Wall clock time and date at job start Tue Mar 31 2020 18:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46812 * 2 1 4 4 N 1.28517 * 124.44385 * 89.97235 * 3 2 1 5 5 C 1.31136 * 109.06043 * 180.02562 * 4 3 2 6 6 C 1.40923 * 105.77222 * 0.02562 * 5 4 3 7 7 C 1.47802 * 127.23280 * 180.02562 * 6 5 4 8 8 O 1.21551 * 120.00173 * 353.13522 * 7 6 5 9 9 N 1.34783 * 119.99716 * 173.13233 * 7 6 5 10 10 C 1.47076 * 120.88293 * 353.45664 * 9 7 6 11 11 C 1.53238 * 108.51712 * 231.20369 * 10 9 7 12 12 N 1.46901 * 109.34512 * 306.16862 * 11 10 9 13 13 C 1.46892 * 111.00342 * 187.25601 * 12 11 10 14 14 C 1.53946 * 113.74164 * 273.74046 * 13 12 11 15 15 N 1.47812 * 86.03511 * 222.08563 * 14 13 12 16 16 C 1.36941 * 134.45261 * 204.64164 * 15 14 13 17 17 H 1.08003 * 119.99794 * 179.86716 * 16 15 14 18 18 C 1.38816 * 119.99977 * 359.86960 * 16 15 14 19 19 N 1.31614 * 120.00422 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99525 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47731 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46779 * 120.00030 * 20 18 16 23 23 H 1.48500 * 109.47392 * 239.99831 * 20 18 16 24 24 C 1.47568 * 91.05401 * 24.54931 * 15 14 13 25 25 C 1.46901 * 111.26738 * 63.10477 * 12 11 10 26 26 C 1.47081 * 120.87748 * 173.47210 * 9 7 6 27 27 N 1.28587 * 124.44261 * 270.31277 * 3 2 1 28 28 H 1.09001 * 109.46725 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47377 * 299.99737 * 1 2 3 30 30 H 1.09002 * 109.46943 * 60.00458 * 1 2 3 31 31 H 1.08997 * 109.47039 * 239.99864 * 2 1 3 32 32 H 1.08999 * 109.47304 * 119.99896 * 2 1 3 33 33 H 1.08000 * 127.11367 * 179.97438 * 5 4 3 34 34 H 1.08993 * 109.63058 * 111.49707 * 10 9 7 35 35 H 1.08999 * 109.62798 * 350.90948 * 10 9 7 36 36 H 1.09004 * 109.49408 * 186.20754 * 11 10 9 37 37 H 1.09000 * 109.49388 * 66.13141 * 11 10 9 38 38 H 1.08995 * 112.94573 * 45.33107 * 13 12 11 39 39 H 1.09002 * 113.76588 * 336.34833 * 14 13 12 40 40 H 1.09003 * 113.76984 * 107.74545 * 14 13 12 41 41 H 0.96996 * 120.00191 * 180.02562 * 19 18 16 42 42 H 1.08997 * 113.77161 * 221.15466 * 24 15 14 43 43 H 1.09000 * 113.87634 * 89.76346 * 24 15 14 44 44 H 1.08998 * 109.49014 * 56.85618 * 25 12 11 45 45 H 1.08995 * 109.49166 * 176.93935 * 25 12 11 46 46 H 1.08997 * 109.63199 * 248.50432 * 26 9 7 47 47 H 1.08998 * 109.63006 * 9.08897 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2601 2.0667 1.0599 5 6 2.6811 3.2590 0.7120 6 6 2.6840 3.2681 -0.6972 7 6 3.0783 4.3832 -1.5835 8 8 3.3309 5.4745 -1.1116 9 7 3.1577 4.1900 -2.9150 10 6 2.9967 2.8477 -3.4940 11 6 4.1809 2.5751 -4.4276 12 7 4.2896 3.6648 -5.4066 13 6 5.3027 3.3583 -6.4252 14 6 6.7315 3.7637 -6.0200 15 7 6.8766 4.2515 -7.4077 16 6 7.9399 4.4562 -8.2460 17 1 7.7751 4.8302 -9.2458 18 6 9.2295 4.1831 -7.8109 19 7 9.4304 3.7279 -6.5924 20 14 10.6797 4.4618 -8.9548 21 1 10.1899 4.9748 -10.2594 22 1 11.6043 5.4536 -8.3491 23 1 11.3981 3.1792 -9.1649 24 6 5.4163 4.4268 -7.5277 25 6 4.5762 4.9463 -4.7480 26 6 3.4081 5.3161 -3.8275 27 7 2.2552 2.0689 -1.0604 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.9659 4.0670 1.3695 34 1 2.0663 2.8022 -4.0600 35 1 2.9804 2.1046 -2.6967 36 1 4.0227 1.6314 -4.9498 37 1 5.0992 2.5182 -3.8431 38 1 5.2270 2.3402 -6.8070 39 1 6.7679 4.5542 -5.2704 40 1 7.3767 2.9184 -5.7804 41 1 10.3315 3.5374 -6.2883 42 1 5.0133 4.1101 -8.4896 43 1 5.0637 5.4121 -7.2225 44 1 5.4889 4.8564 -4.1591 45 1 4.7045 5.7223 -5.5025 46 1 2.5172 5.5078 -4.4256 47 1 3.6637 6.2049 -3.2508 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941401164.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:29 Heat of formation + Delta-G solvation = 143.518499 kcal Electronic energy + Delta-G solvation = -29257.508531 eV Core-core repulsion = 25287.289639 eV Total energy + Delta-G solvation = -3970.218892 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.75420 -41.38343 -40.22875 -37.99756 -35.83762 -35.29328 -34.01674 -33.58552 -32.25572 -31.30055 -29.80131 -27.95227 -26.63026 -26.16258 -25.16840 -24.56480 -24.11321 -22.71946 -22.24779 -20.91837 -19.84076 -18.75159 -18.48181 -18.23202 -17.80362 -17.17063 -16.90881 -16.84925 -16.22423 -16.13776 -15.98044 -15.62686 -15.49270 -15.17906 -14.89440 -14.49168 -13.98191 -13.87741 -13.64010 -13.47314 -13.34366 -13.23576 -13.11979 -13.01511 -12.82632 -12.70254 -12.47884 -12.27744 -12.18394 -12.01731 -11.91697 -11.85334 -11.65048 -11.47946 -11.41317 -11.14105 -10.86123 -10.52689 -9.84504 -9.26295 -8.87407 -7.92333 -5.26542 0.15389 0.86357 1.16290 1.43343 1.44633 1.55098 1.83733 2.07690 2.43648 2.74066 2.90806 3.27798 3.48358 3.50345 3.84041 3.88084 3.93739 3.95435 3.99264 4.06477 4.13595 4.26228 4.28473 4.40391 4.46807 4.52495 4.55001 4.61414 4.69210 4.78115 4.78703 4.84730 4.88413 4.93559 4.98383 4.99775 5.10704 5.19873 5.21374 5.32762 5.42214 5.47503 5.66457 5.88978 6.02027 6.12947 6.25959 6.86178 6.88828 7.08338 7.58556 8.53968 9.24032 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.019970 B = 0.002444 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.800767 B =11451.944010 C =11656.782402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.116 3.884 3 N -0.131 5.131 4 N -0.295 5.295 5 C 0.028 3.972 6 C -0.064 4.064 7 C 0.605 3.395 8 O -0.564 6.564 9 N -0.598 5.598 10 C 0.108 3.892 11 C 0.041 3.959 12 N -0.514 5.514 13 C 0.067 3.933 14 C 0.132 3.868 15 N -0.640 5.640 16 C -0.230 4.230 17 H 0.087 0.913 18 C -0.072 4.072 19 N -0.957 5.957 20 Si 0.980 3.020 21 H -0.262 1.262 22 H -0.295 1.295 23 H -0.291 1.291 24 C 0.129 3.871 25 C 0.043 3.957 26 C 0.126 3.874 27 N -0.243 5.243 28 H 0.115 0.885 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.133 0.867 32 H 0.130 0.870 33 H 0.220 0.780 34 H 0.093 0.907 35 H 0.125 0.875 36 H 0.107 0.893 37 H 0.016 0.984 38 H 0.109 0.891 39 H 0.016 0.984 40 H 0.030 0.970 41 H 0.246 0.754 42 H 0.061 0.939 43 H 0.050 0.950 44 H 0.018 0.982 45 H 0.089 0.911 46 H 0.098 0.902 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.952 -9.316 13.343 27.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.001 4.001 3 N -0.036 5.036 4 N -0.135 5.135 5 C -0.154 4.154 6 C -0.224 4.224 7 C 0.391 3.609 8 O -0.442 6.442 9 N -0.330 5.330 10 C -0.015 4.015 11 C -0.087 4.087 12 N -0.238 5.238 13 C -0.043 4.043 14 C 0.005 3.995 15 N -0.367 5.367 16 C -0.358 4.358 17 H 0.105 0.895 18 C -0.264 4.264 19 N -0.606 5.606 20 Si 0.808 3.192 21 H -0.186 1.186 22 H -0.222 1.222 23 H -0.218 1.218 24 C 0.004 3.996 25 C -0.085 4.085 26 C 0.004 3.996 27 N -0.093 5.093 28 H 0.134 0.866 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.151 0.849 32 H 0.148 0.852 33 H 0.236 0.764 34 H 0.111 0.889 35 H 0.142 0.858 36 H 0.125 0.875 37 H 0.034 0.966 38 H 0.127 0.873 39 H 0.034 0.966 40 H 0.048 0.952 41 H 0.055 0.945 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.036 0.964 45 H 0.107 0.893 46 H 0.116 0.884 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -22.444 -9.978 13.242 27.904 hybrid contribution 2.599 1.246 0.018 2.882 sum -19.845 -8.733 13.260 25.414 Atomic orbital electron populations 1.22168 0.91886 1.05566 1.02675 1.22689 0.97009 0.72123 1.08271 1.48999 1.41600 1.14353 0.98649 1.74018 1.17925 1.05440 1.16083 1.25099 1.01070 0.95819 0.93418 1.22846 1.10779 0.93784 0.95040 1.16970 0.76832 0.85620 0.81467 1.90775 1.51982 1.26059 1.75360 1.48104 1.69159 1.10795 1.04940 1.22519 0.98327 0.82889 0.97768 1.22546 0.97025 0.95642 0.93506 1.62102 1.45657 1.02392 1.13627 1.23852 0.88038 0.99617 0.92777 1.22850 0.94061 0.95720 0.86865 1.46237 1.02225 1.76679 1.11603 1.19484 0.85353 1.36283 0.94694 0.89539 1.25672 0.99996 1.02408 0.98349 1.70040 1.20164 1.51972 1.18417 0.84982 0.78976 0.76873 0.78349 1.18608 1.22243 1.21789 1.22796 0.82975 0.96547 0.97302 1.22499 0.95996 0.93157 0.96885 1.21787 0.98542 0.88836 0.90459 1.74219 1.15458 1.04057 1.15549 0.86610 0.92487 0.92297 0.84945 0.85158 0.76370 0.88870 0.85751 0.87453 0.96597 0.87343 0.96605 0.95156 0.94474 0.92072 0.93261 0.96395 0.89324 0.88355 0.89323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.85 10.24 71.98 0.74 -0.11 16 2 C 0.12 0.79 7.24 86.38 0.63 1.42 16 3 N -0.13 -2.19 3.94 -187.49 -0.74 -2.93 16 4 N -0.29 -5.82 12.01 -56.16 -0.67 -6.50 16 5 C 0.03 0.61 12.05 85.45 1.03 1.64 16 6 C -0.06 -1.55 6.87 42.24 0.29 -1.26 16 7 C 0.60 17.29 7.70 86.77 0.67 17.96 16 8 O -0.56 -19.23 16.41 -3.88 -0.06 -19.29 16 9 N -0.60 -15.65 3.01 -821.41 -2.47 -18.13 16 10 C 0.11 2.34 6.25 86.35 0.54 2.88 16 11 C 0.04 1.06 5.61 86.38 0.48 1.55 16 12 N -0.51 -15.25 4.76 -876.01 -4.17 -19.41 16 13 C 0.07 2.43 4.03 46.67 0.19 2.62 16 14 C 0.13 6.42 6.81 86.44 0.59 7.01 16 15 N -0.64 -33.34 3.70 -716.69 -2.65 -35.99 16 16 C -0.23 -13.09 10.70 84.03 0.90 -12.19 16 17 H 0.09 4.68 7.83 -2.91 -0.02 4.66 16 18 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 19 N -0.96 -59.45 11.39 21.65 0.25 -59.20 16 20 Si 0.98 46.60 29.55 68.60 2.03 48.63 16 21 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 22 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 23 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 24 C 0.13 5.12 8.42 86.49 0.73 5.85 16 25 C 0.04 1.35 4.47 86.39 0.39 1.73 16 26 C 0.13 3.30 6.61 86.35 0.57 3.88 16 27 N -0.24 -4.90 8.70 -48.17 -0.42 -5.32 16 28 H 0.12 -0.02 8.14 -2.39 -0.02 -0.04 16 29 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.06 0.45 8.14 -2.39 -0.02 0.44 16 31 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.22 3.84 8.06 -2.91 -0.02 3.82 16 34 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.13 2.55 4.35 -5.38 -0.02 2.53 16 36 H 0.11 2.31 8.04 -2.38 -0.02 2.30 16 37 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.11 3.82 8.04 -2.39 -0.02 3.80 16 39 H 0.02 0.83 5.65 -2.39 -0.01 0.82 16 40 H 0.03 1.68 7.17 -2.39 -0.02 1.66 16 41 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 42 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 43 H 0.05 1.87 6.22 -2.39 -0.01 1.86 16 44 H 0.02 0.67 6.45 -2.39 -0.02 0.65 16 45 H 0.09 2.83 6.06 -2.39 -0.01 2.81 16 46 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 47 H 0.09 2.48 7.04 -2.39 -0.02 2.46 16 Total: -1.00 -76.75 373.80 0.26 -76.48 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 0.97 Total: 12.40 kcal Atomic # 6 Polarization: 21.06 SS G_CDS: 8.20 Total: 29.26 kcal Atomic # 7 Polarization: -136.60 SS G_CDS: -10.88 Total: -147.48 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.06 Total: -19.29 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -76.75 0.26 -76.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941401164.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 220.002 kcal (2) G-P(sol) polarization free energy of solvation -76.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds