Wall clock time and date at job start Tue Mar 31 2020 17:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47169 * 2 1 4 4 C 1.50697 * 109.47291 * 240.00237 * 2 1 3 5 5 O 1.21288 * 120.00057 * 332.27614 * 4 2 1 6 6 N 1.34777 * 120.00193 * 152.27662 * 4 2 1 7 7 C 1.47078 * 120.88014 * 5.19323 * 6 4 2 8 8 C 1.53704 * 108.27887 * 128.75411 * 7 6 4 9 9 N 1.46895 * 109.25709 * 54.07791 * 8 7 6 10 10 C 1.46893 * 111.00198 * 172.61155 * 9 8 7 11 11 C 1.53943 * 113.74166 * 43.04078 * 10 9 8 12 12 N 1.47813 * 86.03711 * 222.08770 * 11 10 9 13 13 C 1.36947 * 134.45598 * 204.64450 * 12 11 10 14 14 H 1.07991 * 119.99653 * 179.87053 * 13 12 11 15 15 C 1.38806 * 119.99709 * 359.86483 * 13 12 11 16 16 N 1.31619 * 120.00719 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99842 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47165 * 60.00065 * 17 15 13 19 19 H 1.48504 * 109.47490 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47169 * 300.00383 * 17 15 13 21 21 C 1.47573 * 91.05305 * 24.54997 * 12 11 10 22 22 C 1.46900 * 111.27159 * 296.76127 * 9 8 7 23 23 C 1.47078 * 120.88182 * 185.46353 * 6 4 2 24 24 N 1.46499 * 109.47293 * 120.00023 * 2 1 3 25 25 C 1.34427 * 126.82129 * 34.99586 * 24 2 1 26 26 N 1.30833 * 108.07575 * 179.97438 * 25 24 2 27 27 C 1.33238 * 109.83142 * 0.02562 * 26 25 24 28 28 N 1.30712 * 108.94538 * 0.26644 * 27 26 25 29 29 H 1.08994 * 109.47029 * 175.13588 * 1 2 3 30 30 H 1.08998 * 109.47064 * 295.13603 * 1 2 3 31 31 H 1.08996 * 109.47127 * 55.13495 * 1 2 3 32 32 H 1.08998 * 109.62721 * 248.51857 * 7 6 4 33 33 H 1.08994 * 109.62981 * 9.09970 * 7 6 4 34 34 H 1.09001 * 109.64090 * 294.07821 * 8 7 6 35 35 H 1.08991 * 109.42183 * 173.94888 * 8 7 6 36 36 H 1.09002 * 112.95012 * 174.63461 * 10 9 8 37 37 H 1.09000 * 113.77108 * 336.35196 * 11 10 9 38 38 H 1.09006 * 113.77007 * 107.75204 * 11 10 9 39 39 H 0.96993 * 120.00394 * 179.97438 * 16 15 13 40 40 H 1.08998 * 113.77119 * 221.14897 * 21 12 11 41 41 H 1.08996 * 113.87204 * 89.76526 * 21 12 11 42 42 H 1.09009 * 109.48941 * 303.14454 * 22 9 8 43 43 H 1.09004 * 109.49617 * 183.06762 * 22 9 8 44 44 H 1.09004 * 109.63161 * 350.90270 * 23 6 4 45 45 H 1.09002 * 109.62863 * 111.47784 * 23 6 4 46 46 H 1.07999 * 125.96381 * 0.02694 * 25 24 2 47 47 H 1.07997 * 125.52600 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 1.3579 -1.5744 -1.7498 6 7 3.2311 -0.3856 -1.7539 7 6 4.1143 0.5768 -1.0778 8 6 5.5064 -0.0603 -0.9409 9 7 5.9683 -0.5039 -2.2629 10 6 7.3638 -0.9589 -2.2076 11 6 7.6825 -1.8333 -0.9813 12 7 8.9409 -1.0635 -0.8877 13 6 10.1784 -1.3095 -0.3552 14 1 10.9531 -0.5601 -0.4209 15 6 10.4367 -2.5221 0.2691 16 7 9.4926 -3.4356 0.3488 17 14 12.1249 -2.8580 0.9948 18 1 12.4251 -1.8457 2.0390 19 1 12.1429 -4.2141 1.5996 20 1 13.1490 -2.7812 -0.0779 21 6 8.3293 0.0750 -1.6001 22 6 5.0945 -1.5509 -2.8091 23 6 3.6882 -0.9796 -3.0193 24 7 2.0183 -0.6906 1.1961 25 6 1.4558 -1.7518 1.7999 26 7 2.1938 -2.0699 2.8322 27 6 3.2310 -1.2382 2.9199 28 7 3.1639 -0.3718 1.9435 29 1 -0.3633 -1.0239 -0.0871 30 1 -0.3633 0.4365 0.9303 31 1 -0.3633 0.5874 -0.8432 32 1 4.1826 1.4895 -1.6697 33 1 3.7167 0.8069 -0.0894 34 1 5.4531 -0.9162 -0.2681 35 1 6.2036 0.6752 -0.5399 36 1 7.7106 -1.3822 -3.1504 37 1 7.0068 -1.6745 -0.1409 38 1 7.8275 -2.8872 -1.2189 39 1 9.6732 -4.2831 0.7847 40 1 8.9896 0.5420 -2.3308 41 1 7.8436 0.7968 -0.9435 42 1 5.0470 -2.3861 -2.1102 43 1 5.4931 -1.8965 -3.7629 44 1 3.0087 -1.7789 -3.3152 45 1 3.7163 -0.2136 -3.7943 46 1 0.5527 -2.2546 1.4868 47 1 3.9996 -1.2713 3.6779 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941383966.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:03 Heat of formation + Delta-G solvation = 150.538008 kcal Electronic energy + Delta-G solvation = -30191.210455 eV Core-core repulsion = 26221.295952 eV Total energy + Delta-G solvation = -3969.914503 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.32946 -40.48274 -39.05079 -36.78066 -35.28874 -33.82708 -31.91740 -31.50665 -31.15297 -30.17229 -28.22957 -26.59397 -25.25741 -24.86380 -23.76812 -22.96304 -22.27852 -21.96523 -20.94573 -19.50353 -18.68037 -17.64622 -17.37526 -16.81578 -16.43747 -15.57283 -15.49282 -15.25349 -15.12052 -14.87335 -14.78937 -14.39465 -14.14282 -14.07534 -13.75120 -13.31269 -13.02239 -12.86444 -12.49922 -12.40877 -12.27322 -12.17846 -11.87088 -11.68518 -11.60361 -11.22809 -11.02300 -10.85436 -10.77457 -10.68486 -10.58350 -10.18404 -10.14734 -9.91650 -9.90486 -9.60711 -9.50956 -8.91063 -8.77458 -7.87076 -6.86942 -5.77166 -3.10415 1.35823 1.62498 2.58835 2.70571 2.87571 3.38870 3.42752 3.44493 3.94705 3.97185 4.09823 4.19598 4.41580 4.48428 4.70114 4.87432 4.97800 4.99113 5.07214 5.09845 5.18571 5.24519 5.31603 5.35309 5.45270 5.49281 5.54051 5.62214 5.65229 5.82103 5.94271 6.04855 6.07991 6.12175 6.25668 6.30400 6.32861 6.53212 6.54860 6.60833 6.94972 7.12656 7.19141 7.34034 7.50436 7.58985 7.74493 7.93491 7.96557 9.02834 9.69817 10.58052 11.39288 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.013926 B = 0.003466 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.162315 B = 8076.496051 C = 9361.151354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.140 3.860 3 H 0.123 0.877 4 C 0.506 3.494 5 O -0.531 6.531 6 N -0.597 5.597 7 C 0.105 3.895 8 C 0.043 3.957 9 N -0.530 5.530 10 C 0.035 3.965 11 C 0.134 3.866 12 N -0.608 5.608 13 C -0.224 4.224 14 H 0.080 0.920 15 C -0.006 4.006 16 N -0.921 5.921 17 Si 0.912 3.088 18 H -0.285 1.285 19 H -0.290 1.290 20 H -0.284 1.284 21 C 0.125 3.875 22 C 0.043 3.957 23 C 0.116 3.884 24 N -0.377 5.377 25 C 0.266 3.734 26 N -0.542 5.542 27 C 0.209 3.791 28 N -0.313 5.313 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.048 0.952 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.028 0.972 38 H 0.068 0.932 39 H 0.254 0.746 40 H 0.045 0.955 41 H 0.037 0.963 42 H 0.039 0.961 43 H 0.087 0.913 44 H 0.093 0.907 45 H 0.078 0.922 46 H 0.217 0.783 47 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.829 9.094 -2.844 21.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.034 3.966 3 H 0.141 0.859 4 C 0.290 3.710 5 O -0.407 6.407 6 N -0.329 5.329 7 C -0.018 4.018 8 C -0.086 4.086 9 N -0.254 5.254 10 C -0.074 4.074 11 C 0.008 3.992 12 N -0.334 5.334 13 C -0.352 4.352 14 H 0.098 0.902 15 C -0.203 4.203 16 N -0.568 5.568 17 Si 0.742 3.258 18 H -0.211 1.211 19 H -0.216 1.216 20 H -0.211 1.211 21 C -0.001 4.001 22 C -0.086 4.086 23 C -0.006 4.006 24 N -0.170 5.170 25 C -0.031 4.031 26 N -0.269 5.269 27 C -0.094 4.094 28 N -0.140 5.140 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.112 0.888 34 H 0.066 0.934 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.046 0.954 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.105 0.895 44 H 0.111 0.889 45 H 0.096 0.904 46 H 0.233 0.767 47 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -19.505 9.178 -3.243 21.799 hybrid contribution 0.986 -0.936 0.975 1.673 sum -18.519 8.242 -2.268 20.397 Atomic orbital electron populations 1.22044 0.89829 1.05147 1.04114 1.21453 0.96988 0.98009 0.80183 0.85894 1.20541 0.81601 0.83476 0.85356 1.90715 1.56593 1.31063 1.62350 1.48248 1.16680 1.43817 1.24200 1.22239 0.90134 0.91579 0.97844 1.22564 0.94573 1.00483 0.90980 1.62051 1.02857 1.37013 1.23478 1.24299 0.85182 0.98122 0.99799 1.22895 0.86462 0.97642 0.92248 1.45799 1.07680 1.12951 1.67002 1.18960 0.86384 0.99680 1.30156 0.90233 1.24783 0.97953 0.96552 1.01020 1.69812 1.31946 1.06899 1.48150 0.86208 0.83424 0.77183 0.78985 1.21139 1.21550 1.21050 1.22679 0.92316 0.91651 0.93465 1.22371 0.92087 0.93345 1.00814 1.21831 0.95239 0.98841 0.84680 1.50419 1.19831 1.24873 1.21862 1.26037 0.99263 0.88045 0.89732 1.70625 1.07030 1.28785 1.20464 1.26098 0.96894 0.89418 0.96982 1.78064 1.02665 1.24974 1.08256 0.89954 0.90436 0.89276 0.90434 0.88793 0.93404 0.88796 0.88181 0.95432 0.91376 0.93615 0.93635 0.94553 0.94268 0.89492 0.88911 0.90419 0.76719 0.76423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 8.41 37.16 0.31 -0.62 16 2 C 0.14 1.26 2.80 -69.09 -0.19 1.07 16 3 H 0.12 0.93 6.66 -51.93 -0.35 0.58 16 4 C 0.51 6.01 7.11 -10.99 -0.08 5.93 16 5 O -0.53 -7.58 15.49 5.55 0.09 -7.49 16 6 N -0.60 -7.18 3.00 -172.18 -0.52 -7.69 16 7 C 0.10 1.21 6.31 -3.36 -0.02 1.19 16 8 C 0.04 0.64 4.65 -3.46 -0.02 0.62 16 9 N -0.53 -8.09 4.77 -227.94 -1.09 -9.17 16 10 C 0.03 0.65 4.05 -69.92 -0.28 0.36 16 11 C 0.13 3.18 6.81 -2.84 -0.02 3.16 16 12 N -0.61 -15.63 3.70 -177.88 -0.66 -16.29 16 13 C -0.22 -6.34 10.70 -15.06 -0.16 -6.50 16 14 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 15 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 16 N -0.92 -27.72 11.39 55.49 0.63 -27.09 16 17 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 C 0.13 2.55 8.40 -2.97 -0.02 2.52 16 22 C 0.04 0.60 5.55 -3.70 -0.02 0.58 16 23 C 0.12 1.39 6.61 -3.60 -0.02 1.36 16 24 N -0.38 -4.19 3.52 -57.25 -0.20 -4.39 16 25 C 0.27 2.93 11.79 -90.66 -1.07 1.86 16 26 N -0.54 -7.19 11.19 -15.83 -0.18 -7.37 16 27 C 0.21 2.69 13.03 -91.82 -1.20 1.50 16 28 N -0.31 -4.08 11.46 29.29 0.34 -3.74 16 29 H 0.08 0.54 7.02 -51.93 -0.36 0.18 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.09 1.04 4.60 -51.93 -0.24 0.80 16 34 H 0.05 0.87 6.38 -51.93 -0.33 0.54 16 35 H 0.09 1.47 5.81 -51.93 -0.30 1.17 16 36 H 0.10 1.87 8.11 -51.93 -0.42 1.45 16 37 H 0.03 0.69 5.76 -51.93 -0.30 0.39 16 38 H 0.07 1.83 7.17 -51.93 -0.37 1.46 16 39 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.04 0.71 5.93 -51.93 -0.31 0.41 16 42 H 0.04 0.64 8.14 -51.92 -0.42 0.22 16 43 H 0.09 1.10 8.09 -51.93 -0.42 0.68 16 44 H 0.09 1.14 7.04 -51.93 -0.37 0.77 16 45 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.22 1.60 7.46 -52.49 -0.39 1.21 16 47 H 0.22 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 370.18 15.07 5.58 5.58 Total: -1.00 -34.89 370.18 -10.59 -45.48 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.66 Total: 2.13 kcal Atomic # 6 Polarization: 15.63 SS G_CDS: -2.89 Total: 12.74 kcal Atomic # 7 Polarization: -74.07 SS G_CDS: -1.67 Total: -75.74 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: 0.09 Total: -7.49 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.89 -10.59 -45.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941383966.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.017 kcal (2) G-P(sol) polarization free energy of solvation -34.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds