Wall clock time and date at job start Tue Mar 31 2020 18:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28718 * 125.32027 * 2 1 4 4 N 1.28982 * 108.98723 * 180.02562 * 3 2 1 5 5 C 1.34186 * 107.25265 * 0.02562 * 4 3 2 6 6 C 1.48010 * 126.69767 * 180.02562 * 5 4 3 7 7 O 1.21531 * 119.99836 * 172.43468 * 6 5 4 8 8 N 1.34779 * 119.99561 * 352.43823 * 6 5 4 9 9 C 1.46921 * 120.63717 * 352.97618 * 8 6 5 10 10 C 1.53189 * 108.77725 * 233.63344 * 9 8 6 11 11 C 1.53044 * 109.31365 * 305.36369 * 10 9 8 12 12 C 1.53042 * 109.53435 * 61.36248 * 11 10 9 13 13 H 1.09006 * 109.51992 * 58.60885 * 12 11 10 14 14 C 1.53001 * 109.49313 * 178.68118 * 12 11 10 15 15 H 1.09000 * 110.88402 * 62.27371 * 14 12 11 16 16 C 1.55155 * 111.03496 * 186.17202 * 14 12 11 17 17 C 1.54341 * 103.02181 * 153.39929 * 16 14 12 18 18 N 1.47020 * 107.26013 * 338.14245 * 17 16 14 19 19 C 1.36945 * 125.64441 * 178.84842 * 18 17 16 20 20 H 1.08001 * 119.99493 * 179.68945 * 19 18 17 21 21 C 1.38809 * 119.99788 * 359.41840 * 19 18 17 22 22 N 1.31619 * 120.00455 * 0.27128 * 21 19 18 23 23 Si 1.86806 * 119.99747 * 180.27517 * 21 19 18 24 24 H 1.48501 * 109.47206 * 59.99548 * 23 21 19 25 25 H 1.48494 * 109.47060 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.46851 * 299.99850 * 23 21 19 27 27 C 1.47418 * 108.70884 * 358.58113 * 18 17 16 28 28 C 1.46932 * 120.62290 * 173.00067 * 8 6 5 29 29 N 1.28872 * 125.31882 * 180.31966 * 2 1 3 30 30 H 1.09002 * 109.47439 * 90.02377 * 1 2 3 31 31 H 1.09000 * 109.47069 * 210.02428 * 1 2 3 32 32 H 1.09002 * 109.47406 * 330.02197 * 1 2 3 33 33 H 1.09001 * 109.58172 * 353.42061 * 9 8 6 34 34 H 1.09003 * 109.58673 * 113.70108 * 9 8 6 35 35 H 1.09006 * 109.50005 * 65.31489 * 10 9 8 36 36 H 1.09002 * 109.50142 * 185.37818 * 10 9 8 37 37 H 1.08999 * 109.45736 * 301.34715 * 11 10 9 38 38 H 1.08991 * 109.45952 * 181.38517 * 11 10 9 39 39 H 1.08997 * 110.72170 * 271.95249 * 16 14 12 40 40 H 1.08998 * 110.72376 * 35.05701 * 16 14 12 41 41 H 1.08997 * 109.98947 * 218.66550 * 17 16 14 42 42 H 1.09000 * 109.77622 * 97.49483 * 17 16 14 43 43 H 0.96993 * 120.00277 * 180.02562 * 22 21 19 44 44 H 1.09005 * 110.37072 * 143.19589 * 27 18 17 45 45 H 1.09000 * 110.37065 * 265.41176 * 27 18 17 46 46 H 1.08994 * 109.59154 * 6.58459 * 28 8 6 47 47 H 1.08995 * 109.70357 * 246.22371 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2092 1.0503 0.0000 4 7 3.4469 0.6875 -0.0005 5 6 3.4685 -0.6542 -0.0015 6 6 4.6693 -1.5195 -0.0018 7 8 4.5522 -2.7213 0.1359 8 7 5.8924 -0.9746 -0.1548 9 6 6.0421 0.4515 -0.4749 10 6 6.9175 0.5872 -1.7246 11 6 8.2404 -0.1483 -1.4982 12 6 7.9653 -1.6348 -1.2601 13 1 7.4390 -2.0500 -2.1197 14 6 9.2904 -2.3748 -1.0665 15 1 9.8169 -2.0050 -0.1867 16 6 9.0646 -3.9071 -0.9763 17 6 10.4067 -4.4862 -1.4717 18 7 11.0610 -3.4441 -2.2763 19 6 12.2856 -3.5528 -2.8795 20 1 12.6786 -2.7284 -3.4560 21 6 13.0241 -4.7204 -2.7453 22 7 12.5451 -5.7251 -2.0428 23 14 14.6980 -4.8658 -3.5618 24 1 15.5989 -3.8090 -3.0357 25 1 15.2777 -6.2010 -3.2681 26 1 14.5483 -4.7028 -5.0302 27 6 10.1777 -2.2651 -2.3316 28 6 7.1017 -1.7957 -0.0051 29 7 2.2100 -1.0515 -0.0059 30 1 -0.3634 -0.0004 -1.0277 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3634 0.8902 0.5135 33 1 5.0617 0.8878 -0.6664 34 1 6.5139 0.9663 0.3621 35 1 6.4009 0.1515 -2.5799 36 1 7.1154 1.6416 -1.9176 37 1 8.7449 0.2715 -0.6279 38 1 8.8752 -0.0326 -2.3766 39 1 8.8685 -4.2081 0.0528 40 1 8.2481 -4.2158 -1.6291 41 1 10.2278 -5.3699 -2.0842 42 1 11.0342 -4.7446 -0.6187 43 1 13.0614 -6.5408 -1.9487 44 1 10.7665 -1.3482 -2.3037 45 1 9.5632 -2.2933 -3.2315 46 1 6.8205 -2.8421 0.1132 47 1 7.6631 -1.4670 0.8694 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961222736.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:18 Heat of formation + Delta-G solvation = 133.724766 kcal Electronic energy + Delta-G solvation = -29108.201424 eV Core-core repulsion = 25137.557844 eV Total energy + Delta-G solvation = -3970.643580 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.84356 -40.35363 -38.30689 -36.72230 -35.72893 -33.67795 -33.52993 -32.30979 -31.15337 -29.49736 -28.83295 -27.35411 -26.20305 -24.89789 -24.17802 -23.49042 -22.66482 -21.36745 -19.85370 -19.77979 -19.44864 -18.12005 -18.03671 -17.13105 -16.72471 -16.39682 -15.62206 -14.92465 -14.84037 -14.56465 -14.33732 -14.10815 -14.05019 -13.84090 -13.78607 -13.42678 -13.14804 -13.06580 -12.59125 -12.24876 -12.12395 -11.96294 -11.72417 -11.54464 -11.50752 -11.12773 -10.97404 -10.86220 -10.81332 -10.75014 -10.67060 -10.55958 -10.30169 -10.07167 -9.89855 -9.71737 -9.60445 -9.52692 -8.76000 -8.52197 -6.74069 -5.63402 -2.96605 0.58778 1.05150 1.31276 2.45852 2.81482 3.44831 3.48684 3.50330 3.53775 3.65416 4.27200 4.33487 4.55685 4.58368 4.63727 4.80823 4.90241 4.92890 4.99686 5.11246 5.25467 5.44383 5.51134 5.54411 5.57601 5.63058 5.73202 5.77090 5.82430 5.89368 6.01752 6.02858 6.09681 6.13377 6.31658 6.37298 6.46658 6.52450 6.66147 6.69061 6.83500 7.06118 7.08504 7.63132 7.64299 7.74601 7.86346 7.91723 8.34975 9.30290 9.91088 10.58125 11.48136 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.033065 B = 0.002224 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.620473 B =12587.513167 C =13148.325660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.133 5.133 3 N -0.059 5.059 4 N -0.254 5.254 5 C 0.139 3.861 6 C 0.612 3.388 7 O -0.507 6.507 8 N -0.585 5.585 9 C 0.082 3.918 10 C -0.133 4.133 11 C -0.117 4.117 12 C -0.086 4.086 13 H 0.075 0.925 14 C -0.094 4.094 15 H 0.075 0.925 16 C -0.141 4.141 17 C 0.178 3.822 18 N -0.607 5.607 19 C -0.227 4.227 20 H 0.076 0.924 21 C -0.010 4.010 22 N -0.922 5.922 23 Si 0.911 3.089 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.145 3.855 28 C 0.118 3.882 29 N -0.247 5.247 30 H 0.107 0.893 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.039 0.961 42 H 0.045 0.955 43 H 0.252 0.748 44 H 0.036 0.964 45 H 0.016 0.984 46 H 0.098 0.902 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.869 15.880 5.589 30.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.046 5.046 3 N -0.052 5.052 4 N -0.128 5.128 5 C -0.145 4.145 6 C 0.393 3.607 7 O -0.379 6.379 8 N -0.318 5.318 9 C -0.041 4.041 10 C -0.171 4.171 11 C -0.155 4.155 12 C -0.106 4.106 13 H 0.093 0.907 14 C -0.114 4.114 15 H 0.093 0.907 16 C -0.180 4.180 17 C 0.053 3.947 18 N -0.333 5.333 19 C -0.355 4.355 20 H 0.094 0.906 21 C -0.206 4.206 22 N -0.570 5.570 23 Si 0.742 3.258 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 C 0.019 3.981 28 C -0.003 4.003 29 N -0.101 5.101 30 H 0.125 0.875 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.054 0.946 45 H 0.034 0.966 46 H 0.116 0.884 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -25.150 15.558 5.660 30.110 hybrid contribution 1.028 -0.466 -0.468 1.222 sum -24.122 15.092 5.192 28.924 Atomic orbital electron populations 1.22588 0.68347 1.07339 1.06566 1.50245 1.11180 1.00637 1.42570 1.78949 0.96696 1.14258 1.15273 1.75980 1.09398 1.10158 1.17305 1.25373 0.93176 0.90144 1.05846 1.16185 0.80585 0.85487 0.78459 1.90869 1.84873 1.13015 1.49098 1.47874 1.04625 1.11431 1.67891 1.22539 1.03758 0.79890 0.97874 1.21928 0.96574 1.01124 0.97486 1.21631 0.96593 0.94602 1.02673 1.21479 0.95961 0.95730 0.97443 0.90670 1.22306 0.93770 0.95537 0.99827 0.90665 1.22944 1.00209 0.94606 1.00194 1.21126 0.88011 0.90768 0.94793 1.44493 1.17484 1.11455 1.59912 1.19008 0.92134 0.99467 1.24899 0.90609 1.24807 0.98849 0.96426 1.00560 1.69965 1.37664 1.05074 1.44281 0.86211 0.83856 0.76785 0.78974 1.21233 1.21655 1.21248 1.21512 0.91635 0.91183 0.93775 1.21893 0.83339 0.96659 0.98384 1.75126 1.02410 1.14270 1.18308 0.87510 0.86652 0.86484 0.86290 0.90821 0.91747 0.90515 0.91612 0.90883 0.92314 0.92547 0.94246 0.93690 0.93786 0.94566 0.96642 0.88355 0.90667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.16 11.62 59.85 0.70 0.85 16 2 N -0.13 -1.08 4.39 -16.65 -0.07 -1.15 16 3 N -0.06 -0.57 13.23 60.35 0.80 0.23 16 4 N -0.25 -2.86 9.07 32.10 0.29 -2.57 16 5 C 0.14 1.75 7.80 -156.25 -1.22 0.53 16 6 C 0.61 8.72 7.70 -12.25 -0.09 8.62 16 7 O -0.51 -8.77 16.52 5.34 0.09 -8.68 16 8 N -0.59 -7.33 2.97 -173.82 -0.52 -7.84 16 9 C 0.08 0.84 6.11 -3.71 -0.02 0.82 16 10 C -0.13 -1.31 6.08 -26.61 -0.16 -1.48 16 11 C -0.12 -1.36 4.99 -26.69 -0.13 -1.49 16 12 C -0.09 -1.19 1.85 -90.50 -0.17 -1.35 16 13 H 0.07 1.13 8.11 -51.93 -0.42 0.71 16 14 C -0.09 -1.61 2.57 -88.47 -0.23 -1.83 16 15 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 16 C -0.14 -2.71 5.70 -24.89 -0.14 -2.85 16 17 C 0.18 4.45 5.38 -3.06 -0.02 4.44 16 18 N -0.61 -15.89 3.39 -170.06 -0.58 -16.46 16 19 C -0.23 -6.46 10.28 -15.06 -0.15 -6.62 16 20 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 21 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 22 N -0.92 -27.80 10.31 55.49 0.57 -27.23 16 23 Si 0.91 22.55 29.55 -169.99 -5.02 17.52 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 27 C 0.15 3.00 5.66 -2.53 -0.01 2.99 16 28 C 0.12 1.54 5.49 -3.71 -0.02 1.52 16 29 N -0.25 -2.87 12.17 32.11 0.39 -2.48 16 30 H 0.11 -0.01 8.14 -51.93 -0.42 -0.43 16 31 H 0.11 0.05 8.14 -51.93 -0.42 -0.37 16 32 H 0.12 -0.07 8.14 -51.93 -0.42 -0.50 16 33 H 0.12 1.23 4.17 -65.22 -0.27 0.96 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.90 7.21 -51.93 -0.37 0.52 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.06 1.06 8.01 -51.93 -0.42 0.64 16 41 H 0.04 1.10 7.53 -51.93 -0.39 0.71 16 42 H 0.04 1.24 7.36 -51.93 -0.38 0.86 16 43 H 0.25 7.38 8.31 -40.82 -0.34 7.05 16 44 H 0.04 0.72 8.02 -51.93 -0.42 0.31 16 45 H 0.02 0.33 8.04 -51.93 -0.42 -0.09 16 46 H 0.10 1.44 6.56 -51.93 -0.34 1.10 16 47 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 372.21 15.07 5.61 5.61 Total: -1.00 -35.77 372.21 -7.42 -43.19 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -7.21 Total: -3.88 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -1.77 Total: 3.75 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: 0.89 Total: -57.51 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.09 Total: -8.68 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.77 -7.42 -43.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961222736.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.910 kcal (2) G-P(sol) polarization free energy of solvation -35.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds