Wall clock time and date at job start Tue Mar 31 2020 18:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46499 * 109.47109 * 2 1 4 4 N 1.28715 * 126.03559 * 266.98347 * 3 2 1 5 5 N 1.28510 * 110.63841 * 179.97438 * 4 3 2 6 6 C 1.33318 * 109.44135 * 359.76619 * 5 4 3 7 7 C 1.37010 * 106.37046 * 0.36491 * 6 5 4 8 8 C 1.47234 * 127.19129 * 179.90163 * 7 6 5 9 9 O 1.21615 * 120.00419 * 155.16018 * 8 7 6 10 10 N 1.34778 * 119.99803 * 335.16175 * 8 7 6 11 11 C 1.47076 * 120.87934 * 172.77663 * 10 8 7 12 12 C 1.53241 * 108.52042 * 128.83824 * 11 10 8 13 13 N 1.46904 * 109.34065 * 53.82957 * 12 11 10 14 14 C 1.46901 * 111.00300 * 172.74521 * 13 12 11 15 15 C 1.53947 * 113.74205 * 278.74733 * 14 13 12 16 16 N 1.47817 * 86.03444 * 222.08193 * 15 14 13 17 17 C 1.36930 * 134.45680 * 204.64758 * 16 15 14 18 18 H 1.08002 * 120.00010 * 179.86652 * 17 16 15 19 19 C 1.38813 * 119.99966 * 359.86152 * 17 16 15 20 20 N 1.31613 * 120.00294 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99877 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47194 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46891 * 119.99995 * 21 19 17 24 24 H 1.48497 * 109.46931 * 240.00123 * 21 19 17 25 25 C 1.47585 * 91.04785 * 24.54731 * 16 15 14 26 26 C 1.46895 * 111.26909 * 296.89750 * 13 12 11 27 27 C 1.47081 * 120.88327 * 352.80075 * 10 8 7 28 28 H 1.09000 * 109.46976 * 300.45164 * 1 2 3 29 29 H 1.09001 * 109.46936 * 60.45138 * 1 2 3 30 30 H 1.09003 * 109.46780 * 180.45030 * 1 2 3 31 31 H 1.08998 * 109.47199 * 240.00192 * 2 1 3 32 32 H 1.09002 * 109.46783 * 120.00048 * 2 1 3 33 33 H 1.07998 * 126.81676 * 180.26025 * 6 5 4 34 34 H 1.09002 * 109.63103 * 9.13274 * 11 10 8 35 35 H 1.08994 * 109.63223 * 248.54684 * 11 10 8 36 36 H 1.08996 * 109.49386 * 173.78927 * 12 11 10 37 37 H 1.09005 * 109.49793 * 293.87025 * 12 11 10 38 38 H 1.09007 * 112.93835 * 50.33312 * 14 13 12 39 39 H 1.09000 * 113.76675 * 336.34379 * 15 14 13 40 40 H 1.08999 * 113.76919 * 107.74783 * 15 14 13 41 41 H 0.97001 * 120.00418 * 180.02562 * 20 19 17 42 42 H 1.09005 * 113.76334 * 221.15114 * 25 16 15 43 43 H 1.08998 * 113.86823 * 89.77253 * 25 16 15 44 44 H 1.08996 * 109.49576 * 183.06288 * 26 13 12 45 45 H 1.08999 * 109.49166 * 303.14174 * 26 13 12 46 46 H 1.09007 * 109.62850 * 111.45235 * 27 10 8 47 47 H 1.08996 * 109.62758 * 350.87346 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.3225 2.0769 -1.0394 5 7 2.7180 3.2511 -0.6987 6 6 2.6782 3.3650 0.6290 7 6 2.2316 2.1609 1.1066 8 6 2.0192 1.7853 2.5142 9 8 1.2278 0.9060 2.7963 10 7 2.7018 2.4160 3.4903 11 6 2.3935 2.1699 4.9072 12 6 3.6977 1.8328 5.6377 13 7 4.6818 2.8953 5.3916 14 6 5.8853 2.6984 6.2107 15 6 5.7384 3.2003 7.6587 16 7 7.1060 3.7390 7.5019 17 6 8.1195 4.0499 8.3686 18 1 9.0530 4.4397 7.9904 19 6 7.9470 3.8642 9.7334 20 7 6.8096 3.3888 10.1944 21 14 9.3294 4.2890 10.9159 22 1 10.4945 4.8023 10.1515 23 1 8.8646 5.3303 11.8672 24 1 9.7278 3.0728 11.6690 25 6 6.9413 3.8048 6.0368 26 6 5.0243 2.9847 3.9659 27 6 3.7744 3.3689 3.1669 28 1 -0.3633 0.5208 0.8859 29 1 -0.3633 0.5068 -0.8940 30 1 -0.3633 -1.0277 0.0081 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.9465 4.2332 1.2125 34 1 1.7001 1.3331 4.9911 35 1 1.9486 3.0631 5.3457 36 1 3.5057 1.7556 6.7079 37 1 4.0869 0.8839 5.2683 38 1 6.2903 1.6892 6.1350 39 1 4.9751 3.9685 7.7820 40 1 5.6619 2.4005 8.3952 41 1 6.6889 3.2594 11.1481 42 1 7.8234 3.4867 5.4809 43 1 6.5324 4.7504 5.6809 44 1 5.7943 3.7428 3.8236 45 1 5.3949 2.0198 3.6197 46 1 3.4622 4.3775 3.4381 47 1 3.9939 3.3249 2.1002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941404564.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:11 Heat of formation + Delta-G solvation = 128.356096 kcal Electronic energy + Delta-G solvation = -29266.996443 eV Core-core repulsion = 25296.120060 eV Total energy + Delta-G solvation = -3970.876383 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.46857 -41.27853 -40.04631 -38.21417 -36.51539 -35.33203 -33.95770 -33.05758 -31.82568 -31.69109 -29.81537 -27.98339 -26.74776 -25.85542 -24.95195 -24.64632 -24.11177 -23.19362 -21.96414 -20.72618 -20.35521 -18.86430 -18.57586 -18.19779 -17.69959 -17.26199 -16.92313 -16.62407 -16.28581 -16.01960 -15.88981 -15.72377 -15.25243 -15.15153 -14.95093 -14.39640 -14.21814 -14.04586 -13.77551 -13.51141 -13.30716 -13.19889 -13.10285 -12.94824 -12.81628 -12.58502 -12.55181 -12.48129 -12.20850 -12.14700 -12.07771 -11.73839 -11.66529 -11.30628 -11.27330 -11.13569 -10.87040 -10.53660 -9.91894 -9.26453 -8.89741 -7.89416 -5.22404 -0.16745 0.96230 1.17198 1.46904 1.47703 1.57906 1.76711 1.84823 2.46551 2.85290 3.07617 3.31812 3.32772 3.50310 3.62509 3.68510 3.81896 3.86252 3.88891 4.03775 4.18221 4.22234 4.24531 4.32220 4.35739 4.39806 4.53922 4.63314 4.70758 4.73258 4.78617 4.82364 4.89612 4.91622 4.93636 4.99895 5.10643 5.11818 5.27854 5.29974 5.34493 5.40290 5.55395 5.93522 6.06283 6.14324 6.22807 6.77634 6.93932 7.22140 7.62339 8.58284 9.27951 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.030294 B = 0.002283 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.063743 B =12263.216885 C =12851.556292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.103 3.897 3 N -0.250 5.250 4 N -0.076 5.076 5 N -0.298 5.298 6 C 0.004 3.996 7 C -0.075 4.075 8 C 0.597 3.403 9 O -0.557 6.557 10 N -0.590 5.590 11 C 0.129 3.871 12 C 0.046 3.954 13 N -0.526 5.526 14 C 0.060 3.940 15 C 0.180 3.820 16 N -0.646 5.646 17 C -0.230 4.230 18 H 0.085 0.915 19 C -0.069 4.069 20 N -0.954 5.954 21 Si 0.978 3.022 22 H -0.264 1.264 23 H -0.293 1.293 24 H -0.293 1.293 25 C 0.134 3.866 26 C 0.040 3.960 27 C 0.096 3.904 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.109 0.891 31 H 0.131 0.869 32 H 0.109 0.891 33 H 0.233 0.767 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.031 0.969 38 H 0.055 0.945 39 H 0.024 0.976 40 H 0.034 0.966 41 H 0.248 0.752 42 H 0.053 0.947 43 H 0.058 0.942 44 H 0.102 0.898 45 H 0.031 0.969 46 H 0.106 0.894 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.128 -5.171 -20.869 24.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.016 4.016 3 N -0.048 5.048 4 N -0.056 5.056 5 N -0.159 5.159 6 C -0.157 4.157 7 C -0.210 4.210 8 C 0.383 3.617 9 O -0.436 6.436 10 N -0.322 5.322 11 C 0.007 3.993 12 C -0.083 4.083 13 N -0.251 5.251 14 C -0.049 4.049 15 C 0.055 3.945 16 N -0.373 5.373 17 C -0.359 4.359 18 H 0.102 0.898 19 C -0.262 4.262 20 N -0.603 5.603 21 Si 0.806 3.194 22 H -0.189 1.189 23 H -0.220 1.220 24 H -0.220 1.220 25 C 0.009 3.991 26 C -0.089 4.089 27 C -0.026 4.026 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.127 0.873 31 H 0.149 0.851 32 H 0.127 0.873 33 H 0.249 0.751 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.050 0.950 38 H 0.073 0.927 39 H 0.042 0.958 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.121 0.879 45 H 0.050 0.950 46 H 0.124 0.876 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.497 -5.192 -21.859 25.709 hybrid contribution 0.929 -0.640 2.116 2.398 sum -11.568 -5.832 -19.742 23.614 Atomic orbital electron populations 1.22076 0.91800 1.05286 1.02519 1.22562 0.97497 0.74505 1.07052 1.48197 1.39303 1.14245 1.03087 1.78225 1.15250 0.99969 1.12169 1.74917 1.17575 1.09799 1.13653 1.24669 1.01107 0.98584 0.91317 1.21984 1.13496 0.94853 0.90672 1.16746 0.80812 0.81285 0.82847 1.90802 1.37683 1.31604 1.83479 1.47908 1.35136 1.43086 1.06050 1.21771 0.96290 1.03477 0.77770 1.22410 0.92487 0.92187 1.01208 1.62149 1.11192 1.45531 1.06275 1.23691 0.89919 0.96955 0.94377 1.22085 0.85533 0.94735 0.92181 1.46221 1.12316 1.75956 1.02789 1.19428 0.93073 1.35619 0.87738 0.89757 1.25628 0.99763 1.02483 0.98321 1.70009 1.25670 1.52101 1.12499 0.85017 0.78688 0.76922 0.78750 1.18856 1.22018 1.21975 1.22710 0.95247 0.96201 0.84916 1.22536 0.97960 1.01348 0.87007 1.22642 0.85221 0.93603 1.01098 0.92770 0.91830 0.87296 0.85071 0.87288 0.75061 0.88515 0.89000 0.89701 0.95042 0.92715 0.95842 0.94756 0.94307 0.92886 0.92483 0.87943 0.95020 0.87596 0.86761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 10.19 71.98 0.73 -1.16 16 2 C 0.10 1.33 6.41 86.38 0.55 1.88 16 3 N -0.25 -4.71 3.39 -335.41 -1.14 -5.85 16 4 N -0.08 -1.68 13.14 37.02 0.49 -1.19 16 5 N -0.30 -6.61 12.35 -57.50 -0.71 -7.32 16 6 C 0.00 0.06 9.69 84.18 0.82 0.88 16 7 C -0.08 -1.42 6.51 40.41 0.26 -1.16 16 8 C 0.60 12.19 7.53 86.61 0.65 12.84 16 9 O -0.56 -13.77 14.23 -4.08 -0.06 -13.82 16 10 N -0.59 -10.76 3.01 -822.05 -2.47 -13.23 16 11 C 0.13 2.53 6.62 86.35 0.57 3.11 16 12 C 0.05 1.09 5.59 86.38 0.48 1.58 16 13 N -0.53 -13.76 4.59 -876.01 -4.02 -17.78 16 14 C 0.06 2.07 3.37 46.67 0.16 2.23 16 15 C 0.18 8.35 7.08 86.44 0.61 8.96 16 16 N -0.65 -32.54 3.70 -716.65 -2.65 -35.20 16 17 C -0.23 -12.78 10.70 84.03 0.90 -11.88 16 18 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 19 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 20 N -0.95 -57.34 11.39 21.65 0.25 -57.09 16 21 Si 0.98 45.43 29.55 68.60 2.03 47.46 16 22 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 23 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 24 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 25 C 0.13 5.02 7.41 86.48 0.64 5.66 16 26 C 0.04 0.78 5.48 86.38 0.47 1.26 16 27 C 0.10 1.40 5.27 86.35 0.46 1.85 16 28 H 0.05 0.91 7.29 -2.39 -0.02 0.90 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.11 1.45 7.32 -2.39 -0.02 1.44 16 33 H 0.23 2.28 6.18 -2.91 -0.02 2.26 16 34 H 0.10 1.95 7.04 -2.39 -0.02 1.93 16 35 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.08 2.21 7.92 -2.39 -0.02 2.19 16 37 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 38 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 39 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.03 1.81 7.16 -2.39 -0.02 1.79 16 41 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 42 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 43 H 0.06 2.00 7.94 -2.39 -0.02 1.98 16 44 H 0.10 1.88 6.88 -2.39 -0.02 1.86 16 45 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 47 H 0.11 1.33 4.26 -2.39 -0.01 1.32 16 Total: -1.00 -72.90 373.58 0.46 -72.43 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: 0.98 Total: 9.01 kcal Atomic # 6 Polarization: 14.81 SS G_CDS: 7.78 Total: 22.59 kcal Atomic # 7 Polarization: -127.40 SS G_CDS: -10.26 Total: -137.67 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -0.06 Total: -13.82 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -72.90 0.46 -72.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941404564.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.790 kcal (2) G-P(sol) polarization free energy of solvation -72.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds