Wall clock time and date at job start Tue Mar 31 2020 18:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46812 * 2 1 4 4 N 1.28517 * 124.44385 * 89.97235 * 3 2 1 5 5 C 1.31136 * 109.06043 * 180.02562 * 4 3 2 6 6 C 1.40923 * 105.77222 * 0.02562 * 5 4 3 7 7 C 1.47802 * 127.23280 * 180.02562 * 6 5 4 8 8 O 1.21551 * 120.00173 * 353.13522 * 7 6 5 9 9 N 1.34783 * 119.99716 * 173.13233 * 7 6 5 10 10 C 1.47076 * 120.88293 * 353.45664 * 9 7 6 11 11 C 1.53238 * 108.51712 * 231.20369 * 10 9 7 12 12 N 1.46901 * 109.34512 * 306.16862 * 11 10 9 13 13 C 1.46892 * 111.00342 * 187.25601 * 12 11 10 14 14 C 1.53946 * 113.74164 * 273.74046 * 13 12 11 15 15 N 1.47812 * 86.03511 * 222.08563 * 14 13 12 16 16 C 1.36941 * 134.45261 * 204.64164 * 15 14 13 17 17 H 1.08003 * 119.99794 * 179.86716 * 16 15 14 18 18 C 1.38816 * 119.99977 * 359.86960 * 16 15 14 19 19 N 1.31614 * 120.00422 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99525 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47731 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46779 * 120.00030 * 20 18 16 23 23 H 1.48500 * 109.47392 * 239.99831 * 20 18 16 24 24 C 1.47568 * 91.05401 * 24.54931 * 15 14 13 25 25 C 1.46901 * 111.26738 * 63.10477 * 12 11 10 26 26 C 1.47081 * 120.87748 * 173.47210 * 9 7 6 27 27 N 1.28587 * 124.44261 * 270.31277 * 3 2 1 28 28 H 1.09001 * 109.46725 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47377 * 299.99737 * 1 2 3 30 30 H 1.09002 * 109.46943 * 60.00458 * 1 2 3 31 31 H 1.08997 * 109.47039 * 239.99864 * 2 1 3 32 32 H 1.08999 * 109.47304 * 119.99896 * 2 1 3 33 33 H 1.08000 * 127.11367 * 179.97438 * 5 4 3 34 34 H 1.08993 * 109.63058 * 111.49707 * 10 9 7 35 35 H 1.08999 * 109.62798 * 350.90948 * 10 9 7 36 36 H 1.09004 * 109.49408 * 186.20754 * 11 10 9 37 37 H 1.09000 * 109.49388 * 66.13141 * 11 10 9 38 38 H 1.08995 * 112.94573 * 45.33107 * 13 12 11 39 39 H 1.09002 * 113.76588 * 336.34833 * 14 13 12 40 40 H 1.09003 * 113.76984 * 107.74545 * 14 13 12 41 41 H 0.96996 * 120.00191 * 180.02562 * 19 18 16 42 42 H 1.08997 * 113.77161 * 221.15466 * 24 15 14 43 43 H 1.09000 * 113.87634 * 89.76346 * 24 15 14 44 44 H 1.08998 * 109.49014 * 56.85618 * 25 12 11 45 45 H 1.08995 * 109.49166 * 176.93935 * 25 12 11 46 46 H 1.08997 * 109.63199 * 248.50432 * 26 9 7 47 47 H 1.08998 * 109.63006 * 9.08897 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2601 2.0667 1.0599 5 6 2.6811 3.2590 0.7120 6 6 2.6840 3.2681 -0.6972 7 6 3.0783 4.3832 -1.5835 8 8 3.3309 5.4745 -1.1116 9 7 3.1577 4.1900 -2.9150 10 6 2.9967 2.8477 -3.4940 11 6 4.1809 2.5751 -4.4276 12 7 4.2896 3.6648 -5.4066 13 6 5.3027 3.3583 -6.4252 14 6 6.7315 3.7637 -6.0200 15 7 6.8766 4.2515 -7.4077 16 6 7.9399 4.4562 -8.2460 17 1 7.7751 4.8302 -9.2458 18 6 9.2295 4.1831 -7.8109 19 7 9.4304 3.7279 -6.5924 20 14 10.6797 4.4618 -8.9548 21 1 10.1899 4.9748 -10.2594 22 1 11.6043 5.4536 -8.3491 23 1 11.3981 3.1792 -9.1649 24 6 5.4163 4.4268 -7.5277 25 6 4.5762 4.9463 -4.7480 26 6 3.4081 5.3161 -3.8275 27 7 2.2552 2.0689 -1.0604 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.9659 4.0670 1.3695 34 1 2.0663 2.8022 -4.0600 35 1 2.9804 2.1046 -2.6967 36 1 4.0227 1.6314 -4.9498 37 1 5.0992 2.5182 -3.8431 38 1 5.2270 2.3402 -6.8070 39 1 6.7679 4.5542 -5.2704 40 1 7.3767 2.9184 -5.7804 41 1 10.3315 3.5374 -6.2883 42 1 5.0133 4.1101 -8.4896 43 1 5.0637 5.4121 -7.2225 44 1 5.4889 4.8564 -4.1591 45 1 4.7045 5.7223 -5.5025 46 1 2.5172 5.5078 -4.4256 47 1 3.6637 6.2049 -3.2508 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941401164.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:31 Heat of formation + Delta-G solvation = 168.894326 kcal Electronic energy + Delta-G solvation = -29256.408153 eV Core-core repulsion = 25287.289639 eV Total energy + Delta-G solvation = -3969.118513 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.94842 -40.15217 -38.78057 -36.61150 -35.25961 -33.90430 -32.89568 -31.82207 -31.24576 -30.52806 -28.14426 -26.44370 -25.29798 -24.82845 -24.29630 -23.31539 -22.60769 -21.82916 -21.19023 -19.66925 -18.37812 -17.72904 -17.18737 -17.00657 -16.74832 -16.02521 -15.43940 -15.34955 -15.12367 -14.93633 -14.72419 -14.63646 -14.16047 -13.96040 -13.71689 -13.37459 -12.97432 -12.74275 -12.68574 -12.25355 -12.15458 -11.95679 -11.94019 -11.72151 -11.58677 -11.39134 -10.94594 -10.90992 -10.80918 -10.68043 -10.64886 -10.43335 -10.20556 -10.08319 -9.84333 -9.72261 -9.48417 -8.80460 -8.68565 -7.79431 -6.84531 -5.76229 -3.08773 1.05738 1.71097 1.79653 2.85134 3.11560 3.38733 3.43965 3.46707 3.61337 4.16203 4.26506 4.29081 4.50300 4.53594 4.58457 4.75371 4.96982 5.05345 5.12573 5.14267 5.23735 5.35708 5.38547 5.38981 5.45313 5.48962 5.51645 5.56888 5.72392 5.73795 5.87119 5.92497 5.99285 6.11022 6.23168 6.32705 6.38469 6.49776 6.58820 6.65355 7.03060 7.21924 7.29089 7.41180 7.54363 7.64251 7.81921 7.98330 8.04051 9.04590 9.71255 10.60221 11.40545 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.019970 B = 0.002444 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.800767 B =11451.944010 C =11656.782402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.131 3.869 3 N -0.143 5.143 4 N -0.289 5.289 5 C 0.034 3.966 6 C -0.039 4.039 7 C 0.606 3.394 8 O -0.532 6.532 9 N -0.595 5.595 10 C 0.098 3.902 11 C 0.042 3.958 12 N -0.529 5.529 13 C 0.035 3.965 14 C 0.132 3.868 15 N -0.610 5.610 16 C -0.220 4.220 17 H 0.081 0.919 18 C -0.009 4.009 19 N -0.921 5.921 20 Si 0.912 3.088 21 H -0.279 1.279 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.126 3.874 25 C 0.037 3.963 26 C 0.118 3.882 27 N -0.247 5.247 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.208 0.792 34 H 0.074 0.926 35 H 0.116 0.884 36 H 0.084 0.916 37 H 0.038 0.962 38 H 0.099 0.901 39 H 0.031 0.969 40 H 0.068 0.932 41 H 0.252 0.748 42 H 0.045 0.955 43 H 0.037 0.963 44 H 0.049 0.951 45 H 0.093 0.907 46 H 0.076 0.924 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.859 -7.956 13.876 25.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.012 3.988 3 N -0.046 5.046 4 N -0.129 5.129 5 C -0.149 4.149 6 C -0.201 4.201 7 C 0.391 3.609 8 O -0.407 6.407 9 N -0.327 5.327 10 C -0.025 4.025 11 C -0.087 4.087 12 N -0.254 5.254 13 C -0.074 4.074 14 C 0.005 3.995 15 N -0.337 5.337 16 C -0.348 4.348 17 H 0.099 0.901 18 C -0.206 4.206 19 N -0.569 5.569 20 Si 0.742 3.258 21 H -0.204 1.204 22 H -0.218 1.218 23 H -0.217 1.217 24 C 0.000 4.000 25 C -0.091 4.091 26 C -0.004 4.004 27 N -0.095 5.095 28 H 0.106 0.894 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.224 0.776 34 H 0.093 0.907 35 H 0.133 0.867 36 H 0.103 0.897 37 H 0.056 0.944 38 H 0.117 0.883 39 H 0.049 0.951 40 H 0.086 0.914 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.055 0.945 44 H 0.067 0.933 45 H 0.112 0.888 46 H 0.094 0.906 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -20.298 -8.612 13.789 26.006 hybrid contribution 2.036 0.906 -0.202 2.238 sum -18.262 -7.706 13.587 24.031 Atomic orbital electron populations 1.22192 0.92831 1.04114 1.03824 1.22132 0.96258 0.74129 1.06288 1.48437 1.43389 1.13454 0.99348 1.74002 1.17672 1.05522 1.15675 1.24829 1.01277 0.95195 0.93619 1.23101 1.08736 0.93502 0.94807 1.16731 0.77445 0.85492 0.81201 1.90802 1.50464 1.24649 1.74781 1.47991 1.69509 1.10207 1.04995 1.22478 0.98645 0.83513 0.97882 1.22412 0.97113 0.95417 0.93726 1.62047 1.48053 1.01790 1.13477 1.24280 0.90515 0.99719 0.92894 1.22944 0.91330 0.97444 0.87738 1.45835 1.00408 1.76372 1.11036 1.19060 0.84253 1.37468 0.93986 0.90135 1.24794 0.97200 1.01844 0.96746 1.69833 1.20199 1.50330 1.16523 0.86049 0.82670 0.77392 0.79679 1.20418 1.21773 1.21731 1.22648 0.85995 0.95436 0.95915 1.22589 0.96218 0.93217 0.97102 1.21878 0.98784 0.88941 0.90786 1.74329 1.15720 1.04530 1.14940 0.89370 0.91368 0.91210 0.86912 0.87045 0.77577 0.90744 0.86666 0.89722 0.94368 0.88346 0.95114 0.91391 0.93769 0.93691 0.94520 0.93334 0.88845 0.90552 0.88678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.66 10.24 37.16 0.38 -0.28 16 2 C 0.13 0.63 7.24 -4.04 -0.03 0.60 16 3 N -0.14 -1.34 3.94 -10.61 -0.04 -1.38 16 4 N -0.29 -3.05 12.01 30.90 0.37 -2.68 16 5 C 0.03 0.38 12.05 -16.83 -0.20 0.17 16 6 C -0.04 -0.49 6.87 -82.68 -0.57 -1.06 16 7 C 0.61 8.71 7.70 -12.35 -0.10 8.62 16 8 O -0.53 -8.90 16.41 5.32 0.09 -8.82 16 9 N -0.59 -8.04 3.01 -173.60 -0.52 -8.56 16 10 C 0.10 1.17 6.25 -3.60 -0.02 1.15 16 11 C 0.04 0.58 5.61 -3.70 -0.02 0.56 16 12 N -0.53 -8.20 4.76 -228.24 -1.09 -9.29 16 13 C 0.03 0.65 4.03 -69.92 -0.28 0.37 16 14 C 0.13 3.12 6.81 -2.84 -0.02 3.10 16 15 N -0.61 -15.74 3.70 -177.88 -0.66 -16.40 16 16 C -0.22 -6.23 10.70 -15.06 -0.16 -6.39 16 17 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 18 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 19 N -0.92 -27.73 11.39 55.49 0.63 -27.10 16 20 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 C 0.13 2.59 8.42 -2.97 -0.03 2.57 16 25 C 0.04 0.58 4.47 -3.70 -0.02 0.56 16 26 C 0.12 1.60 6.61 -3.60 -0.02 1.57 16 27 N -0.25 -2.70 8.70 33.42 0.29 -2.41 16 28 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.11 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.11 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.21 1.83 8.06 -52.49 -0.42 1.41 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.12 1.30 4.35 -54.24 -0.24 1.07 16 36 H 0.08 1.03 8.04 -51.93 -0.42 0.61 16 37 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.10 1.82 8.04 -51.93 -0.42 1.40 16 39 H 0.03 0.76 5.65 -51.93 -0.29 0.46 16 40 H 0.07 1.80 7.17 -51.93 -0.37 1.43 16 41 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.04 0.73 6.22 -51.93 -0.32 0.41 16 44 H 0.05 0.87 6.45 -51.93 -0.33 0.53 16 45 H 0.09 1.50 6.06 -51.93 -0.31 1.19 16 46 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 47 H 0.09 1.32 7.04 -51.93 -0.37 0.95 16 LS Contribution 373.80 15.07 5.63 5.63 Total: -1.00 -34.62 373.80 -8.35 -42.97 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -6.85 Total: -0.50 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: -1.18 Total: 11.16 kcal Atomic # 7 Polarization: -66.80 SS G_CDS: -1.02 Total: -67.82 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.09 Total: -8.82 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.62 -8.35 -42.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941401164.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.865 kcal (2) G-P(sol) polarization free energy of solvation -34.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 177.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 168.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds