 C -0.15 -1.11 6.98 -26.32 -0.18 -1.29 16 27 C 0.13 2.17 6.42 -3.72 -0.02 2.15 16 28 C -0.11 -2.21 5.30 -26.61 -0.14 -2.35 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.03 0.63 7.19 -51.93 -0.37 0.26 16 31 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 32 H 0.06 1.18 3.26 -51.93 -0.17 1.01 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.76 5.56 -51.93 -0.29 0.47 16 35 H 0.39 4.49 3.56 -40.82 -0.15 4.35 16 36 H 0.07 0.86 7.32 -51.93 -0.38 0.48 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.10 0.80 6.52 -51.93 -0.34 0.47 16 39 H 0.10 0.67 7.78 -51.93 -0.40 0.27 16 40 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.10 0.79 6.84 -51.93 -0.36 0.43 16 43 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 49 H 0.08 1.46 7.04 -51.93 -0.37 1.09 16 50 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 51 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 381.22 15.07 5.74 5.74 Total: -1.00 -31.97 381.22 -10.43 -42.39 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -8.34 Total: 5.76 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -3.27 Total: -7.40 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: -0.10 Total: -47.25 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.32 Total: -15.84 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.15 Total: 16.60 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.97 -10.43 -42.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898681507.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.424 kcal (2) G-P(sol) polarization free energy of solvation -31.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds