Wall clock time and date at job start Tue Mar 31 2020 18:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46499 * 109.47109 * 2 1 4 4 N 1.28715 * 126.03559 * 266.98347 * 3 2 1 5 5 N 1.28510 * 110.63841 * 179.97438 * 4 3 2 6 6 C 1.33318 * 109.44135 * 359.76619 * 5 4 3 7 7 C 1.37010 * 106.37046 * 0.36491 * 6 5 4 8 8 C 1.47234 * 127.19129 * 179.90163 * 7 6 5 9 9 O 1.21615 * 120.00419 * 155.16018 * 8 7 6 10 10 N 1.34778 * 119.99803 * 335.16175 * 8 7 6 11 11 C 1.47076 * 120.87934 * 172.77663 * 10 8 7 12 12 C 1.53241 * 108.52042 * 128.83824 * 11 10 8 13 13 N 1.46904 * 109.34065 * 53.82957 * 12 11 10 14 14 C 1.46901 * 111.00300 * 172.74521 * 13 12 11 15 15 C 1.53947 * 113.74205 * 278.74733 * 14 13 12 16 16 N 1.47817 * 86.03444 * 222.08193 * 15 14 13 17 17 C 1.36930 * 134.45680 * 204.64758 * 16 15 14 18 18 H 1.08002 * 120.00010 * 179.86652 * 17 16 15 19 19 C 1.38813 * 119.99966 * 359.86152 * 17 16 15 20 20 N 1.31613 * 120.00294 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99877 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47194 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46891 * 119.99995 * 21 19 17 24 24 H 1.48497 * 109.46931 * 240.00123 * 21 19 17 25 25 C 1.47585 * 91.04785 * 24.54731 * 16 15 14 26 26 C 1.46895 * 111.26909 * 296.89750 * 13 12 11 27 27 C 1.47081 * 120.88327 * 352.80075 * 10 8 7 28 28 H 1.09000 * 109.46976 * 300.45164 * 1 2 3 29 29 H 1.09001 * 109.46936 * 60.45138 * 1 2 3 30 30 H 1.09003 * 109.46780 * 180.45030 * 1 2 3 31 31 H 1.08998 * 109.47199 * 240.00192 * 2 1 3 32 32 H 1.09002 * 109.46783 * 120.00048 * 2 1 3 33 33 H 1.07998 * 126.81676 * 180.26025 * 6 5 4 34 34 H 1.09002 * 109.63103 * 9.13274 * 11 10 8 35 35 H 1.08994 * 109.63223 * 248.54684 * 11 10 8 36 36 H 1.08996 * 109.49386 * 173.78927 * 12 11 10 37 37 H 1.09005 * 109.49793 * 293.87025 * 12 11 10 38 38 H 1.09007 * 112.93835 * 50.33312 * 14 13 12 39 39 H 1.09000 * 113.76675 * 336.34379 * 15 14 13 40 40 H 1.08999 * 113.76919 * 107.74783 * 15 14 13 41 41 H 0.97001 * 120.00418 * 180.02562 * 20 19 17 42 42 H 1.09005 * 113.76334 * 221.15114 * 25 16 15 43 43 H 1.08998 * 113.86823 * 89.77253 * 25 16 15 44 44 H 1.08996 * 109.49576 * 183.06288 * 26 13 12 45 45 H 1.08999 * 109.49166 * 303.14174 * 26 13 12 46 46 H 1.09007 * 109.62850 * 111.45235 * 27 10 8 47 47 H 1.08996 * 109.62758 * 350.87346 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.3225 2.0769 -1.0394 5 7 2.7180 3.2511 -0.6987 6 6 2.6782 3.3650 0.6290 7 6 2.2316 2.1609 1.1066 8 6 2.0192 1.7853 2.5142 9 8 1.2278 0.9060 2.7963 10 7 2.7018 2.4160 3.4903 11 6 2.3935 2.1699 4.9072 12 6 3.6977 1.8328 5.6377 13 7 4.6818 2.8953 5.3916 14 6 5.8853 2.6984 6.2107 15 6 5.7384 3.2003 7.6587 16 7 7.1060 3.7390 7.5019 17 6 8.1195 4.0499 8.3686 18 1 9.0530 4.4397 7.9904 19 6 7.9470 3.8642 9.7334 20 7 6.8096 3.3888 10.1944 21 14 9.3294 4.2890 10.9159 22 1 10.4945 4.8023 10.1515 23 1 8.8646 5.3303 11.8672 24 1 9.7278 3.0728 11.6690 25 6 6.9413 3.8048 6.0368 26 6 5.0243 2.9847 3.9659 27 6 3.7744 3.3689 3.1669 28 1 -0.3633 0.5208 0.8859 29 1 -0.3633 0.5068 -0.8940 30 1 -0.3633 -1.0277 0.0081 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.9465 4.2332 1.2125 34 1 1.7001 1.3331 4.9911 35 1 1.9486 3.0631 5.3457 36 1 3.5057 1.7556 6.7079 37 1 4.0869 0.8839 5.2683 38 1 6.2903 1.6892 6.1350 39 1 4.9751 3.9685 7.7820 40 1 5.6619 2.4005 8.3952 41 1 6.6889 3.2594 11.1481 42 1 7.8234 3.4867 5.4809 43 1 6.5324 4.7504 5.6809 44 1 5.7943 3.7428 3.8236 45 1 5.3949 2.0198 3.6197 46 1 3.4622 4.3775 3.4381 47 1 3.9939 3.3249 2.1002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941404564.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:12 Heat of formation + Delta-G solvation = 152.400858 kcal Electronic energy + Delta-G solvation = -29265.953783 eV Core-core repulsion = 25296.120060 eV Total energy + Delta-G solvation = -3969.833724 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.68567 -40.33458 -38.71300 -37.01459 -35.77325 -34.15587 -32.40588 -31.81274 -31.16856 -30.81967 -28.27777 -26.59882 -25.26604 -25.03089 -23.98399 -23.63232 -22.62530 -22.29632 -21.02364 -19.59566 -19.07031 -17.83219 -17.42699 -16.91923 -16.80576 -16.34789 -15.49956 -15.37013 -15.12368 -15.05402 -14.81402 -14.46528 -14.27674 -14.18924 -13.87974 -13.46014 -13.13290 -12.81175 -12.67802 -12.50924 -12.28175 -12.06353 -11.90135 -11.65308 -11.57626 -11.40391 -11.39618 -11.18085 -11.05238 -10.81627 -10.66590 -10.54553 -10.40063 -9.98471 -9.83252 -9.71182 -9.42640 -9.02144 -8.82291 -8.11634 -6.90024 -5.79274 -3.11379 0.62167 1.67923 1.97311 2.56624 2.67048 3.37289 3.42567 3.45225 3.80044 3.99687 4.01464 4.30570 4.41629 4.46204 4.54316 4.69520 4.71145 4.82179 4.96673 5.00488 5.09566 5.12472 5.21167 5.26822 5.31984 5.40269 5.48326 5.55274 5.56702 5.60274 5.65846 5.74190 5.81455 5.85241 5.96801 6.03887 6.16752 6.30850 6.56955 6.62648 6.89916 7.05320 7.18507 7.24321 7.50817 7.61641 7.63234 7.95920 8.01940 9.02570 9.68507 10.57466 11.38111 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.030294 B = 0.002283 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.063743 B =12263.216885 C =12851.556292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.111 3.889 3 N -0.254 5.254 4 N -0.060 5.060 5 N -0.272 5.272 6 C -0.006 4.006 7 C -0.065 4.065 8 C 0.594 3.406 9 O -0.536 6.536 10 N -0.591 5.591 11 C 0.120 3.880 12 C 0.043 3.957 13 N -0.524 5.524 14 C 0.025 3.975 15 C 0.180 3.820 16 N -0.612 5.612 17 C -0.220 4.220 18 H 0.080 0.920 19 C -0.008 4.008 20 N -0.921 5.921 21 Si 0.912 3.088 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.129 3.871 26 C 0.041 3.959 27 C 0.091 3.909 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.205 0.795 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.034 0.966 38 H 0.061 0.939 39 H 0.037 0.963 40 H 0.069 0.931 41 H 0.253 0.747 42 H 0.038 0.962 43 H 0.042 0.958 44 H 0.093 0.907 45 H 0.034 0.966 46 H 0.088 0.912 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.344 -5.584 -19.124 23.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.009 4.009 3 N -0.051 5.051 4 N -0.041 5.041 5 N -0.135 5.135 6 C -0.166 4.166 7 C -0.199 4.199 8 C 0.379 3.621 9 O -0.413 6.413 10 N -0.324 5.324 11 C -0.002 4.002 12 C -0.086 4.086 13 N -0.250 5.250 14 C -0.083 4.083 15 C 0.055 3.945 16 N -0.339 5.339 17 C -0.348 4.348 18 H 0.098 0.902 19 C -0.205 4.205 20 N -0.568 5.568 21 Si 0.742 3.258 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.217 1.217 25 C 0.002 3.998 26 C -0.088 4.088 27 C -0.032 4.032 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.104 0.896 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.222 0.778 34 H 0.115 0.885 35 H 0.102 0.898 36 H 0.113 0.887 37 H 0.053 0.947 38 H 0.079 0.921 39 H 0.055 0.945 40 H 0.087 0.913 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.112 0.888 45 H 0.052 0.948 46 H 0.106 0.894 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.717 -5.613 -20.050 24.398 hybrid contribution 1.041 -0.479 1.638 2.000 sum -11.676 -6.092 -18.412 22.637 Atomic orbital electron populations 1.22124 0.92296 1.04187 1.03803 1.22277 0.97126 0.75554 1.05973 1.47919 1.40203 1.13585 1.03435 1.78263 1.14576 0.99634 1.11602 1.74936 1.16618 1.09458 1.12499 1.24207 1.02373 0.98115 0.91918 1.21976 1.12677 0.94327 0.90936 1.16706 0.81134 0.81691 0.82565 1.90808 1.36708 1.30630 1.83159 1.47883 1.35007 1.43061 1.06430 1.21893 0.97580 1.03044 0.77643 1.22428 0.92020 0.92732 1.01416 1.62261 1.12888 1.44984 1.04868 1.24345 0.88959 0.97966 0.97040 1.22255 0.86534 0.96054 0.89691 1.45808 1.12044 1.75670 1.00352 1.19034 0.92113 1.36757 0.86911 0.90192 1.24786 0.97382 1.01744 0.96577 1.69819 1.23741 1.50492 1.12738 0.86048 0.80995 0.77625 0.81102 1.20458 1.21701 1.21721 1.22578 0.94208 0.95117 0.87881 1.22426 0.96390 1.01032 0.88964 1.22545 0.86791 0.93260 1.00574 0.90493 0.91718 0.89554 0.87335 0.87189 0.77807 0.88544 0.89834 0.88658 0.94726 0.92136 0.94548 0.91276 0.93674 0.94349 0.94049 0.88838 0.94813 0.89388 0.88514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.09 10.19 37.16 0.38 -0.71 16 2 C 0.11 0.80 6.41 -4.04 -0.03 0.77 16 3 N -0.25 -2.59 3.39 -57.37 -0.19 -2.78 16 4 N -0.06 -0.71 13.14 60.35 0.79 0.08 16 5 N -0.27 -3.26 12.35 30.47 0.38 -2.89 16 6 C -0.01 -0.06 9.69 -17.35 -0.17 -0.23 16 7 C -0.06 -0.67 6.51 -82.33 -0.54 -1.21 16 8 C 0.59 6.60 7.53 -12.61 -0.09 6.51 16 9 O -0.54 -6.93 14.23 5.26 0.07 -6.86 16 10 N -0.59 -6.08 3.01 -173.80 -0.52 -6.61 16 11 C 0.12 1.28 6.62 -3.60 -0.02 1.25 16 12 C 0.04 0.53 5.59 -3.70 -0.02 0.51 16 13 N -0.52 -7.29 4.59 -228.24 -1.05 -8.34 16 14 C 0.03 0.45 3.37 -69.92 -0.24 0.21 16 15 C 0.18 4.08 7.08 -2.84 -0.02 4.06 16 16 N -0.61 -15.39 3.70 -177.87 -0.66 -16.05 16 17 C -0.22 -6.11 10.70 -15.06 -0.16 -6.27 16 18 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 19 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 20 N -0.92 -26.93 11.39 55.49 0.63 -26.30 16 21 Si 0.91 21.90 29.55 -169.99 -5.02 16.87 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 25 C 0.13 2.51 7.41 -2.97 -0.02 2.48 16 26 C 0.04 0.46 5.48 -3.70 -0.02 0.44 16 27 C 0.09 0.81 5.27 -3.60 -0.02 0.79 16 28 H 0.08 0.67 7.29 -51.93 -0.38 0.29 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.11 0.80 7.32 -51.93 -0.38 0.42 16 33 H 0.21 1.38 6.18 -52.49 -0.32 1.05 16 34 H 0.10 1.03 7.04 -51.93 -0.37 0.66 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.10 1.23 7.92 -51.93 -0.41 0.82 16 37 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 1.74 7.16 -51.93 -0.37 1.37 16 41 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.04 0.78 7.94 -51.93 -0.41 0.37 16 44 H 0.09 1.02 6.88 -51.93 -0.36 0.67 16 45 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.09 0.71 8.14 -51.92 -0.42 0.28 16 47 H 0.10 0.74 4.26 -51.93 -0.22 0.52 16 LS Contribution 373.58 15.07 5.63 5.63 Total: -1.00 -33.27 373.58 -8.00 -41.28 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -7.00 Total: -2.33 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: -1.06 Total: 8.28 kcal Atomic # 7 Polarization: -62.25 SS G_CDS: -0.62 Total: -62.88 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: 0.07 Total: -6.86 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.27 -8.00 -41.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941404564.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.677 kcal (2) G-P(sol) polarization free energy of solvation -33.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds