Wall clock time and date at job start Tue Mar 31 2020 19:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99706 * 2 1 4 4 H 1.48498 * 109.47353 * 269.72489 * 3 2 1 5 5 H 1.48501 * 109.47056 * 29.72463 * 3 2 1 6 6 H 1.48502 * 109.47258 * 149.72203 * 3 2 1 7 7 C 1.37874 * 120.00540 * 179.72382 * 2 1 3 8 8 H 1.08002 * 119.99803 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00421 * 180.02562 * 7 2 1 10 10 C 1.53035 * 109.45917 * 300.02623 * 9 7 2 11 11 C 1.53195 * 109.31466 * 178.60116 * 10 9 7 12 12 N 1.46927 * 108.76390 * 54.65285 * 11 10 9 13 13 C 1.34783 * 120.62538 * 126.40725 * 12 11 10 14 14 O 1.21585 * 119.99693 * 174.93908 * 13 12 11 15 15 N 1.34777 * 120.00018 * 354.94066 * 13 12 11 16 16 C 1.46495 * 119.99438 * 185.07203 * 15 13 12 17 17 C 1.53004 * 109.47280 * 180.02562 * 16 15 13 18 18 C 1.53005 * 119.67346 * 25.52172 * 17 16 15 19 19 C 1.53016 * 60.74067 * 247.83541 * 18 17 16 20 20 H 1.08995 * 119.83089 * 112.33560 * 19 18 17 21 21 C 1.54556 * 118.48197 * 269.86932 * 19 18 17 22 22 O 1.44622 * 104.97441 * 86.67413 * 21 19 18 23 23 C 1.43436 * 105.17621 * 320.65317 * 22 21 19 24 24 C 1.52807 * 115.64324 * 168.60253 * 23 22 21 25 25 C 1.53966 * 86.79180 * 92.97789 * 24 23 22 26 26 C 1.52821 * 115.83031 * 269.61719 * 23 22 21 27 27 C 1.46917 * 118.73908 * 306.38805 * 12 11 10 28 28 C 1.53042 * 109.46161 * 179.97438 * 9 7 2 29 29 H 0.97000 * 120.00086 * 0.27623 * 1 2 3 30 30 H 1.08998 * 109.46118 * 59.99930 * 9 7 2 31 31 H 1.09002 * 109.50362 * 298.56535 * 10 9 7 32 32 H 1.09007 * 109.50272 * 58.66376 * 10 9 7 33 33 H 1.09003 * 109.59916 * 294.86543 * 11 10 9 34 34 H 1.08997 * 109.70531 * 174.50779 * 11 10 9 35 35 H 0.96993 * 120.00375 * 5.07395 * 15 13 12 36 36 H 1.09004 * 109.47667 * 300.00209 * 16 15 13 37 37 H 1.09005 * 109.47677 * 60.00305 * 16 15 13 38 38 H 1.08994 * 117.42704 * 355.53749 * 18 17 16 39 39 H 1.09002 * 117.41777 * 140.13535 * 18 17 16 40 40 H 1.08999 * 110.33453 * 205.54743 * 21 19 18 41 41 H 1.08998 * 110.34244 * 327.69277 * 21 19 18 42 42 H 1.09004 * 113.66154 * 207.45082 * 24 23 22 43 43 H 1.08999 * 113.66243 * 338.50614 * 24 23 22 44 44 H 1.08996 * 113.58195 * 270.11870 * 25 24 23 45 45 H 1.08998 * 113.65764 * 139.31536 * 25 24 23 46 46 H 1.08996 * 113.66161 * 21.66371 * 26 23 22 47 47 H 1.09000 * 113.66122 * 152.72370 * 26 23 22 48 48 H 1.09005 * 109.58480 * 293.81786 * 27 12 11 49 49 H 1.08999 * 109.58580 * 173.39440 * 27 12 11 50 50 H 1.08993 * 109.49605 * 301.33658 * 28 9 7 51 51 H 1.08997 * 109.49629 * 61.43621 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5024 2.0432 -1.4000 5 1 1.4436 2.6543 0.6942 6 1 3.5437 1.4420 0.7059 7 6 2.0047 -1.1939 0.0058 8 1 1.4647 -2.1293 0.0107 9 6 3.5116 -1.1939 0.0063 10 6 4.0219 -0.4776 -1.2461 11 6 5.5534 -0.4488 -1.2247 12 7 6.0499 -1.8231 -1.0714 13 6 6.9445 -2.3311 -1.9421 14 8 7.4172 -3.4353 -1.7532 15 7 7.3151 -1.6152 -3.0222 16 6 8.2008 -2.2097 -4.0262 17 6 8.4642 -1.1938 -5.1396 18 6 8.3542 0.3028 -4.8410 19 6 7.3313 -0.3512 -5.7723 20 1 6.2915 -0.4408 -5.4581 21 6 7.6343 -0.3922 -7.2873 22 8 8.4170 -1.5930 -7.4795 23 6 9.2942 -1.6548 -6.3463 24 6 10.0453 -2.9728 -6.1626 25 6 11.1898 -2.3332 -6.9698 26 6 10.6481 -0.9660 -6.5140 27 6 5.5530 -2.6328 0.0493 28 6 4.0215 -2.6369 0.0138 29 1 -0.4850 0.8400 -0.0040 30 1 3.8744 -0.6760 0.8941 31 1 3.6802 -1.0094 -2.1341 32 1 3.6393 0.5430 -1.2629 33 1 5.8961 0.1591 -0.3873 34 1 5.9261 -0.0276 -2.1584 35 1 6.9954 -0.7064 -3.1347 36 1 9.1451 -2.4885 -3.5584 37 1 7.7284 -3.0970 -4.4479 38 1 8.0145 0.5927 -3.8467 39 1 9.0962 0.9608 -5.2933 40 1 6.7072 -0.4489 -7.8576 41 1 8.2071 0.4868 -7.5831 42 1 10.3071 -3.1863 -5.1262 43 1 9.5750 -3.8180 -6.6650 44 1 11.1104 -2.4976 -8.0443 45 1 12.1814 -2.5617 -6.5791 46 1 10.6593 -0.2080 -7.2971 47 1 11.0794 -0.6151 -5.5765 48 1 5.8956 -2.2030 0.9907 49 1 5.9234 -3.6536 -0.0449 50 1 3.6386 -3.1534 0.8938 51 1 3.6799 -3.1481 -0.8862 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898681507.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:47 Heat of formation + Delta-G solvation = -22.088526 kcal Electronic energy + Delta-G solvation = -30227.214140 eV Core-core repulsion = 26321.061581 eV Total energy + Delta-G solvation = -3906.152559 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.41975 -41.34409 -38.81264 -37.77322 -36.66263 -35.36223 -34.64450 -33.29298 -32.02170 -29.62630 -28.20619 -27.34126 -26.46210 -25.81185 -24.32654 -24.20978 -22.50073 -21.85442 -21.01867 -20.68755 -19.86332 -19.20778 -18.77532 -17.45295 -17.17063 -16.81973 -16.70173 -16.60985 -16.23800 -15.59574 -15.50520 -15.35777 -15.20084 -14.88952 -14.85599 -14.49520 -14.24385 -14.18509 -13.98582 -13.74276 -13.45375 -13.41814 -13.26007 -13.20162 -12.80502 -12.29507 -12.27221 -12.11246 -11.88738 -11.81663 -11.71740 -11.50427 -11.47864 -11.34226 -11.13851 -11.07277 -11.04831 -11.01942 -10.64898 -10.41422 -10.14384 -9.45991 -8.27171 -6.32602 1.31710 1.40270 1.50273 1.58078 2.09010 2.32871 2.35724 2.75249 2.82712 3.07579 3.28457 3.44993 3.46658 3.68414 3.83421 3.89367 3.94638 3.98255 4.03003 4.09958 4.18015 4.24951 4.34543 4.44724 4.50223 4.51979 4.56025 4.70227 4.71531 4.72915 4.76417 4.80749 4.81474 4.82213 4.88875 4.95997 5.03565 5.04150 5.05214 5.09198 5.11764 5.25190 5.32540 5.36875 5.41350 5.55431 5.67642 5.74047 5.91422 5.93732 6.32568 6.74683 6.87495 7.32906 7.47697 8.90037 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017536 B = 0.002958 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.311009 B = 9465.001933 C =10389.212306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.004 3.996 3 Si 0.953 3.047 4 H -0.258 1.258 5 H -0.305 1.305 6 H -0.233 1.233 7 C -0.521 4.521 8 H 0.024 0.976 9 C 0.015 3.985 10 C -0.131 4.131 11 C 0.115 3.885 12 N -0.622 5.622 13 C 0.705 3.295 14 O -0.631 6.631 15 N -0.737 5.737 16 C 0.192 3.808 17 C -0.169 4.169 18 C -0.110 4.110 19 C -0.200 4.200 20 H 0.117 0.883 21 C 0.073 3.927 22 O -0.369 6.369 23 C 0.115 3.885 24 C -0.136 4.136 25 C -0.131 4.131 26 C -0.141 4.141 27 C 0.136 3.864 28 C -0.107 4.107 29 H 0.264 0.736 30 H 0.035 0.965 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.404 0.596 36 H 0.075 0.925 37 H 0.050 0.950 38 H 0.112 0.888 39 H 0.120 0.880 40 H 0.102 0.898 41 H 0.081 0.919 42 H 0.102 0.898 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.077 0.923 47 H 0.105 0.895 48 H 0.081 0.919 49 H 0.080 0.920 50 H 0.067 0.933 51 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.988 4.331 -13.437 28.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.193 4.193 3 Si 0.779 3.221 4 H -0.184 1.184 5 H -0.233 1.233 6 H -0.156 1.156 7 C -0.559 4.559 8 H 0.043 0.957 9 C -0.004 4.004 10 C -0.169 4.169 11 C -0.008 4.008 12 N -0.358 5.358 13 C 0.407 3.593 14 O -0.513 6.513 15 N -0.397 5.397 16 C 0.068 3.932 17 C -0.170 4.170 18 C -0.147 4.147 19 C -0.218 4.218 20 H 0.135 0.865 21 C -0.003 4.003 22 O -0.288 6.288 23 C 0.075 3.925 24 C -0.173 4.173 25 C -0.168 4.168 26 C -0.179 4.179 27 C 0.013 3.987 28 C -0.146 4.146 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.113 0.887 35 H 0.244 0.756 36 H 0.093 0.907 37 H 0.069 0.931 38 H 0.130 0.870 39 H 0.138 0.862 40 H 0.120 0.880 41 H 0.099 0.901 42 H 0.120 0.880 43 H 0.085 0.915 44 H 0.097 0.903 45 H 0.103 0.897 46 H 0.096 0.904 47 H 0.124 0.876 48 H 0.099 0.901 49 H 0.099 0.901 50 H 0.085 0.915 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 25.156 3.452 -13.509 28.762 hybrid contribution -1.299 0.782 0.120 1.521 sum 23.857 4.233 -13.390 27.683 Atomic orbital electron populations 1.70086 1.08626 1.28076 1.52818 1.26052 0.95502 1.03626 0.94088 0.85778 0.79551 0.77676 0.79083 1.18414 1.23312 1.15601 1.21382 0.91726 0.92731 1.50057 0.95737 1.19077 0.93270 0.93800 0.94234 1.22210 0.94505 1.00060 1.00166 1.21815 0.93871 0.82118 1.03008 1.47324 1.43959 1.15309 1.29221 1.15920 0.79652 0.83611 0.80131 1.90854 1.60610 1.22071 1.77734 1.45239 1.53682 1.18261 1.22547 1.20271 0.93266 0.93811 0.85877 1.23195 1.02049 0.93588 0.98178 1.23247 0.99720 0.91625 1.00100 1.24431 0.96630 1.06384 0.94404 0.86502 1.23034 0.96335 0.87859 0.93066 1.89026 1.52065 1.44458 1.43264 1.22108 0.89083 0.98630 0.82726 1.23024 0.96524 0.95682 1.02068 1.22817 0.98421 0.95526 1.00084 1.23273 0.93957 0.97608 1.03015 1.21510 0.93136 0.95953 0.88115 1.21729 0.94136 0.97751 1.00962 0.92680 0.94678 0.93094 0.92705 0.89595 0.88749 0.75567 0.90675 0.93127 0.87004 0.86226 0.87956 0.90122 0.87973 0.91466 0.90280 0.89650 0.90392 0.87633 0.90118 0.90109 0.91481 0.94319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.21 13.96 21.45 0.30 -58.91 16 2 C 0.00 0.20 5.45 84.65 0.46 0.66 16 3 Si 0.95 41.60 24.39 68.60 1.67 43.27 16 4 H -0.26 -10.37 6.85 99.48 0.68 -9.69 16 5 H -0.30 -13.66 7.11 99.48 0.71 -12.96 16 6 H -0.23 -8.90 6.53 99.48 0.65 -8.25 16 7 C -0.52 -28.95 9.14 25.60 0.23 -28.72 16 8 H 0.02 1.54 7.99 -2.91 -0.02 1.52 16 9 C 0.02 0.65 1.66 -11.52 -0.02 0.63 16 10 C -0.13 -4.82 4.85 30.67 0.15 -4.68 16 11 C 0.11 3.12 6.43 86.36 0.56 3.67 16 12 N -0.62 -19.12 2.97 -836.92 -2.49 -21.61 16 13 C 0.71 22.27 8.30 179.05 1.49 23.75 16 14 O -0.63 -24.35 15.79 -3.98 -0.06 -24.42 16 15 N -0.74 -17.43 5.23 -478.52 -2.50 -19.93 16 16 C 0.19 4.16 4.94 86.38 0.43 4.59 16 17 C -0.17 -2.78 2.74 -51.41 -0.14 -2.92 16 18 C -0.11 -1.31 9.08 30.60 0.28 -1.03 16 19 C -0.20 -3.11 6.71 -9.67 -0.06 -3.17 16 20 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 21 C 0.07 1.11 7.46 72.51 0.54 1.65 16 22 O -0.37 -7.48 11.44 -148.98 -1.70 -9.18 16 23 C 0.11 1.89 1.04 -10.74 -0.01 1.88 16 24 C -0.14 -2.17 7.03 30.86 0.22 -1.96 16 25 C -0.13 -1.65 8.09 31.24 0.25 -1.39 16 26 C -0.14 -1.68 6.98 30.86 0.22 -1.46 16 27 C 0.14 4.40 6.42 86.36 0.55 4.95 16 28 C -0.11 -4.14 5.30 30.67 0.16 -3.98 16 29 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 30 H 0.04 1.48 7.19 -2.39 -0.02 1.46 16 31 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.05 2.06 3.26 -2.38 -0.01 2.05 16 33 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.09 1.93 5.56 -2.39 -0.01 1.91 16 35 H 0.40 7.70 3.56 -92.71 -0.33 7.37 16 36 H 0.08 1.63 7.32 -2.38 -0.02 1.62 16 37 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.11 1.18 6.52 -2.39 -0.02 1.17 16 39 H 0.12 1.03 7.78 -2.39 -0.02 1.01 16 40 H 0.10 1.43 8.14 -2.39 -0.02 1.42 16 41 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.10 1.53 6.84 -2.38 -0.02 1.51 16 43 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 49 H 0.08 2.71 7.04 -2.39 -0.02 2.69 16 50 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 51 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -72.37 381.22 1.03 -71.34 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: 0.52 Total: 26.97 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: 5.30 Total: -7.53 kcal Atomic # 7 Polarization: -95.76 SS G_CDS: -4.69 Total: -100.45 kcal Atomic # 8 Polarization: -31.83 SS G_CDS: -1.77 Total: -33.60 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 1.67 Total: 43.27 kcal Total: -72.37 1.03 -71.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898681507.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.249 kcal (2) G-P(sol) polarization free energy of solvation -72.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds