Wall clock time and date at job start Tue Mar 31 2020 18:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.46742 * 2 1 4 4 C 1.37611 * 127.15626 * 271.00671 * 3 2 1 5 5 C 1.47861 * 126.46175 * 359.97438 * 4 3 2 6 6 N 1.35369 * 126.43898 * 179.71558 * 5 4 3 7 7 C 1.30932 * 105.57840 * 179.88093 * 6 5 4 8 8 O 1.33687 * 107.17761 * 0.37470 * 7 6 5 9 9 N 1.21291 * 110.07696 * 359.75145 * 8 7 6 10 10 N 1.31259 * 107.07106 * 179.97438 * 4 3 2 11 11 N 1.28523 * 109.90891 * 359.76357 * 10 4 3 12 12 C 1.31532 * 110.05474 * 0.39435 * 11 10 4 13 13 N 1.38255 * 126.36642 * 179.88014 * 12 11 10 14 14 C 1.46893 * 110.99837 * 253.70253 * 13 12 11 15 15 C 1.50701 * 109.47123 * 199.84362 * 14 13 12 16 16 H 1.08001 * 119.99830 * 4.89703 * 15 14 13 17 17 C 1.37872 * 120.00512 * 184.89813 * 15 14 13 18 18 N 1.31524 * 119.99772 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00592 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46744 * 59.99533 * 19 17 15 21 21 H 1.48491 * 109.47558 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46875 * 299.99981 * 19 17 15 23 23 C 1.46901 * 110.99672 * 17.65815 * 13 12 11 24 24 C 1.52995 * 109.47484 * 75.64861 * 23 13 12 25 25 C 1.52997 * 109.47512 * 175.06849 * 24 23 13 26 26 C 1.52996 * 109.46889 * 64.99827 * 25 24 23 27 27 C 1.52997 * 109.47375 * 184.99950 * 25 24 23 28 28 H 1.08997 * 109.47330 * 59.99770 * 1 2 3 29 29 H 1.09005 * 109.47046 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46915 * 299.99435 * 1 2 3 31 31 H 1.09002 * 109.46915 * 240.00565 * 2 1 3 32 32 H 1.08993 * 109.47346 * 120.00743 * 2 1 3 33 33 H 1.07989 * 126.41051 * 180.16504 * 7 6 5 34 34 H 1.09005 * 109.47700 * 319.84488 * 14 13 12 35 35 H 1.09000 * 109.47500 * 79.84798 * 14 13 12 36 36 H 0.96994 * 119.99891 * 179.97438 * 18 17 15 37 37 H 1.09005 * 109.47070 * 315.64316 * 23 13 12 38 38 H 1.08999 * 109.46781 * 195.65022 * 23 13 12 39 39 H 1.09002 * 109.47033 * 55.06857 * 24 23 13 40 40 H 1.08999 * 109.47165 * 295.07115 * 24 23 13 41 41 H 1.09000 * 109.47314 * 305.00389 * 25 24 23 42 42 H 1.09000 * 109.47394 * 60.00402 * 26 25 24 43 43 H 1.09000 * 109.47233 * 180.02562 * 26 25 24 44 44 H 1.08997 * 109.47914 * 300.00387 * 26 25 24 45 45 H 1.09007 * 109.47133 * 60.00419 * 27 25 24 46 46 H 1.08997 * 109.47035 * 179.97438 * 27 25 24 47 47 H 1.08995 * 109.47440 * 300.00042 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2771 2.1713 -1.0966 5 6 2.1151 1.7863 -2.5149 6 7 2.3648 2.5656 -3.5932 7 6 2.0886 1.8228 -4.6355 8 8 1.6778 0.6362 -4.1769 9 7 1.6978 0.6288 -2.9642 10 7 2.6949 3.3311 -0.6459 11 7 2.7098 3.3217 0.6392 12 6 2.3100 2.1511 1.0863 13 7 2.2004 1.7737 2.4119 14 6 3.2789 0.8497 2.7871 15 6 2.8821 0.0915 4.0275 16 1 1.8943 0.2189 4.4454 17 6 3.7798 -0.7648 4.6290 18 7 4.9824 -0.9203 4.1198 19 14 3.2876 -1.7052 6.1661 20 1 2.1161 -2.5668 5.8653 21 1 4.4230 -2.5510 6.6138 22 1 2.9324 -0.7446 7.2415 23 6 2.1827 2.9483 3.2939 24 6 0.8125 3.6244 3.2155 25 6 0.7522 4.7733 4.2241 26 6 1.7600 5.8538 3.8271 27 6 -0.6569 5.3693 4.2346 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8898 33 1 2.1733 2.1153 -5.6716 34 1 3.4553 0.1470 1.9726 35 1 4.1901 1.4151 2.9828 36 1 5.6141 -1.5224 4.5431 37 1 2.9535 3.6514 2.9781 38 1 2.3751 2.6350 4.3200 39 1 0.0345 2.8968 3.4467 40 1 0.6571 4.0152 2.2099 41 1 0.9951 4.3975 5.2179 42 1 1.5171 6.2298 2.8332 43 1 1.7174 6.6721 4.5458 44 1 2.7639 5.4293 3.8195 45 1 -1.3750 4.5995 4.5175 46 1 -0.7000 6.1875 4.9534 47 1 -0.8999 5.7452 3.2408 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908893519.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:03 Heat of formation + Delta-G solvation = 130.492781 kcal Electronic energy + Delta-G solvation = -29857.867375 eV Core-core repulsion = 25887.083645 eV Total energy + Delta-G solvation = -3970.783729 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -46.77947 -44.15372 -39.28938 -37.17219 -37.11097 -36.55869 -34.81031 -33.69365 -31.75168 -31.22937 -30.61119 -28.39784 -27.97869 -26.34874 -25.49673 -24.64549 -24.62003 -24.06153 -22.39675 -21.47585 -20.81147 -19.37548 -19.29873 -18.75760 -18.23200 -17.41139 -17.18848 -16.84426 -16.61450 -16.21117 -15.96628 -15.62634 -15.25005 -14.90673 -14.49799 -14.35126 -14.29146 -13.90674 -13.75072 -13.69506 -13.41929 -13.25018 -13.05811 -12.91547 -12.74561 -12.65725 -12.49908 -12.39729 -12.34008 -12.21483 -12.18489 -12.03903 -11.71910 -11.66600 -11.51823 -11.44875 -11.43567 -11.31519 -10.68605 -10.49056 -9.30566 -8.27986 -6.40607 -0.34056 0.52273 0.86465 1.13936 1.43604 1.45481 1.53792 1.77637 1.99959 2.19341 2.36464 2.77666 2.84942 3.06134 3.50973 3.62585 3.78082 3.90552 3.95651 4.02044 4.09916 4.17056 4.23193 4.32821 4.46813 4.57575 4.61321 4.65465 4.70089 4.78508 4.80983 4.86250 4.88417 4.90643 4.91550 4.99614 5.02586 5.04807 5.16579 5.18621 5.31280 5.37775 5.49434 5.54009 5.60695 5.82676 5.87402 6.32900 6.72472 6.99519 7.30040 7.41101 8.83006 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.008762 B = 0.004344 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3194.806970 B = 6444.562871 C = 8626.101179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.101 3.899 3 N -0.456 5.456 4 C 0.217 3.783 5 C 0.234 3.766 6 N -0.493 5.493 7 C 0.204 3.796 8 O 0.107 5.893 9 N -0.372 5.372 10 N -0.255 5.255 11 N -0.344 5.344 12 C 0.391 3.609 13 N -0.451 5.451 14 C 0.220 3.780 15 C -0.522 4.522 16 H 0.074 0.926 17 C 0.012 3.988 18 N -0.932 5.932 19 Si 0.972 3.028 20 H -0.264 1.264 21 H -0.287 1.287 22 H -0.265 1.265 23 C 0.075 3.925 24 C -0.093 4.093 25 C -0.091 4.091 26 C -0.143 4.143 27 C -0.138 4.138 28 H 0.056 0.944 29 H 0.106 0.894 30 H 0.055 0.945 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.335 0.665 34 H 0.006 0.994 35 H -0.022 1.022 36 H 0.267 0.733 37 H 0.045 0.955 38 H 0.085 0.915 39 H 0.064 0.936 40 H 0.043 0.957 41 H 0.074 0.926 42 H 0.046 0.954 43 H 0.069 0.931 44 H 0.042 0.958 45 H 0.057 0.943 46 H 0.069 0.931 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.962 4.044 -13.342 17.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.020 4.020 3 N -0.151 5.151 4 C -0.050 4.050 5 C -0.037 4.037 6 N -0.225 5.225 7 C -0.035 4.035 8 O 0.039 5.961 9 N -0.076 5.076 10 N -0.100 5.100 11 N -0.192 5.192 12 C 0.035 3.965 13 N -0.175 5.175 14 C 0.096 3.904 15 C -0.560 4.560 16 H 0.093 0.907 17 C -0.187 4.187 18 N -0.571 5.571 19 Si 0.796 3.204 20 H -0.189 1.189 21 H -0.212 1.212 22 H -0.190 1.190 23 C -0.051 4.051 24 C -0.131 4.131 25 C -0.110 4.110 26 C -0.200 4.200 27 C -0.195 4.195 28 H 0.075 0.925 29 H 0.125 0.875 30 H 0.074 0.926 31 H 0.123 0.877 32 H 0.111 0.889 33 H 0.349 0.651 34 H 0.024 0.976 35 H -0.004 1.004 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.103 0.897 39 H 0.082 0.918 40 H 0.061 0.939 41 H 0.093 0.907 42 H 0.065 0.935 43 H 0.088 0.912 44 H 0.061 0.939 45 H 0.076 0.924 46 H 0.088 0.912 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.845 4.775 -12.444 17.183 hybrid contribution 0.756 -1.432 0.403 1.669 sum -10.089 3.343 -12.041 16.060 Atomic orbital electron populations 1.21939 0.91469 1.04766 1.02009 1.22211 0.97824 0.76774 1.05167 1.46315 1.49507 1.14828 1.04412 1.20427 1.09144 0.89664 0.85751 1.21611 1.03128 0.87847 0.91125 1.72025 1.21740 1.31383 0.97384 1.31895 0.89915 0.78262 1.03381 1.85279 1.60624 1.36596 1.13595 1.75061 1.19815 1.19809 0.92930 1.74234 1.15561 1.16938 1.03273 1.74739 1.22846 1.19034 1.02579 1.22942 0.96539 0.87849 0.89200 1.58941 1.46334 1.17532 0.94681 1.19558 0.85572 0.88989 0.96295 1.21210 1.00314 1.24582 1.09908 0.90739 1.25869 0.94412 0.97585 1.00868 1.70087 1.06808 1.38068 1.42151 0.85391 0.77813 0.78450 0.78770 1.18881 1.21209 1.19002 1.22157 0.98746 0.88296 0.95912 1.21486 0.95418 0.97125 0.99048 1.21059 0.96702 0.94678 0.98590 1.21821 0.98501 0.98497 1.01189 1.21762 0.95001 1.00962 1.01817 0.92537 0.87540 0.92561 0.87704 0.88854 0.65085 0.97601 1.00375 0.92424 0.93674 0.89687 0.91773 0.93857 0.90727 0.93496 0.91202 0.93906 0.92414 0.91206 0.93240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 10.24 71.98 0.74 -3.16 16 2 C 0.10 3.37 6.37 86.38 0.55 3.92 16 3 N -0.46 -17.94 2.83 -516.86 -1.46 -19.41 16 4 C 0.22 8.47 8.00 136.20 1.09 9.56 16 5 C 0.23 7.28 8.03 137.02 1.10 8.38 16 6 N -0.49 -12.48 11.58 -314.52 -3.64 -16.12 16 7 C 0.20 2.34 13.38 130.49 1.75 4.09 16 8 O 0.11 1.75 11.29 74.45 0.84 2.59 16 9 N -0.37 -9.53 10.49 -58.90 -0.62 -10.14 16 10 N -0.26 -11.19 12.23 -50.76 -0.62 -11.82 16 11 N -0.34 -15.64 10.72 -58.14 -0.62 -16.26 16 12 C 0.39 17.16 6.22 260.21 1.62 18.77 16 13 N -0.45 -20.04 4.37 -710.58 -3.11 -23.15 16 14 C 0.22 11.46 4.38 85.56 0.37 11.83 16 15 C -0.52 -27.62 8.52 25.60 0.22 -27.40 16 16 H 0.07 3.80 7.81 -2.91 -0.02 3.78 16 17 C 0.01 0.64 5.46 84.65 0.46 1.11 16 18 N -0.93 -53.88 13.29 21.45 0.28 -53.60 16 19 Si 0.97 41.75 29.54 68.60 2.03 43.78 16 20 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 21 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 22 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 23 C 0.08 3.05 4.19 86.30 0.36 3.41 16 24 C -0.09 -3.12 4.72 30.59 0.14 -2.97 16 25 C -0.09 -2.50 2.92 -10.80 -0.03 -2.53 16 26 C -0.14 -3.91 8.95 71.98 0.64 -3.26 16 27 C -0.14 -3.10 9.19 71.98 0.66 -2.44 16 28 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.11 2.27 8.14 -2.38 -0.02 2.25 16 30 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.10 3.19 6.75 -2.39 -0.02 3.18 16 32 H 0.09 3.52 6.54 -2.39 -0.02 3.50 16 33 H 0.34 -1.51 8.06 -2.92 -0.02 -1.53 16 34 H 0.01 0.33 6.50 -2.38 -0.02 0.32 16 35 H -0.02 -1.27 8.00 -2.39 -0.02 -1.29 16 36 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 37 H 0.04 1.93 5.96 -2.38 -0.01 1.91 16 38 H 0.08 3.56 7.31 -2.39 -0.02 3.54 16 39 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.04 1.58 7.60 -2.39 -0.02 1.56 16 41 H 0.07 2.00 8.14 -2.39 -0.02 1.99 16 42 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.04 1.30 6.68 -2.39 -0.02 1.29 16 45 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 46 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -74.39 389.14 3.73 -70.66 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 0.98 Total: 14.16 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: 9.68 Total: 19.30 kcal Atomic # 7 Polarization: -140.71 SS G_CDS: -9.79 Total: -150.49 kcal Atomic # 8 Polarization: 1.75 SS G_CDS: 0.84 Total: 2.59 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -74.39 3.73 -70.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908893519.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.151 kcal (2) G-P(sol) polarization free energy of solvation -74.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds