Wall clock time and date at job start Tue Mar 31 2020 18:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28718 * 125.32027 * 2 1 4 4 N 1.28982 * 108.98723 * 180.02562 * 3 2 1 5 5 C 1.34186 * 107.25265 * 0.02562 * 4 3 2 6 6 C 1.48010 * 126.69767 * 180.02562 * 5 4 3 7 7 O 1.21531 * 119.99836 * 172.43468 * 6 5 4 8 8 N 1.34779 * 119.99561 * 352.43823 * 6 5 4 9 9 C 1.46921 * 120.63717 * 352.97618 * 8 6 5 10 10 C 1.53189 * 108.77725 * 233.63344 * 9 8 6 11 11 C 1.53044 * 109.31365 * 305.36369 * 10 9 8 12 12 C 1.53042 * 109.53435 * 61.36248 * 11 10 9 13 13 H 1.09006 * 109.51992 * 58.60885 * 12 11 10 14 14 C 1.53001 * 109.49313 * 178.68118 * 12 11 10 15 15 H 1.09000 * 110.88402 * 62.27371 * 14 12 11 16 16 C 1.55155 * 111.03496 * 186.17202 * 14 12 11 17 17 C 1.54341 * 103.02181 * 153.39929 * 16 14 12 18 18 N 1.47020 * 107.26013 * 338.14245 * 17 16 14 19 19 C 1.36945 * 125.64441 * 178.84842 * 18 17 16 20 20 H 1.08001 * 119.99493 * 179.68945 * 19 18 17 21 21 C 1.38809 * 119.99788 * 359.41840 * 19 18 17 22 22 N 1.31619 * 120.00455 * 0.27128 * 21 19 18 23 23 Si 1.86806 * 119.99747 * 180.27517 * 21 19 18 24 24 H 1.48501 * 109.47206 * 59.99548 * 23 21 19 25 25 H 1.48494 * 109.47060 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.46851 * 299.99850 * 23 21 19 27 27 C 1.47418 * 108.70884 * 358.58113 * 18 17 16 28 28 C 1.46932 * 120.62290 * 173.00067 * 8 6 5 29 29 N 1.28872 * 125.31882 * 180.31966 * 2 1 3 30 30 H 1.09002 * 109.47439 * 90.02377 * 1 2 3 31 31 H 1.09000 * 109.47069 * 210.02428 * 1 2 3 32 32 H 1.09002 * 109.47406 * 330.02197 * 1 2 3 33 33 H 1.09001 * 109.58172 * 353.42061 * 9 8 6 34 34 H 1.09003 * 109.58673 * 113.70108 * 9 8 6 35 35 H 1.09006 * 109.50005 * 65.31489 * 10 9 8 36 36 H 1.09002 * 109.50142 * 185.37818 * 10 9 8 37 37 H 1.08999 * 109.45736 * 301.34715 * 11 10 9 38 38 H 1.08991 * 109.45952 * 181.38517 * 11 10 9 39 39 H 1.08997 * 110.72170 * 271.95249 * 16 14 12 40 40 H 1.08998 * 110.72376 * 35.05701 * 16 14 12 41 41 H 1.08997 * 109.98947 * 218.66550 * 17 16 14 42 42 H 1.09000 * 109.77622 * 97.49483 * 17 16 14 43 43 H 0.96993 * 120.00277 * 180.02562 * 22 21 19 44 44 H 1.09005 * 110.37072 * 143.19589 * 27 18 17 45 45 H 1.09000 * 110.37065 * 265.41176 * 27 18 17 46 46 H 1.08994 * 109.59154 * 6.58459 * 28 8 6 47 47 H 1.08995 * 109.70357 * 246.22371 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2092 1.0503 0.0000 4 7 3.4469 0.6875 -0.0005 5 6 3.4685 -0.6542 -0.0015 6 6 4.6693 -1.5195 -0.0018 7 8 4.5522 -2.7213 0.1359 8 7 5.8924 -0.9746 -0.1548 9 6 6.0421 0.4515 -0.4749 10 6 6.9175 0.5872 -1.7246 11 6 8.2404 -0.1483 -1.4982 12 6 7.9653 -1.6348 -1.2601 13 1 7.4390 -2.0500 -2.1197 14 6 9.2904 -2.3748 -1.0665 15 1 9.8169 -2.0050 -0.1867 16 6 9.0646 -3.9071 -0.9763 17 6 10.4067 -4.4862 -1.4717 18 7 11.0610 -3.4441 -2.2763 19 6 12.2856 -3.5528 -2.8795 20 1 12.6786 -2.7284 -3.4560 21 6 13.0241 -4.7204 -2.7453 22 7 12.5451 -5.7251 -2.0428 23 14 14.6980 -4.8658 -3.5618 24 1 15.5989 -3.8090 -3.0357 25 1 15.2777 -6.2010 -3.2681 26 1 14.5483 -4.7028 -5.0302 27 6 10.1777 -2.2651 -2.3316 28 6 7.1017 -1.7957 -0.0051 29 7 2.2100 -1.0515 -0.0059 30 1 -0.3634 -0.0004 -1.0277 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3634 0.8902 0.5135 33 1 5.0617 0.8878 -0.6664 34 1 6.5139 0.9663 0.3621 35 1 6.4009 0.1515 -2.5799 36 1 7.1154 1.6416 -1.9176 37 1 8.7449 0.2715 -0.6279 38 1 8.8752 -0.0326 -2.3766 39 1 8.8685 -4.2081 0.0528 40 1 8.2481 -4.2158 -1.6291 41 1 10.2278 -5.3699 -2.0842 42 1 11.0342 -4.7446 -0.6187 43 1 13.0614 -6.5408 -1.9487 44 1 10.7665 -1.3482 -2.3037 45 1 9.5632 -2.2933 -3.2315 46 1 6.8205 -2.8421 0.1132 47 1 7.6631 -1.4670 0.8694 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961222736.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:17 Heat of formation + Delta-G solvation = 109.343058 kcal Electronic energy + Delta-G solvation = -29109.258694 eV Core-core repulsion = 25137.557844 eV Total energy + Delta-G solvation = -3971.700850 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -45.59653 -41.40490 -39.69671 -38.09441 -36.42671 -35.15052 -34.37548 -33.67097 -32.55557 -30.74338 -29.99745 -28.75622 -27.22629 -26.53863 -25.31308 -24.34308 -23.67471 -22.53137 -21.63764 -20.96822 -20.67266 -18.97304 -18.77103 -18.70465 -17.87152 -17.44045 -16.91247 -16.57256 -16.04531 -15.80935 -15.60767 -15.31979 -15.19808 -14.56576 -14.41704 -14.29651 -14.11375 -14.03403 -13.93853 -13.78311 -13.55074 -13.35279 -13.10716 -12.81949 -12.70887 -12.52162 -12.28666 -12.24581 -12.11724 -12.01531 -11.86524 -11.71696 -11.70402 -11.59456 -11.46631 -11.35917 -11.09291 -10.89993 -10.68356 -9.77254 -8.87097 -7.82523 -5.18339 -0.19653 0.20144 0.78339 1.45487 1.49606 1.55800 1.58973 1.81346 2.51210 2.65100 2.98734 3.34922 3.56715 3.69986 3.77675 3.87537 3.95818 4.03268 4.11758 4.22412 4.24122 4.27465 4.37666 4.44223 4.48764 4.57894 4.59688 4.71448 4.75274 4.79522 4.90830 4.94594 4.96055 4.97973 5.07903 5.11075 5.17402 5.19466 5.37580 5.43986 5.47313 5.50335 5.58744 5.69946 5.80101 6.09245 6.22371 6.68913 7.01041 7.12206 7.81001 8.46330 9.27892 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.033065 B = 0.002224 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.620473 B =12587.513167 C =13148.325660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.113 5.113 3 N -0.060 5.060 4 N -0.259 5.259 5 C 0.122 3.878 6 C 0.608 3.392 7 O -0.549 6.549 8 N -0.580 5.580 9 C 0.081 3.919 10 C -0.125 4.125 11 C -0.115 4.115 12 C -0.074 4.074 13 H 0.061 0.939 14 C -0.075 4.075 15 H 0.084 0.916 16 C -0.128 4.128 17 C 0.185 3.815 18 N -0.630 5.630 19 C -0.241 4.241 20 H 0.084 0.916 21 C -0.073 4.073 22 N -0.954 5.954 23 Si 0.981 3.019 24 H -0.274 1.274 25 H -0.296 1.296 26 H -0.277 1.277 27 C 0.142 3.858 28 C 0.121 3.879 29 N -0.266 5.266 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.145 0.855 33 H 0.122 0.878 34 H 0.092 0.908 35 H 0.054 0.946 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.059 0.941 41 H -0.002 1.002 42 H 0.011 0.989 43 H 0.246 0.754 44 H 0.047 0.953 45 H 0.017 0.983 46 H 0.079 0.921 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.206 18.872 5.727 32.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.028 5.028 3 N -0.053 5.053 4 N -0.133 5.133 5 C -0.162 4.162 6 C 0.391 3.609 7 O -0.424 6.424 8 N -0.312 5.312 9 C -0.040 4.040 10 C -0.164 4.164 11 C -0.152 4.152 12 C -0.094 4.094 13 H 0.079 0.921 14 C -0.095 4.095 15 H 0.102 0.898 16 C -0.166 4.166 17 C 0.060 3.940 18 N -0.357 5.357 19 C -0.370 4.370 20 H 0.102 0.898 21 C -0.265 4.265 22 N -0.603 5.603 23 Si 0.809 3.191 24 H -0.200 1.200 25 H -0.222 1.222 26 H -0.203 1.203 27 C 0.017 3.983 28 C -0.001 4.001 29 N -0.121 5.121 30 H 0.148 0.852 31 H 0.148 0.852 32 H 0.163 0.837 33 H 0.139 0.861 34 H 0.110 0.890 35 H 0.073 0.927 36 H 0.121 0.879 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.077 0.923 41 H 0.016 0.984 42 H 0.029 0.971 43 H 0.055 0.945 44 H 0.066 0.934 45 H 0.035 0.965 46 H 0.098 0.902 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -26.511 18.633 5.785 32.916 hybrid contribution 1.288 -1.344 -0.538 1.937 sum -25.223 17.289 5.247 31.027 Atomic orbital electron populations 1.23282 0.64950 1.09513 1.08741 1.50778 1.12705 0.99405 1.39962 1.78873 0.96434 1.14535 1.15430 1.75928 1.10317 1.09351 1.17678 1.25030 0.93020 0.90525 1.07607 1.16420 0.81428 0.85202 0.77851 1.90837 1.85605 1.14763 1.51240 1.47941 1.03945 1.12302 1.66983 1.22723 1.04231 0.78408 0.98687 1.21893 0.95225 1.02342 0.96893 1.21615 0.97667 0.92815 1.03108 1.21314 0.93799 0.96993 0.97317 0.92092 1.22167 0.94936 0.94090 0.98263 0.89791 1.22792 0.96686 0.96142 1.01024 1.20877 0.90295 0.90023 0.92805 1.44846 1.17679 1.13400 1.59733 1.19462 0.93181 0.99679 1.24696 0.89799 1.25723 1.02812 0.96276 1.01694 1.70211 1.38910 1.05359 1.45855 0.85117 0.79309 0.76506 0.78197 1.19983 1.22218 1.20329 1.21703 0.91505 0.89632 0.95489 1.21795 0.83633 0.96086 0.98561 1.75084 1.02500 1.15686 1.18875 0.85212 0.85204 0.83675 0.86092 0.88979 0.92668 0.87906 0.90154 0.91370 0.90397 0.92259 0.98406 0.97072 0.94532 0.93423 0.96539 0.90225 0.88779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.04 11.62 127.77 1.49 1.53 16 2 N -0.11 -1.61 4.39 -206.58 -0.91 -2.52 16 3 N -0.06 -1.04 13.23 37.02 0.49 -0.55 16 4 N -0.26 -5.43 9.07 -52.36 -0.48 -5.90 16 5 C 0.12 2.98 7.80 137.15 1.07 4.05 16 6 C 0.61 17.19 7.70 86.83 0.67 17.86 16 7 O -0.55 -19.41 16.52 -3.81 -0.06 -19.47 16 8 N -0.58 -13.76 2.97 -822.14 -2.44 -16.20 16 9 C 0.08 1.45 6.11 86.36 0.53 1.98 16 10 C -0.13 -2.12 6.08 30.67 0.19 -1.93 16 11 C -0.11 -2.34 4.99 30.62 0.15 -2.19 16 12 C -0.07 -1.93 1.85 -10.72 -0.02 -1.95 16 13 H 0.06 1.78 8.11 -2.38 -0.02 1.76 16 14 C -0.07 -2.46 2.57 -9.40 -0.02 -2.49 16 15 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 16 C -0.13 -4.96 5.70 31.79 0.18 -4.78 16 17 C 0.19 9.68 5.38 86.74 0.47 10.14 16 18 N -0.63 -33.60 3.39 -691.96 -2.35 -35.95 16 19 C -0.24 -13.93 10.28 84.03 0.86 -13.07 16 20 H 0.08 4.57 7.83 -2.91 -0.02 4.55 16 21 C -0.07 -4.28 5.49 84.86 0.47 -3.81 16 22 N -0.95 -59.78 10.31 21.65 0.22 -59.56 16 23 Si 0.98 47.03 29.55 68.60 2.03 49.06 16 24 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 25 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 26 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 27 C 0.14 5.77 5.66 86.86 0.49 6.26 16 28 C 0.12 2.99 5.49 86.36 0.47 3.46 16 29 N -0.27 -5.91 12.17 -52.31 -0.64 -6.55 16 30 H 0.13 -0.43 8.14 -2.39 -0.02 -0.45 16 31 H 0.13 -0.24 8.14 -2.39 -0.02 -0.26 16 32 H 0.15 -0.70 8.14 -2.39 -0.02 -0.72 16 33 H 0.12 2.23 4.17 -19.58 -0.08 2.14 16 34 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.07 1.49 7.21 -2.39 -0.02 1.47 16 39 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 40 H 0.06 2.25 8.01 -2.39 -0.02 2.24 16 41 H 0.00 -0.14 7.53 -2.39 -0.02 -0.16 16 42 H 0.01 0.64 7.36 -2.39 -0.02 0.62 16 43 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 44 H 0.05 1.84 8.02 -2.38 -0.02 1.82 16 45 H 0.02 0.69 8.04 -2.39 -0.02 0.67 16 46 H 0.08 2.31 6.56 -2.39 -0.02 2.30 16 47 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -81.27 372.21 3.76 -77.51 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: 0.91 Total: 5.08 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: 6.99 Total: 15.06 kcal Atomic # 7 Polarization: -121.13 SS G_CDS: -6.10 Total: -127.23 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.06 Total: -19.47 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -81.27 3.76 -77.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961222736.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.848 kcal (2) G-P(sol) polarization free energy of solvation -81.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds