Wall clock time and date at job start Tue Mar 31 2020 18:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.46742 * 2 1 4 4 C 1.37611 * 127.15626 * 271.00671 * 3 2 1 5 5 C 1.47861 * 126.46175 * 359.97438 * 4 3 2 6 6 N 1.35369 * 126.43898 * 179.71558 * 5 4 3 7 7 C 1.30932 * 105.57840 * 179.88093 * 6 5 4 8 8 O 1.33687 * 107.17761 * 0.37470 * 7 6 5 9 9 N 1.21291 * 110.07696 * 359.75145 * 8 7 6 10 10 N 1.31259 * 107.07106 * 179.97438 * 4 3 2 11 11 N 1.28523 * 109.90891 * 359.76357 * 10 4 3 12 12 C 1.31532 * 110.05474 * 0.39435 * 11 10 4 13 13 N 1.38255 * 126.36642 * 179.88014 * 12 11 10 14 14 C 1.46893 * 110.99837 * 253.70253 * 13 12 11 15 15 C 1.50701 * 109.47123 * 199.84362 * 14 13 12 16 16 H 1.08001 * 119.99830 * 4.89703 * 15 14 13 17 17 C 1.37872 * 120.00512 * 184.89813 * 15 14 13 18 18 N 1.31524 * 119.99772 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00592 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46744 * 59.99533 * 19 17 15 21 21 H 1.48491 * 109.47558 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46875 * 299.99981 * 19 17 15 23 23 C 1.46901 * 110.99672 * 17.65815 * 13 12 11 24 24 C 1.52995 * 109.47484 * 75.64861 * 23 13 12 25 25 C 1.52997 * 109.47512 * 175.06849 * 24 23 13 26 26 C 1.52996 * 109.46889 * 64.99827 * 25 24 23 27 27 C 1.52997 * 109.47375 * 184.99950 * 25 24 23 28 28 H 1.08997 * 109.47330 * 59.99770 * 1 2 3 29 29 H 1.09005 * 109.47046 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46915 * 299.99435 * 1 2 3 31 31 H 1.09002 * 109.46915 * 240.00565 * 2 1 3 32 32 H 1.08993 * 109.47346 * 120.00743 * 2 1 3 33 33 H 1.07989 * 126.41051 * 180.16504 * 7 6 5 34 34 H 1.09005 * 109.47700 * 319.84488 * 14 13 12 35 35 H 1.09000 * 109.47500 * 79.84798 * 14 13 12 36 36 H 0.96994 * 119.99891 * 179.97438 * 18 17 15 37 37 H 1.09005 * 109.47070 * 315.64316 * 23 13 12 38 38 H 1.08999 * 109.46781 * 195.65022 * 23 13 12 39 39 H 1.09002 * 109.47033 * 55.06857 * 24 23 13 40 40 H 1.08999 * 109.47165 * 295.07115 * 24 23 13 41 41 H 1.09000 * 109.47314 * 305.00389 * 25 24 23 42 42 H 1.09000 * 109.47394 * 60.00402 * 26 25 24 43 43 H 1.09000 * 109.47233 * 180.02562 * 26 25 24 44 44 H 1.08997 * 109.47914 * 300.00387 * 26 25 24 45 45 H 1.09007 * 109.47133 * 60.00419 * 27 25 24 46 46 H 1.08997 * 109.47035 * 179.97438 * 27 25 24 47 47 H 1.08995 * 109.47440 * 300.00042 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2771 2.1713 -1.0966 5 6 2.1151 1.7863 -2.5149 6 7 2.3648 2.5656 -3.5932 7 6 2.0886 1.8228 -4.6355 8 8 1.6778 0.6362 -4.1769 9 7 1.6978 0.6288 -2.9642 10 7 2.6949 3.3311 -0.6459 11 7 2.7098 3.3217 0.6392 12 6 2.3100 2.1511 1.0863 13 7 2.2004 1.7737 2.4119 14 6 3.2789 0.8497 2.7871 15 6 2.8821 0.0915 4.0275 16 1 1.8943 0.2189 4.4454 17 6 3.7798 -0.7648 4.6290 18 7 4.9824 -0.9203 4.1198 19 14 3.2876 -1.7052 6.1661 20 1 2.1161 -2.5668 5.8653 21 1 4.4230 -2.5510 6.6138 22 1 2.9324 -0.7446 7.2415 23 6 2.1827 2.9483 3.2939 24 6 0.8125 3.6244 3.2155 25 6 0.7522 4.7733 4.2241 26 6 1.7600 5.8538 3.8271 27 6 -0.6569 5.3693 4.2346 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8898 33 1 2.1733 2.1153 -5.6716 34 1 3.4553 0.1470 1.9726 35 1 4.1901 1.4151 2.9828 36 1 5.6141 -1.5224 4.5431 37 1 2.9535 3.6514 2.9781 38 1 2.3751 2.6350 4.3200 39 1 0.0345 2.8968 3.4467 40 1 0.6571 4.0152 2.2099 41 1 0.9951 4.3975 5.2179 42 1 1.5171 6.2298 2.8332 43 1 1.7174 6.6721 4.5458 44 1 2.7639 5.4293 3.8195 45 1 -1.3750 4.5995 4.5175 46 1 -0.7000 6.1875 4.9534 47 1 -0.8999 5.7452 3.2408 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908893519.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:04 Heat of formation + Delta-G solvation = 149.733387 kcal Electronic energy + Delta-G solvation = -29857.033039 eV Core-core repulsion = 25887.083645 eV Total energy + Delta-G solvation = -3969.949394 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.78975 -42.60495 -37.71901 -36.09007 -35.75680 -35.21474 -32.87986 -32.60703 -30.40672 -29.72489 -29.01300 -26.94207 -26.62324 -25.05776 -24.25829 -23.56053 -23.10644 -22.28843 -21.13297 -19.95607 -19.55562 -18.33349 -18.27957 -16.94240 -16.71531 -15.99138 -15.68729 -15.39136 -15.09464 -14.94505 -14.69152 -14.10476 -13.92471 -13.42488 -13.04818 -12.98304 -12.91044 -12.75390 -12.33049 -12.25504 -12.18108 -11.99081 -11.89204 -11.36165 -11.32832 -11.25169 -11.12944 -11.04548 -10.87280 -10.79973 -10.76321 -10.44671 -10.36617 -10.31237 -10.16960 -10.07782 -9.85116 -9.63408 -8.93911 -8.61571 -7.62263 -6.23441 -4.28508 0.76036 1.51266 2.27786 2.53287 2.77309 3.22251 3.25144 3.27669 3.29970 3.34549 3.78590 4.19754 4.41709 4.70174 4.90684 5.09912 5.12006 5.15318 5.21347 5.22764 5.26053 5.39312 5.45640 5.60657 5.68058 5.70351 5.80787 5.82656 5.87622 5.97085 6.00207 6.07514 6.12846 6.18406 6.23405 6.31531 6.36979 6.43921 6.49904 6.66156 6.74863 6.81966 6.95907 7.03073 7.51411 7.65684 7.83630 7.89061 8.17072 8.78550 8.98388 9.37432 10.86678 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.008762 B = 0.004344 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3194.806970 B = 6444.562871 C = 8626.101179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.102 3.898 3 N -0.456 5.456 4 C 0.200 3.800 5 C 0.272 3.728 6 N -0.452 5.452 7 C 0.163 3.837 8 O 0.084 5.916 9 N -0.370 5.370 10 N -0.220 5.220 11 N -0.328 5.328 12 C 0.411 3.589 13 N -0.457 5.457 14 C 0.200 3.800 15 C -0.517 4.517 16 H 0.070 0.930 17 C 0.062 3.938 18 N -0.893 5.893 19 Si 0.903 3.097 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.071 3.929 24 C -0.108 4.108 25 C -0.093 4.093 26 C -0.146 4.146 27 C -0.144 4.144 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.115 0.885 33 H 0.268 0.732 34 H 0.026 0.974 35 H 0.017 0.983 36 H 0.266 0.734 37 H 0.058 0.942 38 H 0.095 0.905 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.053 0.947 43 H 0.046 0.954 44 H 0.060 0.940 45 H 0.051 0.949 46 H 0.050 0.950 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.922 4.587 -12.050 15.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.020 4.020 3 N -0.151 5.151 4 C -0.065 4.065 5 C 0.000 4.000 6 N -0.184 5.184 7 C -0.079 4.079 8 O 0.022 5.978 9 N -0.078 5.078 10 N -0.066 5.066 11 N -0.177 5.177 12 C 0.056 3.944 13 N -0.181 5.181 14 C 0.077 3.923 15 C -0.555 4.555 16 H 0.088 0.912 17 C -0.141 4.141 18 N -0.531 5.531 19 Si 0.730 3.270 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.200 1.200 23 C -0.055 4.055 24 C -0.146 4.146 25 C -0.112 4.112 26 C -0.203 4.203 27 C -0.201 4.201 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.133 0.867 33 H 0.284 0.716 34 H 0.044 0.956 35 H 0.035 0.965 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.114 0.886 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.079 0.921 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.787 5.280 -11.171 15.161 hybrid contribution 0.095 -1.578 0.313 1.612 sum -8.691 3.702 -10.857 14.392 Atomic orbital electron populations 1.22007 0.93724 1.03125 1.02579 1.22071 0.96079 0.78121 1.05717 1.46090 1.50051 1.14174 1.04814 1.19869 1.11966 0.90485 0.84191 1.21791 0.99907 0.86318 0.91976 1.72071 1.19657 1.29966 0.96740 1.30562 0.94317 0.80640 1.02354 1.85304 1.61449 1.35819 1.15182 1.75060 1.20851 1.20594 0.91264 1.74313 1.13301 1.15391 1.03588 1.74848 1.22658 1.18332 1.01889 1.22993 0.95019 0.87326 0.89062 1.58954 1.47914 1.17191 0.94010 1.19978 0.85901 0.89290 0.97087 1.20977 1.00146 1.24684 1.09737 0.91232 1.24982 0.94659 0.96758 0.97743 1.69948 1.05559 1.37146 1.40463 0.86474 0.78013 0.79764 0.82721 1.20035 1.21235 1.19952 1.22153 0.97210 0.89097 0.97077 1.21608 0.97539 0.96490 0.98938 1.21050 0.95110 0.95609 0.99476 1.21858 0.99601 0.97963 1.00921 1.21812 0.96645 1.00333 1.01302 0.92908 0.90350 0.91211 0.88903 0.86735 0.71632 0.95591 0.96510 0.92454 0.92347 0.88650 0.91789 0.92444 0.91112 0.92749 0.93459 0.92128 0.92945 0.93089 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 10.24 37.16 0.38 -1.79 16 2 C 0.10 1.67 6.37 -4.04 -0.03 1.64 16 3 N -0.46 -8.62 2.83 -114.72 -0.32 -8.95 16 4 C 0.20 3.80 8.00 -153.72 -1.23 2.57 16 5 C 0.27 4.31 8.03 -156.05 -1.25 3.06 16 6 N -0.45 -6.12 11.58 -13.73 -0.16 -6.28 16 7 C 0.16 1.27 13.38 52.07 0.70 1.96 16 8 O 0.08 0.84 11.29 17.99 0.20 1.04 16 9 N -0.37 -5.07 10.49 30.97 0.32 -4.75 16 10 N -0.22 -4.61 12.23 32.60 0.40 -4.21 16 11 N -0.33 -7.04 10.72 30.27 0.32 -6.71 16 12 C 0.41 8.52 6.22 -319.16 -1.98 6.54 16 13 N -0.46 -9.58 4.37 -175.95 -0.77 -10.35 16 14 C 0.20 4.90 4.38 -4.98 -0.02 4.88 16 15 C -0.52 -13.28 8.52 -34.44 -0.29 -13.57 16 16 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -25.04 13.29 55.43 0.74 -24.30 16 19 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 21 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 23 C 0.07 1.36 4.19 -3.83 -0.02 1.35 16 24 C -0.11 -1.76 4.72 -26.74 -0.13 -1.89 16 25 C -0.09 -1.29 2.92 -90.63 -0.26 -1.56 16 26 C -0.15 -1.99 8.95 37.16 0.33 -1.66 16 27 C -0.14 -1.72 9.19 37.16 0.34 -1.38 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.09 1.41 6.75 -51.93 -0.35 1.06 16 32 H 0.11 2.06 6.54 -51.93 -0.34 1.72 16 33 H 0.27 0.27 8.06 -52.49 -0.42 -0.15 16 34 H 0.03 0.67 6.50 -51.93 -0.34 0.34 16 35 H 0.02 0.46 8.00 -51.93 -0.42 0.04 16 36 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 37 H 0.06 1.15 5.96 -51.93 -0.31 0.85 16 38 H 0.10 1.89 7.31 -51.93 -0.38 1.51 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.06 1.01 7.60 -51.93 -0.39 0.61 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.88 6.68 -51.93 -0.35 0.54 16 45 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 389.14 15.07 5.86 5.86 Total: -1.00 -31.84 389.14 -9.05 -40.89 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -7.07 Total: 0.77 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -3.56 Total: 1.69 kcal Atomic # 7 Polarization: -66.08 SS G_CDS: 0.53 Total: -65.55 kcal Atomic # 8 Polarization: 0.84 SS G_CDS: 0.20 Total: 1.04 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.84 -9.05 -40.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908893519.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.627 kcal (2) G-P(sol) polarization free energy of solvation -31.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds