Wall clock time and date at job start Tue Mar 31 2020 17:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47169 * 2 1 4 4 C 1.50697 * 109.47291 * 240.00237 * 2 1 3 5 5 O 1.21288 * 120.00057 * 332.27614 * 4 2 1 6 6 N 1.34777 * 120.00193 * 152.27662 * 4 2 1 7 7 C 1.47078 * 120.88014 * 5.19323 * 6 4 2 8 8 C 1.53704 * 108.27887 * 128.75411 * 7 6 4 9 9 N 1.46895 * 109.25709 * 54.07791 * 8 7 6 10 10 C 1.46893 * 111.00198 * 172.61155 * 9 8 7 11 11 C 1.53943 * 113.74166 * 43.04078 * 10 9 8 12 12 N 1.47813 * 86.03711 * 222.08770 * 11 10 9 13 13 C 1.36947 * 134.45598 * 204.64450 * 12 11 10 14 14 H 1.07991 * 119.99653 * 179.87053 * 13 12 11 15 15 C 1.38806 * 119.99709 * 359.86483 * 13 12 11 16 16 N 1.31619 * 120.00719 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99842 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47165 * 60.00065 * 17 15 13 19 19 H 1.48504 * 109.47490 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47169 * 300.00383 * 17 15 13 21 21 C 1.47573 * 91.05305 * 24.54997 * 12 11 10 22 22 C 1.46900 * 111.27159 * 296.76127 * 9 8 7 23 23 C 1.47078 * 120.88182 * 185.46353 * 6 4 2 24 24 N 1.46499 * 109.47293 * 120.00023 * 2 1 3 25 25 C 1.34427 * 126.82129 * 34.99586 * 24 2 1 26 26 N 1.30833 * 108.07575 * 179.97438 * 25 24 2 27 27 C 1.33238 * 109.83142 * 0.02562 * 26 25 24 28 28 N 1.30712 * 108.94538 * 0.26644 * 27 26 25 29 29 H 1.08994 * 109.47029 * 175.13588 * 1 2 3 30 30 H 1.08998 * 109.47064 * 295.13603 * 1 2 3 31 31 H 1.08996 * 109.47127 * 55.13495 * 1 2 3 32 32 H 1.08998 * 109.62721 * 248.51857 * 7 6 4 33 33 H 1.08994 * 109.62981 * 9.09970 * 7 6 4 34 34 H 1.09001 * 109.64090 * 294.07821 * 8 7 6 35 35 H 1.08991 * 109.42183 * 173.94888 * 8 7 6 36 36 H 1.09002 * 112.95012 * 174.63461 * 10 9 8 37 37 H 1.09000 * 113.77108 * 336.35196 * 11 10 9 38 38 H 1.09006 * 113.77007 * 107.75204 * 11 10 9 39 39 H 0.96993 * 120.00394 * 179.97438 * 16 15 13 40 40 H 1.08998 * 113.77119 * 221.14897 * 21 12 11 41 41 H 1.08996 * 113.87204 * 89.76526 * 21 12 11 42 42 H 1.09009 * 109.48941 * 303.14454 * 22 9 8 43 43 H 1.09004 * 109.49617 * 183.06762 * 22 9 8 44 44 H 1.09004 * 109.63161 * 350.90270 * 23 6 4 45 45 H 1.09002 * 109.62863 * 111.47784 * 23 6 4 46 46 H 1.07999 * 125.96381 * 0.02694 * 25 24 2 47 47 H 1.07997 * 125.52600 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 1.3579 -1.5744 -1.7498 6 7 3.2311 -0.3856 -1.7539 7 6 4.1143 0.5768 -1.0778 8 6 5.5064 -0.0603 -0.9409 9 7 5.9683 -0.5039 -2.2629 10 6 7.3638 -0.9589 -2.2076 11 6 7.6825 -1.8333 -0.9813 12 7 8.9409 -1.0635 -0.8877 13 6 10.1784 -1.3095 -0.3552 14 1 10.9531 -0.5601 -0.4209 15 6 10.4367 -2.5221 0.2691 16 7 9.4926 -3.4356 0.3488 17 14 12.1249 -2.8580 0.9948 18 1 12.4251 -1.8457 2.0390 19 1 12.1429 -4.2141 1.5996 20 1 13.1490 -2.7812 -0.0779 21 6 8.3293 0.0750 -1.6001 22 6 5.0945 -1.5509 -2.8091 23 6 3.6882 -0.9796 -3.0193 24 7 2.0183 -0.6906 1.1961 25 6 1.4558 -1.7518 1.7999 26 7 2.1938 -2.0699 2.8322 27 6 3.2310 -1.2382 2.9199 28 7 3.1639 -0.3718 1.9435 29 1 -0.3633 -1.0239 -0.0871 30 1 -0.3633 0.4365 0.9303 31 1 -0.3633 0.5874 -0.8432 32 1 4.1826 1.4895 -1.6697 33 1 3.7167 0.8069 -0.0894 34 1 5.4531 -0.9162 -0.2681 35 1 6.2036 0.6752 -0.5399 36 1 7.7106 -1.3822 -3.1504 37 1 7.0068 -1.6745 -0.1409 38 1 7.8275 -2.8872 -1.2189 39 1 9.6732 -4.2831 0.7847 40 1 8.9896 0.5420 -2.3308 41 1 7.8436 0.7968 -0.9435 42 1 5.0470 -2.3861 -2.1102 43 1 5.4931 -1.8965 -3.7629 44 1 3.0087 -1.7789 -3.3152 45 1 3.7163 -0.2136 -3.7943 46 1 0.5527 -2.2546 1.4868 47 1 3.9996 -1.2713 3.6779 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941383966.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:02 Heat of formation + Delta-G solvation = 127.154638 kcal Electronic energy + Delta-G solvation = -30192.224434 eV Core-core repulsion = 26221.295952 eV Total energy + Delta-G solvation = -3970.928482 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.22732 -41.55906 -40.46599 -38.11341 -36.12400 -35.25029 -33.82912 -32.42559 -32.28135 -30.95912 -29.84145 -28.05097 -26.71417 -26.11767 -24.89943 -24.49092 -23.49015 -22.93210 -22.03136 -20.72834 -19.94019 -18.81962 -18.73382 -18.18543 -17.47028 -16.99801 -16.82620 -16.48341 -16.29186 -16.13895 -16.02071 -15.66145 -15.39181 -15.24626 -14.95213 -14.43702 -14.08195 -13.87124 -13.70643 -13.50845 -13.46882 -13.36446 -13.27530 -13.08308 -12.82900 -12.73789 -12.50070 -12.33090 -12.25419 -12.09789 -11.92350 -11.79965 -11.66385 -11.41552 -11.10426 -10.87545 -10.85422 -10.52436 -9.93420 -9.34534 -8.90793 -7.93839 -5.28897 0.45774 0.77020 1.42124 1.45953 1.52178 1.71610 1.79336 1.93169 2.42154 2.76984 3.11688 3.25423 3.29700 3.40973 3.43926 3.73497 3.77890 3.85228 3.92367 3.92874 4.06383 4.14689 4.20755 4.32967 4.36539 4.42533 4.59097 4.62445 4.63821 4.71076 4.72452 4.80756 4.89774 4.94461 5.01016 5.06200 5.17290 5.18924 5.28865 5.31429 5.36334 5.43516 5.72656 5.85684 5.96180 6.04293 6.18162 6.80774 6.85730 7.01553 7.56636 8.51220 9.21992 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.013926 B = 0.003466 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.162315 B = 8076.496051 C = 9361.151354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.141 3.859 3 H 0.142 0.858 4 C 0.503 3.497 5 O -0.556 6.556 6 N -0.603 5.603 7 C 0.117 3.883 8 C 0.047 3.953 9 N -0.511 5.511 10 C 0.064 3.936 11 C 0.136 3.864 12 N -0.638 5.638 13 C -0.235 4.235 14 H 0.088 0.912 15 C -0.068 4.068 16 N -0.957 5.957 17 Si 0.980 3.020 18 H -0.275 1.275 19 H -0.297 1.297 20 H -0.273 1.273 21 C 0.129 3.871 22 C 0.043 3.957 23 C 0.123 3.877 24 N -0.376 5.376 25 C 0.267 3.733 26 N -0.571 5.571 27 C 0.194 3.806 28 N -0.332 5.332 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.100 0.900 34 H 0.009 0.991 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.011 0.989 38 H 0.026 0.974 39 H 0.246 0.754 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.006 0.994 43 H 0.103 0.897 44 H 0.090 0.910 45 H 0.103 0.897 46 H 0.247 0.753 47 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.861 11.345 -3.977 24.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.035 3.965 3 H 0.159 0.841 4 C 0.289 3.711 5 O -0.434 6.434 6 N -0.335 5.335 7 C -0.005 4.005 8 C -0.082 4.082 9 N -0.234 5.234 10 C -0.045 4.045 11 C 0.009 3.991 12 N -0.365 5.365 13 C -0.364 4.364 14 H 0.106 0.894 15 C -0.261 4.261 16 N -0.606 5.606 17 Si 0.808 3.192 18 H -0.201 1.201 19 H -0.223 1.223 20 H -0.199 1.199 21 C 0.005 3.995 22 C -0.085 4.085 23 C 0.001 3.999 24 N -0.169 5.169 25 C -0.029 4.029 26 N -0.299 5.299 27 C -0.108 4.108 28 N -0.159 5.159 29 H 0.096 0.904 30 H 0.112 0.888 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.118 0.882 34 H 0.027 0.973 35 H 0.107 0.893 36 H 0.124 0.876 37 H 0.028 0.972 38 H 0.045 0.955 39 H 0.055 0.945 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.024 0.976 43 H 0.121 0.879 44 H 0.108 0.892 45 H 0.121 0.879 46 H 0.263 0.737 47 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -20.555 11.486 -4.404 23.955 hybrid contribution 1.261 -1.630 1.292 2.432 sum -19.295 9.856 -3.112 21.889 Atomic orbital electron populations 1.22086 0.87349 1.05394 1.05694 1.21714 0.98783 0.98046 0.77958 0.84066 1.21039 0.81223 0.83045 0.85826 1.90704 1.57288 1.32110 1.63250 1.48369 1.16953 1.43894 1.24278 1.22173 0.87598 0.91837 0.98889 1.22508 0.96864 0.98998 0.89810 1.62125 1.01218 1.36626 1.23465 1.23872 0.87315 0.95717 0.97603 1.22756 0.86068 0.96050 0.94225 1.46188 1.07585 1.15429 1.67273 1.19424 0.87803 0.99784 1.29349 0.89443 1.25668 1.01744 0.96551 1.02112 1.70038 1.34029 1.07076 1.49447 0.85128 0.79128 0.76555 0.78398 1.20131 1.22281 1.19856 1.22821 0.92393 0.90977 0.93343 1.22454 0.93500 0.92063 1.00508 1.21792 0.93237 0.99510 0.85383 1.50543 1.19238 1.25014 1.22095 1.26636 0.99633 0.87706 0.88942 1.70607 1.07723 1.29604 1.21927 1.26445 0.97355 0.89541 0.97489 1.77978 1.03731 1.25520 1.08639 0.90411 0.88787 0.87666 0.87598 0.88178 0.97275 0.89286 0.87555 0.97180 0.95532 0.94483 0.91971 0.93002 0.97584 0.87878 0.89177 0.87854 0.73709 0.75318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.41 71.98 0.61 -0.77 16 2 C 0.14 2.21 2.80 44.24 0.12 2.33 16 3 H 0.14 1.70 6.66 -2.38 -0.02 1.68 16 4 C 0.50 11.05 7.11 87.66 0.62 11.67 16 5 O -0.56 -15.06 15.49 -3.05 -0.05 -15.10 16 6 N -0.60 -13.34 3.00 -817.04 -2.45 -15.79 16 7 C 0.12 2.45 6.31 86.51 0.55 3.00 16 8 C 0.05 1.37 4.65 86.54 0.40 1.78 16 9 N -0.51 -15.01 4.77 -875.06 -4.17 -19.18 16 10 C 0.06 2.39 4.05 46.67 0.19 2.58 16 11 C 0.14 6.73 6.81 86.44 0.59 7.32 16 12 N -0.64 -33.28 3.70 -716.68 -2.65 -35.93 16 13 C -0.24 -13.43 10.70 84.03 0.90 -12.53 16 14 H 0.09 4.71 7.83 -2.92 -0.02 4.69 16 15 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 16 N -0.96 -59.91 11.39 21.65 0.25 -59.67 16 17 Si 0.98 46.59 29.55 68.60 2.03 48.61 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 19 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 20 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 21 C 0.13 5.12 8.40 86.49 0.73 5.85 16 22 C 0.04 1.18 5.55 86.38 0.48 1.66 16 23 C 0.12 2.69 6.61 86.35 0.57 3.26 16 24 N -0.38 -7.93 3.52 -335.03 -1.18 -9.10 16 25 C 0.27 5.64 11.79 180.36 2.13 7.76 16 26 N -0.57 -15.20 11.19 -204.01 -2.28 -17.48 16 27 C 0.19 5.12 13.03 180.77 2.36 7.48 16 28 N -0.33 -8.57 11.46 -61.25 -0.70 -9.27 16 29 H 0.08 0.84 7.02 -2.39 -0.02 0.82 16 30 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.10 2.02 4.60 -2.39 -0.01 2.01 16 34 H 0.01 0.34 6.38 -2.39 -0.02 0.32 16 35 H 0.09 2.70 5.81 -2.39 -0.01 2.69 16 36 H 0.11 3.86 8.11 -2.39 -0.02 3.85 16 37 H 0.01 0.55 5.76 -2.39 -0.01 0.54 16 38 H 0.03 1.51 7.17 -2.38 -0.02 1.49 16 39 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 40 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.05 1.94 5.93 -2.39 -0.01 1.92 16 42 H 0.01 0.20 8.14 -2.38 -0.02 0.18 16 43 H 0.10 2.47 8.09 -2.39 -0.02 2.45 16 44 H 0.09 2.08 7.04 -2.39 -0.02 2.06 16 45 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.25 3.25 7.46 -2.91 -0.02 3.23 16 47 H 0.23 5.01 8.06 -2.91 -0.02 4.99 16 Total: -1.00 -78.38 370.18 0.48 -77.90 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.99 Total: 17.17 kcal Atomic # 6 Polarization: 27.16 SS G_CDS: 10.70 Total: 37.86 kcal Atomic # 7 Polarization: -153.24 SS G_CDS: -13.20 Total: -166.44 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -0.05 Total: -15.10 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.61 kcal Total: -78.38 0.48 -77.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941383966.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.052 kcal (2) G-P(sol) polarization free energy of solvation -78.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds