Wall clock time and date at job start Tue Mar 31 2020 19:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86806 * 119.99660 * 2 1 4 4 H 1.48504 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.46947 * 299.99785 * 3 2 1 6 6 H 1.48497 * 109.47479 * 60.00202 * 3 2 1 7 7 C 1.38816 * 120.00396 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99923 * 186.59480 * 7 2 1 9 9 N 1.36931 * 119.99648 * 6.60247 * 7 2 1 10 10 C 1.47157 * 120.98452 * 206.79833 * 9 7 2 11 11 C 1.53294 * 108.37472 * 230.61568 * 10 9 7 12 12 O 1.42972 * 109.27428 * 307.63372 * 11 10 9 13 13 C 1.42978 * 114.15537 * 62.45319 * 12 11 10 14 14 C 1.52985 * 109.55134 * 57.52380 * 13 12 11 15 15 C 1.53197 * 109.34554 * 59.01435 * 14 13 12 16 16 N 1.46935 * 108.77746 * 54.56723 * 15 14 13 17 17 C 1.34775 * 120.63784 * 126.35323 * 16 15 14 18 18 O 1.21280 * 120.00039 * 5.15394 * 17 16 15 19 19 C 1.50701 * 119.99680 * 185.15303 * 17 16 15 20 20 C 1.53007 * 115.54832 * 178.20483 * 19 17 16 21 21 C 1.52997 * 117.49463 * 34.20699 * 20 19 17 22 22 C 1.52998 * 117.49697 * 325.58381 * 20 19 17 23 23 C 1.53000 * 117.49830 * 32.53767 * 19 17 16 24 24 C 1.53004 * 117.50070 * 323.87597 * 19 17 16 25 25 C 1.46923 * 118.71602 * 306.33638 * 16 15 14 26 26 C 1.52990 * 109.53127 * 177.81040 * 13 12 11 27 27 C 1.47151 * 120.99092 * 26.82469 * 9 7 2 28 28 H 0.96991 * 120.00360 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.68080 * 110.89938 * 10 9 7 30 30 H 1.08996 * 109.68791 * 350.33763 * 10 9 7 31 31 H 1.09007 * 109.51239 * 67.58443 * 11 10 9 32 32 H 1.08998 * 109.51457 * 187.67766 * 11 10 9 33 33 H 1.08997 * 109.49449 * 178.96920 * 14 13 12 34 34 H 1.08999 * 109.49453 * 299.05128 * 14 13 12 35 35 H 1.09008 * 109.58672 * 294.78320 * 15 14 13 36 36 H 1.09002 * 109.58944 * 174.35818 * 15 14 13 37 37 H 1.08998 * 115.54674 * 179.91166 * 20 19 17 38 38 H 1.08996 * 117.50217 * 359.97438 * 21 20 19 39 39 H 1.09006 * 117.49695 * 145.02416 * 21 20 19 40 40 H 1.09001 * 117.49452 * 214.97559 * 22 20 19 41 41 H 1.08999 * 117.50167 * 359.97438 * 22 20 19 42 42 H 1.09001 * 117.49827 * 359.97438 * 23 19 17 43 43 H 1.09002 * 117.49775 * 145.01789 * 23 19 17 44 44 H 1.08995 * 117.49609 * 214.97813 * 24 19 17 45 45 H 1.08998 * 117.49644 * 359.97438 * 24 19 17 46 46 H 1.08999 * 109.58680 * 293.87866 * 25 16 15 47 47 H 1.09001 * 109.58202 * 173.45604 * 25 16 15 48 48 H 1.09001 * 109.48942 * 60.94451 * 26 13 12 49 49 H 1.09004 * 109.49447 * 180.98863 * 26 13 12 50 50 H 1.09000 * 109.67589 * 249.22285 * 27 9 7 51 51 H 1.08998 * 109.67536 * 9.76672 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0850 -1.2051 0.1080 9 7 1.3324 -2.3841 -0.1353 10 6 1.8728 -3.6354 0.4196 11 6 1.8512 -4.7014 -0.6818 12 8 0.5385 -4.7727 -1.2439 13 6 0.1078 -3.5665 -1.8791 14 6 1.0995 -3.1851 -2.9798 15 6 1.1851 -4.3228 -4.0022 16 7 -0.1685 -4.6260 -4.4869 17 6 -0.4395 -4.6341 -5.8071 18 8 0.4559 -4.4823 -6.6109 19 6 -1.8552 -4.8318 -6.2844 20 6 -2.0536 -4.7807 -7.8007 21 6 -0.9271 -5.3284 -8.6793 22 6 -1.1684 -3.8198 -8.5969 23 6 -2.9803 -4.2814 -5.4057 24 6 -2.7418 -5.7913 -5.4879 25 6 -1.2206 -4.9206 -3.5045 26 6 -1.2801 -3.7764 -2.4878 27 6 0.0424 -2.4410 -0.8409 28 1 -0.4850 0.8399 -0.0004 29 1 1.2571 -3.9612 1.2580 30 1 2.8972 -3.4757 0.7559 31 1 2.5665 -4.4354 -1.4601 32 1 2.1185 -5.6691 -0.2572 33 1 0.7606 -2.2755 -3.4756 34 1 2.0827 -3.0159 -2.5409 35 1 1.6106 -5.2080 -3.5292 36 1 1.8126 -4.0158 -4.8389 37 1 -3.0773 -4.9252 -8.1460 38 1 -0.0446 -5.7248 -8.1772 39 1 -1.2097 -5.8335 -9.6030 40 1 -1.6096 -3.3324 -9.4663 41 1 -0.4450 -3.2237 -8.0405 42 1 -2.6966 -3.7766 -4.4823 43 1 -3.8620 -3.8832 -5.9079 44 1 -3.4667 -6.3856 -6.0440 45 1 -2.3010 -6.2797 -4.6189 46 1 -0.9901 -5.8541 -2.9911 47 1 -2.1808 -5.0081 -4.0128 48 1 -1.9890 -4.0274 -1.6988 49 1 -1.6004 -2.8619 -2.9870 50 1 -0.7569 -2.6450 -0.1284 51 1 -0.1446 -1.4907 -1.3410 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949391819.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:32 Heat of formation + Delta-G solvation = 54.657073 kcal Electronic energy + Delta-G solvation = -31547.344357 eV Core-core repulsion = 27644.519737 eV Total energy + Delta-G solvation = -3902.824620 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.31319 -39.30039 -37.29617 -36.94550 -35.00552 -34.34161 -32.19472 -31.24478 -30.71292 -28.36350 -26.77341 -25.11921 -23.75694 -23.29403 -22.90891 -22.82764 -22.07703 -21.63897 -20.45609 -19.33086 -18.44235 -16.93989 -16.65461 -16.22003 -15.56572 -15.47889 -15.20428 -14.95393 -14.49083 -14.36758 -14.20112 -14.07201 -13.66164 -13.50440 -13.32098 -13.10730 -12.80191 -12.43322 -12.14060 -11.96279 -11.71391 -11.55244 -11.49560 -11.42050 -11.18571 -11.15157 -10.94878 -10.93921 -10.80161 -10.56931 -10.52210 -10.21057 -10.18977 -10.07999 -9.84152 -9.53968 -9.52808 -9.25574 -8.98655 -8.56388 -8.36066 -6.72039 -5.82753 -3.31836 2.46689 3.09007 3.32071 3.39810 3.41084 3.53158 4.05113 4.21287 4.30217 4.35841 4.43497 4.68153 4.72882 4.94045 5.06592 5.13373 5.18595 5.24410 5.31770 5.34109 5.40308 5.44563 5.52495 5.56098 5.63090 5.65013 5.74891 5.76445 5.78897 5.83477 5.86844 5.90720 5.95864 5.98977 6.16469 6.20437 6.23491 6.30902 6.38991 6.40938 6.54606 6.59080 6.70599 6.78746 6.88805 7.15953 7.58127 7.58674 7.67578 7.97349 8.29306 8.35936 9.12537 9.73384 10.29676 11.22134 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015929 B = 0.003587 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.394896 B = 7803.363381 C = 8372.617094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.001 3.999 3 Si 0.906 3.094 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.247 4.247 8 H 0.068 0.932 9 N -0.595 5.595 10 C 0.110 3.890 11 C 0.046 3.954 12 O -0.383 6.383 13 C 0.095 3.905 14 C -0.144 4.144 15 C 0.118 3.882 16 N -0.598 5.598 17 C 0.548 3.452 18 O -0.540 6.540 19 C -0.119 4.119 20 C -0.116 4.116 21 C -0.168 4.168 22 C -0.167 4.167 23 C -0.172 4.172 24 C -0.173 4.173 25 C 0.047 3.953 26 C -0.117 4.117 27 C 0.153 3.847 28 H 0.254 0.746 29 H 0.024 0.976 30 H 0.059 0.941 31 H 0.045 0.955 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.124 0.876 43 H 0.107 0.893 44 H 0.105 0.895 45 H 0.121 0.879 46 H 0.073 0.927 47 H 0.134 0.866 48 H 0.080 0.920 49 H 0.077 0.923 50 H 0.022 0.978 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.332 -11.765 -11.005 17.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.197 4.197 3 Si 0.736 3.264 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.376 4.376 8 H 0.086 0.914 9 N -0.319 5.319 10 C -0.017 4.017 11 C -0.032 4.032 12 O -0.303 6.303 13 C 0.054 3.946 14 C -0.182 4.182 15 C -0.004 4.004 16 N -0.330 5.330 17 C 0.337 3.663 18 O -0.418 6.418 19 C -0.123 4.123 20 C -0.135 4.135 21 C -0.205 4.205 22 C -0.204 4.204 23 C -0.209 4.209 24 C -0.210 4.210 25 C -0.074 4.074 26 C -0.156 4.156 27 C 0.027 3.973 28 H 0.064 0.936 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.125 0.875 42 H 0.142 0.858 43 H 0.125 0.875 44 H 0.124 0.876 45 H 0.138 0.862 46 H 0.091 0.909 47 H 0.151 0.849 48 H 0.099 0.901 49 H 0.096 0.904 50 H 0.041 0.959 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -6.030 -11.678 -11.388 17.390 hybrid contribution 0.608 1.166 0.292 1.346 sum -5.422 -10.513 -11.096 16.219 Atomic orbital electron populations 1.69896 1.05165 1.25277 1.55097 1.25082 0.95536 0.98223 1.00810 0.86152 0.79162 0.83746 0.77342 1.20297 1.21562 1.21581 1.19271 0.90463 0.83371 1.44498 0.91407 1.44059 1.22242 1.03246 1.62310 1.21584 0.98118 0.87948 0.94012 1.22995 0.84840 0.99126 0.96251 1.87780 1.32543 1.35545 1.74391 1.22195 0.92212 0.87228 0.92937 1.22299 1.02328 0.97583 0.96020 1.21601 0.82756 0.98428 0.97620 1.47994 1.11342 1.68596 1.05055 1.19430 0.88831 0.76214 0.81845 1.90609 1.47484 1.50557 1.53185 1.20935 0.90203 1.07607 0.93506 1.21355 0.96176 1.07529 0.88391 1.23052 1.00314 0.96881 1.00215 1.23014 1.02581 0.93374 1.01405 1.23673 0.99057 0.96245 1.01892 1.23673 1.01956 0.92946 1.02423 1.23391 0.93780 0.99039 0.91179 1.21856 0.96945 0.98653 0.98097 1.21588 0.87038 0.96896 0.91804 0.93574 0.95766 0.92226 0.93637 0.90416 0.91227 0.89390 0.91663 0.89775 0.87428 0.87264 0.89792 0.89672 0.87466 0.85848 0.87508 0.87643 0.86158 0.90873 0.84880 0.90132 0.90414 0.95946 0.87359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.37 10.57 55.49 0.59 -24.78 16 2 C 0.00 0.03 5.19 -17.43 -0.09 -0.06 16 3 Si 0.91 21.31 29.56 -169.99 -5.02 16.29 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.25 -6.53 9.70 -15.06 -0.15 -6.68 16 8 H 0.07 1.77 7.84 -52.48 -0.41 1.36 16 9 N -0.59 -14.39 2.57 -171.85 -0.44 -14.83 16 10 C 0.11 2.24 6.74 -3.53 -0.02 2.22 16 11 C 0.05 0.80 6.60 37.31 0.25 1.05 16 12 O -0.38 -6.96 9.00 -35.23 -0.32 -7.28 16 13 C 0.10 1.73 0.68 -90.50 -0.06 1.67 16 14 C -0.14 -2.59 4.33 -26.64 -0.12 -2.70 16 15 C 0.12 1.88 6.18 -3.70 -0.02 1.86 16 16 N -0.60 -8.68 2.97 -172.76 -0.51 -9.20 16 17 C 0.55 8.12 7.22 -10.99 -0.08 8.04 16 18 O -0.54 -9.33 11.27 5.56 0.06 -9.27 16 19 C -0.12 -1.38 2.46 -155.65 -0.38 -1.76 16 20 C -0.12 -1.28 5.85 -90.62 -0.53 -1.81 16 21 C -0.17 -1.98 9.66 -26.73 -0.26 -2.24 16 22 C -0.17 -2.03 9.66 -26.73 -0.26 -2.29 16 23 C -0.17 -1.62 9.03 -26.69 -0.24 -1.86 16 24 C -0.17 -1.53 9.03 -26.69 -0.24 -1.77 16 25 C 0.05 0.60 3.79 -3.72 -0.01 0.59 16 26 C -0.12 -1.75 4.65 -26.64 -0.12 -1.88 16 27 C 0.15 3.50 4.09 -3.55 -0.01 3.48 16 28 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 31 H 0.05 0.79 6.29 -51.93 -0.33 0.46 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 34 H 0.09 1.73 6.16 -51.93 -0.32 1.41 16 35 H 0.07 1.03 7.82 -51.92 -0.41 0.63 16 36 H 0.08 1.40 7.04 -51.93 -0.37 1.04 16 37 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.11 1.54 6.21 -51.93 -0.32 1.22 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.11 1.59 6.35 -51.93 -0.33 1.26 16 42 H 0.12 1.25 4.60 -51.93 -0.24 1.02 16 43 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.12 1.05 5.47 -51.93 -0.28 0.77 16 46 H 0.07 0.95 7.80 -51.93 -0.41 0.55 16 47 H 0.13 1.36 1.61 -62.45 -0.10 1.26 16 48 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 49 H 0.08 1.16 7.50 -51.93 -0.39 0.77 16 50 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.11 2.79 5.81 -51.93 -0.30 2.49 16 LS Contribution 370.29 15.07 5.58 5.58 Total: -1.00 -29.88 370.29 -10.40 -40.28 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -7.98 Total: 7.34 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -2.36 Total: -4.14 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: -0.37 Total: -48.81 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.25 Total: -16.55 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.88 -10.40 -40.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949391819.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.942 kcal (2) G-P(sol) polarization free energy of solvation -29.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds