Wall clock time and date at job start Tue Mar 31 2020 19:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86806 * 119.99660 * 2 1 4 4 H 1.48504 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.46947 * 299.99785 * 3 2 1 6 6 H 1.48497 * 109.47479 * 60.00202 * 3 2 1 7 7 C 1.38816 * 120.00396 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99923 * 186.59480 * 7 2 1 9 9 N 1.36931 * 119.99648 * 6.60247 * 7 2 1 10 10 C 1.47157 * 120.98452 * 206.79833 * 9 7 2 11 11 C 1.53294 * 108.37472 * 230.61568 * 10 9 7 12 12 O 1.42972 * 109.27428 * 307.63372 * 11 10 9 13 13 C 1.42978 * 114.15537 * 62.45319 * 12 11 10 14 14 C 1.52985 * 109.55134 * 57.52380 * 13 12 11 15 15 C 1.53197 * 109.34554 * 59.01435 * 14 13 12 16 16 N 1.46935 * 108.77746 * 54.56723 * 15 14 13 17 17 C 1.34775 * 120.63784 * 126.35323 * 16 15 14 18 18 O 1.21280 * 120.00039 * 5.15394 * 17 16 15 19 19 C 1.50701 * 119.99680 * 185.15303 * 17 16 15 20 20 C 1.53007 * 115.54832 * 178.20483 * 19 17 16 21 21 C 1.52997 * 117.49463 * 34.20699 * 20 19 17 22 22 C 1.52998 * 117.49697 * 325.58381 * 20 19 17 23 23 C 1.53000 * 117.49830 * 32.53767 * 19 17 16 24 24 C 1.53004 * 117.50070 * 323.87597 * 19 17 16 25 25 C 1.46923 * 118.71602 * 306.33638 * 16 15 14 26 26 C 1.52990 * 109.53127 * 177.81040 * 13 12 11 27 27 C 1.47151 * 120.99092 * 26.82469 * 9 7 2 28 28 H 0.96991 * 120.00360 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.68080 * 110.89938 * 10 9 7 30 30 H 1.08996 * 109.68791 * 350.33763 * 10 9 7 31 31 H 1.09007 * 109.51239 * 67.58443 * 11 10 9 32 32 H 1.08998 * 109.51457 * 187.67766 * 11 10 9 33 33 H 1.08997 * 109.49449 * 178.96920 * 14 13 12 34 34 H 1.08999 * 109.49453 * 299.05128 * 14 13 12 35 35 H 1.09008 * 109.58672 * 294.78320 * 15 14 13 36 36 H 1.09002 * 109.58944 * 174.35818 * 15 14 13 37 37 H 1.08998 * 115.54674 * 179.91166 * 20 19 17 38 38 H 1.08996 * 117.50217 * 359.97438 * 21 20 19 39 39 H 1.09006 * 117.49695 * 145.02416 * 21 20 19 40 40 H 1.09001 * 117.49452 * 214.97559 * 22 20 19 41 41 H 1.08999 * 117.50167 * 359.97438 * 22 20 19 42 42 H 1.09001 * 117.49827 * 359.97438 * 23 19 17 43 43 H 1.09002 * 117.49775 * 145.01789 * 23 19 17 44 44 H 1.08995 * 117.49609 * 214.97813 * 24 19 17 45 45 H 1.08998 * 117.49644 * 359.97438 * 24 19 17 46 46 H 1.08999 * 109.58680 * 293.87866 * 25 16 15 47 47 H 1.09001 * 109.58202 * 173.45604 * 25 16 15 48 48 H 1.09001 * 109.48942 * 60.94451 * 26 13 12 49 49 H 1.09004 * 109.49447 * 180.98863 * 26 13 12 50 50 H 1.09000 * 109.67589 * 249.22285 * 27 9 7 51 51 H 1.08998 * 109.67536 * 9.76672 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0850 -1.2051 0.1080 9 7 1.3324 -2.3841 -0.1353 10 6 1.8728 -3.6354 0.4196 11 6 1.8512 -4.7014 -0.6818 12 8 0.5385 -4.7727 -1.2439 13 6 0.1078 -3.5665 -1.8791 14 6 1.0995 -3.1851 -2.9798 15 6 1.1851 -4.3228 -4.0022 16 7 -0.1685 -4.6260 -4.4869 17 6 -0.4395 -4.6341 -5.8071 18 8 0.4559 -4.4823 -6.6109 19 6 -1.8552 -4.8318 -6.2844 20 6 -2.0536 -4.7807 -7.8007 21 6 -0.9271 -5.3284 -8.6793 22 6 -1.1684 -3.8198 -8.5969 23 6 -2.9803 -4.2814 -5.4057 24 6 -2.7418 -5.7913 -5.4879 25 6 -1.2206 -4.9206 -3.5045 26 6 -1.2801 -3.7764 -2.4878 27 6 0.0424 -2.4410 -0.8409 28 1 -0.4850 0.8399 -0.0004 29 1 1.2571 -3.9612 1.2580 30 1 2.8972 -3.4757 0.7559 31 1 2.5665 -4.4354 -1.4601 32 1 2.1185 -5.6691 -0.2572 33 1 0.7606 -2.2755 -3.4756 34 1 2.0827 -3.0159 -2.5409 35 1 1.6106 -5.2080 -3.5292 36 1 1.8126 -4.0158 -4.8389 37 1 -3.0773 -4.9252 -8.1460 38 1 -0.0446 -5.7248 -8.1772 39 1 -1.2097 -5.8335 -9.6030 40 1 -1.6096 -3.3324 -9.4663 41 1 -0.4450 -3.2237 -8.0405 42 1 -2.6966 -3.7766 -4.4823 43 1 -3.8620 -3.8832 -5.9079 44 1 -3.4667 -6.3856 -6.0440 45 1 -2.3010 -6.2797 -4.6189 46 1 -0.9901 -5.8541 -2.9911 47 1 -2.1808 -5.0081 -4.0128 48 1 -1.9890 -4.0274 -1.6988 49 1 -1.6004 -2.8619 -2.9870 50 1 -0.7569 -2.6450 -0.1284 51 1 -0.1446 -1.4907 -1.3410 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949391819.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:31 Heat of formation + Delta-G solvation = 38.280847 kcal Electronic energy + Delta-G solvation = -31548.054483 eV Core-core repulsion = 27644.519737 eV Total energy + Delta-G solvation = -3903.534746 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.38785 -40.72212 -38.33608 -38.10600 -36.40730 -35.83411 -33.59206 -33.15716 -32.00086 -29.87985 -28.48091 -26.36913 -25.19774 -24.66381 -24.22322 -23.70994 -23.00904 -22.79077 -21.86927 -20.57459 -19.80836 -18.86039 -17.75568 -17.38085 -17.02552 -16.65666 -16.40754 -16.29678 -16.10274 -15.70158 -15.56461 -15.34807 -15.23877 -14.88803 -14.62071 -14.51793 -14.31833 -13.59896 -13.44631 -13.31112 -13.15171 -12.89158 -12.74310 -12.68619 -12.49687 -12.38358 -12.29822 -12.22859 -12.15351 -12.09051 -12.03964 -11.82703 -11.72355 -11.48857 -11.12112 -10.80015 -10.66579 -10.51434 -10.39241 -10.36860 -9.61059 -8.67667 -7.86649 -5.38924 1.42366 1.43610 1.44472 1.53514 1.96612 2.44929 2.65837 2.89374 3.23481 3.25860 3.36369 3.46579 3.54369 3.70297 3.89176 3.92680 3.94516 4.03165 4.10846 4.23110 4.27404 4.32764 4.37038 4.37191 4.42280 4.49251 4.55428 4.65842 4.68964 4.70754 4.79543 4.83142 4.88304 4.89405 4.94821 4.99654 5.05412 5.07332 5.09339 5.13682 5.15712 5.31061 5.33640 5.37575 5.45583 5.54522 5.56153 5.69337 6.31677 6.45247 6.45602 7.09662 7.16269 7.77441 8.29550 9.15162 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015929 B = 0.003587 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.394896 B = 7803.363381 C = 8372.617094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.049 4.049 3 Si 0.966 3.034 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.256 4.256 8 H 0.069 0.931 9 N -0.613 5.613 10 C 0.105 3.895 11 C 0.052 3.948 12 O -0.380 6.380 13 C 0.105 3.895 14 C -0.132 4.132 15 C 0.129 3.871 16 N -0.601 5.601 17 C 0.539 3.461 18 O -0.572 6.572 19 C -0.146 4.146 20 C -0.100 4.100 21 C -0.172 4.172 22 C -0.181 4.181 23 C -0.166 4.166 24 C -0.151 4.151 25 C 0.056 3.944 26 C -0.115 4.115 27 C 0.162 3.838 28 H 0.250 0.750 29 H 0.018 0.982 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.115 0.885 33 H 0.048 0.952 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.140 0.860 38 H 0.080 0.920 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.072 0.928 42 H 0.114 0.886 43 H 0.130 0.870 44 H 0.135 0.865 45 H 0.124 0.876 46 H 0.079 0.921 47 H 0.166 0.834 48 H 0.090 0.910 49 H 0.074 0.926 50 H -0.006 1.006 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.894 -13.780 -11.944 19.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.244 4.244 3 Si 0.794 3.206 4 H -0.192 1.192 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.386 4.386 8 H 0.086 0.914 9 N -0.337 5.337 10 C -0.021 4.021 11 C -0.026 4.026 12 O -0.299 6.299 13 C 0.064 3.936 14 C -0.170 4.170 15 C 0.006 3.994 16 N -0.333 5.333 17 C 0.330 3.670 18 O -0.453 6.453 19 C -0.149 4.149 20 C -0.118 4.118 21 C -0.209 4.209 22 C -0.218 4.218 23 C -0.202 4.202 24 C -0.188 4.188 25 C -0.064 4.064 26 C -0.154 4.154 27 C 0.036 3.964 28 H 0.059 0.941 29 H 0.036 0.964 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.133 0.867 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.158 0.842 38 H 0.098 0.902 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.090 0.910 42 H 0.132 0.868 43 H 0.148 0.852 44 H 0.153 0.847 45 H 0.141 0.859 46 H 0.097 0.903 47 H 0.182 0.818 48 H 0.109 0.891 49 H 0.092 0.908 50 H 0.012 0.988 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.586 -13.727 -12.315 19.941 hybrid contribution 1.158 1.798 0.638 2.232 sum -6.428 -11.929 -11.676 17.887 Atomic orbital electron populations 1.70074 1.06345 1.25501 1.56298 1.25771 0.96295 1.01075 1.01265 0.85215 0.78513 0.80058 0.76766 1.19250 1.21873 1.21769 1.19558 0.90776 0.84567 1.43679 0.91365 1.44310 1.22401 1.03956 1.63076 1.21766 0.98070 0.87291 0.94925 1.23034 0.84567 0.99784 0.95224 1.87790 1.33039 1.34819 1.74242 1.21982 0.94312 0.85756 0.91505 1.22113 1.01014 0.97639 0.96269 1.21343 0.84018 0.97576 0.96457 1.48074 1.10968 1.68632 1.05638 1.20140 0.90255 0.75268 0.81382 1.90602 1.48955 1.51816 1.53932 1.20947 0.88558 1.11058 0.94343 1.21532 0.97140 1.05338 0.87817 1.22986 1.00068 0.96497 1.01337 1.22938 1.03060 0.93432 1.02399 1.23757 0.98486 0.97034 1.00926 1.23813 1.00619 0.92668 1.01664 1.23568 0.94701 0.97802 0.90338 1.21871 0.94797 0.99773 0.98938 1.21360 0.85923 0.97229 0.91900 0.94077 0.96420 0.91531 0.93467 0.86687 0.93314 0.91363 0.90955 0.90962 0.84233 0.90164 0.87586 0.87826 0.90955 0.86790 0.85166 0.84727 0.85868 0.90281 0.81810 0.89147 0.90760 0.98754 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.08 10.57 21.65 0.23 -53.85 16 2 C -0.05 -2.71 5.19 84.86 0.44 -2.27 16 3 Si 0.97 44.76 29.56 68.60 2.03 46.79 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 6 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 7 C -0.26 -13.87 9.70 84.04 0.81 -13.05 16 8 H 0.07 3.61 7.84 -2.91 -0.02 3.59 16 9 N -0.61 -30.40 2.57 -697.60 -1.79 -32.19 16 10 C 0.10 4.27 6.74 86.35 0.58 4.86 16 11 C 0.05 1.72 6.60 72.08 0.48 2.19 16 12 O -0.38 -13.31 9.00 -148.98 -1.34 -14.65 16 13 C 0.11 3.87 0.68 -10.71 -0.01 3.86 16 14 C -0.13 -4.87 4.33 30.66 0.13 -4.74 16 15 C 0.13 4.13 6.18 86.36 0.53 4.67 16 16 N -0.60 -17.00 2.97 -818.88 -2.43 -19.43 16 17 C 0.54 15.67 7.22 87.66 0.63 16.30 16 18 O -0.57 -20.35 11.27 -3.03 -0.03 -20.39 16 19 C -0.15 -3.00 2.46 -52.92 -0.13 -3.13 16 20 C -0.10 -1.94 5.85 -10.79 -0.06 -2.00 16 21 C -0.17 -3.86 9.66 30.59 0.30 -3.56 16 22 C -0.18 -4.29 9.66 30.60 0.30 -3.99 16 23 C -0.17 -2.53 9.03 30.62 0.28 -2.25 16 24 C -0.15 -1.99 9.03 30.62 0.28 -1.72 16 25 C 0.06 1.30 3.79 86.36 0.33 1.63 16 26 C -0.12 -3.37 4.65 30.65 0.14 -3.22 16 27 C 0.16 7.69 4.09 86.34 0.35 8.04 16 28 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 29 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.07 2.57 7.96 -2.39 -0.02 2.55 16 31 H 0.05 1.58 6.29 -2.38 -0.01 1.56 16 32 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 33 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.07 2.77 6.16 -2.39 -0.01 2.76 16 35 H 0.07 2.22 7.82 -2.38 -0.02 2.20 16 36 H 0.07 2.49 7.04 -2.39 -0.02 2.48 16 37 H 0.14 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.08 2.29 6.21 -2.39 -0.01 2.28 16 39 H 0.11 1.85 8.14 -2.38 -0.02 1.83 16 40 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.07 2.23 6.35 -2.39 -0.02 2.22 16 42 H 0.11 2.00 4.60 -2.39 -0.01 1.99 16 43 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.12 1.61 5.47 -2.39 -0.01 1.59 16 46 H 0.08 1.81 7.80 -2.39 -0.02 1.79 16 47 H 0.17 2.83 1.61 -12.27 -0.02 2.81 16 48 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 49 H 0.07 2.22 7.50 -2.38 -0.02 2.20 16 50 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 51 H 0.08 4.13 5.81 -2.39 -0.01 4.11 16 Total: -1.00 -68.49 370.29 2.96 -65.52 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: 0.92 Total: 26.58 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: 5.38 Total: 1.61 kcal Atomic # 7 Polarization: -101.48 SS G_CDS: -3.99 Total: -105.47 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -1.38 Total: -35.04 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -68.49 2.96 -65.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949391819.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.806 kcal (2) G-P(sol) polarization free energy of solvation -68.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds