Wall clock time and date at job start Tue Mar 31 2020 18:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28715 * 125.32220 * 2 1 4 4 N 1.28983 * 108.98848 * 179.97438 * 3 2 1 5 5 C 1.34180 * 107.25385 * 0.02562 * 4 3 2 6 6 C 1.48008 * 126.69990 * 179.97438 * 5 4 3 7 7 O 1.21534 * 119.99986 * 187.54016 * 6 5 4 8 8 N 1.34772 * 120.00082 * 7.54248 * 6 5 4 9 9 C 1.46933 * 120.62812 * 6.74215 * 8 6 5 10 10 C 1.53623 * 108.54317 * 126.37383 * 9 8 6 11 11 C 1.53046 * 109.24405 * 54.85180 * 10 9 8 12 12 C 1.53045 * 109.53763 * 298.51267 * 11 10 9 13 13 H 1.08995 * 109.50087 * 301.41431 * 12 11 10 14 14 C 1.53002 * 109.52091 * 181.32872 * 12 11 10 15 15 H 1.08990 * 110.88653 * 300.85014 * 14 12 11 16 16 C 1.55150 * 111.00124 * 176.96680 * 14 12 11 17 17 C 1.54371 * 102.92262 * 206.45798 * 16 14 12 18 18 N 1.47023 * 107.28702 * 22.13503 * 17 16 14 19 19 C 1.36931 * 125.64993 * 181.05450 * 18 17 16 20 20 H 1.08004 * 120.00567 * 180.02562 * 19 18 17 21 21 C 1.38811 * 120.00089 * 0.05038 * 19 18 17 22 22 N 1.31620 * 119.99874 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00217 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47123 * 60.00333 * 23 21 19 25 25 H 1.48495 * 109.47374 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47185 * 300.00129 * 23 21 19 27 27 C 1.47429 * 108.70168 * 1.09763 * 18 17 16 28 28 C 1.46926 * 120.63454 * 187.02489 * 8 6 5 29 29 N 1.28869 * 125.32032 * 179.97438 * 2 1 3 30 30 H 1.08995 * 109.47098 * 90.02414 * 1 2 3 31 31 H 1.09002 * 109.47629 * 210.02297 * 1 2 3 32 32 H 1.09001 * 109.47228 * 330.02344 * 1 2 3 33 33 H 1.09004 * 109.58281 * 246.19933 * 9 8 6 34 34 H 1.08997 * 109.58579 * 6.62556 * 9 8 6 35 35 H 1.09004 * 109.62986 * 294.86608 * 10 9 8 36 36 H 1.09000 * 109.46138 * 174.74469 * 10 9 8 37 37 H 1.09001 * 109.45651 * 178.49502 * 11 10 9 38 38 H 1.08997 * 109.44687 * 58.53102 * 11 10 9 39 39 H 1.08994 * 110.72455 * 324.78919 * 16 14 12 40 40 H 1.09000 * 110.72301 * 88.06312 * 16 14 12 41 41 H 1.09007 * 109.84657 * 262.73738 * 17 16 14 42 42 H 1.08993 * 110.03569 * 141.65137 * 17 16 14 43 43 H 0.97002 * 120.00150 * 179.97438 * 22 21 19 44 44 H 1.08999 * 110.36306 * 217.02336 * 27 18 17 45 45 H 1.09003 * 110.36364 * 94.71049 * 27 18 17 46 46 H 1.09003 * 109.58365 * 353.37179 * 28 8 6 47 47 H 1.09005 * 109.58894 * 113.79492 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2092 1.0502 0.0000 4 7 3.4469 0.6875 0.0005 5 6 3.4685 -0.6542 0.0003 6 6 4.6692 -1.5195 0.0002 7 8 4.5522 -2.7213 -0.1381 8 7 5.8924 -0.9749 0.1536 9 6 6.0421 0.4525 0.4685 10 6 6.9183 0.5867 1.7232 11 6 8.2411 -0.1486 1.4958 12 6 7.9660 -1.6352 1.2576 13 1 7.4400 -2.0502 2.1173 14 6 9.2908 -2.3755 1.0631 15 1 9.8425 -1.9688 0.2157 16 6 9.0562 -3.8999 0.8942 17 6 10.3833 -4.5107 1.3930 18 7 11.0214 -3.5151 2.2666 19 6 12.2289 -3.6622 2.8953 20 1 12.6130 -2.8689 3.5196 21 6 12.9597 -4.8307 2.7301 22 7 12.4918 -5.7975 1.9694 23 14 14.6073 -5.0311 3.5872 24 1 14.4161 -4.9325 5.0566 25 1 15.1818 -6.3587 3.2515 26 1 15.5336 -3.9619 3.1356 27 6 10.1454 -2.3326 2.3544 28 6 7.1017 -1.7957 0.0030 29 7 2.2100 -1.0515 0.0005 30 1 -0.3633 -0.0004 -1.0276 31 1 -0.3634 -0.8898 0.5142 32 1 -0.3634 0.8902 0.5135 33 1 6.5176 0.9634 -0.3688 34 1 5.0617 0.8899 0.6571 35 1 6.4021 0.1507 2.5786 36 1 7.1165 1.6409 1.9167 37 1 8.8764 -0.0331 2.3740 38 1 8.7449 0.2716 0.6253 39 1 8.2226 -4.2327 1.5124 40 1 8.8852 -4.1501 -0.1528 41 1 11.0320 -4.7293 0.5446 42 1 10.1864 -5.4242 1.9539 43 1 13.0026 -6.6140 1.8535 44 1 10.7414 -1.4205 2.3848 45 1 9.5062 -2.3986 3.2349 46 1 6.8205 -2.8421 -0.1156 47 1 7.6617 -1.4643 -0.8715 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961222744.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:22 Heat of formation + Delta-G solvation = 133.853291 kcal Electronic energy + Delta-G solvation = -29112.185990 eV Core-core repulsion = 25141.547984 eV Total energy + Delta-G solvation = -3970.638007 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.84417 -40.34791 -38.30099 -36.71542 -35.72942 -33.67696 -33.52940 -32.30543 -31.13721 -29.49701 -28.82053 -27.35637 -26.21019 -24.88760 -24.17404 -23.48905 -22.67983 -21.34871 -19.84053 -19.79794 -19.45209 -18.11660 -18.03900 -17.12883 -16.72332 -16.39227 -15.61302 -14.91118 -14.85918 -14.56301 -14.34451 -14.12267 -14.03449 -13.83863 -13.78029 -13.40965 -13.14266 -13.06985 -12.59400 -12.24669 -12.11975 -11.96305 -11.72024 -11.55298 -11.50643 -11.13591 -10.97570 -10.86289 -10.81314 -10.74130 -10.66573 -10.55466 -10.29650 -10.07068 -9.90959 -9.71982 -9.60762 -9.52186 -8.75585 -8.52050 -6.73991 -5.63335 -2.96452 0.58914 1.05197 1.31348 2.46118 2.81734 3.44888 3.48746 3.50374 3.53904 3.65526 4.27160 4.33560 4.55746 4.58449 4.63803 4.80605 4.90056 4.92839 4.99559 5.11126 5.25438 5.44594 5.51219 5.54471 5.57821 5.63212 5.73423 5.76622 5.82271 5.89415 6.01925 6.02731 6.09653 6.13116 6.31667 6.36746 6.46581 6.52956 6.66162 6.68770 6.83617 7.06247 7.08685 7.63303 7.64383 7.74589 7.86559 7.91970 8.35092 9.30355 9.91150 10.58264 11.48205 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.032594 B = 0.002229 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.839400 B =12561.021491 C =13116.395930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.133 5.133 3 N -0.059 5.059 4 N -0.254 5.254 5 C 0.139 3.861 6 C 0.612 3.388 7 O -0.507 6.507 8 N -0.586 5.586 9 C 0.082 3.918 10 C -0.133 4.133 11 C -0.117 4.117 12 C -0.086 4.086 13 H 0.075 0.925 14 C -0.094 4.094 15 H 0.075 0.925 16 C -0.141 4.141 17 C 0.177 3.823 18 N -0.607 5.607 19 C -0.226 4.226 20 H 0.076 0.924 21 C -0.010 4.010 22 N -0.922 5.922 23 Si 0.911 3.089 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.145 3.855 28 C 0.118 3.882 29 N -0.247 5.247 30 H 0.106 0.894 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.074 0.926 34 H 0.121 0.879 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.044 0.956 42 H 0.040 0.960 43 H 0.252 0.748 44 H 0.036 0.964 45 H 0.016 0.984 46 H 0.099 0.901 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.699 16.169 -5.396 30.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.046 5.046 3 N -0.052 5.052 4 N -0.129 5.129 5 C -0.145 4.145 6 C 0.393 3.607 7 O -0.379 6.379 8 N -0.318 5.318 9 C -0.041 4.041 10 C -0.171 4.171 11 C -0.155 4.155 12 C -0.106 4.106 13 H 0.093 0.907 14 C -0.114 4.114 15 H 0.093 0.907 16 C -0.180 4.180 17 C 0.053 3.947 18 N -0.333 5.333 19 C -0.355 4.355 20 H 0.094 0.906 21 C -0.207 4.207 22 N -0.570 5.570 23 Si 0.742 3.258 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.212 1.212 27 C 0.019 3.981 28 C -0.003 4.003 29 N -0.101 5.101 30 H 0.125 0.875 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.092 0.908 34 H 0.138 0.862 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.054 0.946 45 H 0.034 0.966 46 H 0.117 0.883 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -24.983 15.843 -5.467 30.083 hybrid contribution 1.020 -0.492 0.446 1.217 sum -23.963 15.351 -5.021 28.898 Atomic orbital electron populations 1.22587 0.68346 1.07365 1.06541 1.50242 1.11179 1.00637 1.42563 1.78948 0.96696 1.14263 1.15273 1.75970 1.09396 1.10162 1.17328 1.25373 0.93180 0.90140 1.05833 1.16187 0.80591 0.85496 0.78465 1.90871 1.84878 1.13018 1.49086 1.47884 1.04631 1.11385 1.67942 1.22648 1.03769 0.79859 0.97842 1.22001 0.96556 1.01086 0.97448 1.21630 0.96604 0.94617 1.02634 1.21478 0.95976 0.95708 0.97456 0.90660 1.22309 0.93846 0.95556 0.99737 0.90669 1.22946 1.00221 0.94669 1.00123 1.21135 0.88387 0.91316 0.93899 1.44489 1.19393 1.13802 1.55654 1.19006 0.93591 1.00575 1.22325 0.90611 1.24807 0.98975 0.96609 1.00265 1.69969 1.38234 1.06809 1.41976 0.86209 0.83654 0.76877 0.79071 1.21257 1.21657 1.21230 1.21517 0.91855 0.91084 0.93663 1.21907 0.83309 0.96676 0.98380 1.75125 1.02411 1.14270 1.18310 0.87532 0.86640 0.86475 0.90811 0.86215 0.91720 0.90557 0.90926 0.91626 0.92488 0.92297 0.93784 0.94150 0.93791 0.94574 0.96628 0.88308 0.90689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.16 11.62 59.84 0.70 0.85 16 2 N -0.13 -1.08 4.39 -16.65 -0.07 -1.15 16 3 N -0.06 -0.57 13.23 60.35 0.80 0.23 16 4 N -0.25 -2.87 9.06 32.10 0.29 -2.58 16 5 C 0.14 1.76 7.80 -156.25 -1.22 0.54 16 6 C 0.61 8.73 7.70 -12.26 -0.09 8.63 16 7 O -0.51 -8.79 16.52 5.34 0.09 -8.70 16 8 N -0.59 -7.34 2.97 -173.55 -0.51 -7.85 16 9 C 0.08 0.83 6.14 -3.48 -0.02 0.81 16 10 C -0.13 -1.31 6.10 -26.38 -0.16 -1.47 16 11 C -0.12 -1.35 5.02 -26.68 -0.13 -1.49 16 12 C -0.09 -1.19 1.84 -90.50 -0.17 -1.35 16 13 H 0.07 1.13 8.13 -51.93 -0.42 0.71 16 14 C -0.09 -1.61 2.56 -88.48 -0.23 -1.84 16 15 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 16 C -0.14 -2.71 5.55 -24.88 -0.14 -2.84 16 17 C 0.18 4.44 5.38 -3.04 -0.02 4.43 16 18 N -0.61 -15.90 3.39 -170.04 -0.58 -16.47 16 19 C -0.23 -6.46 10.28 -15.06 -0.15 -6.62 16 20 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 21 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 22 N -0.92 -27.81 10.31 55.49 0.57 -27.24 16 23 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 C 0.15 3.00 5.81 -2.53 -0.01 2.99 16 28 C 0.12 1.55 5.44 -3.71 -0.02 1.53 16 29 N -0.25 -2.87 12.17 32.11 0.39 -2.48 16 30 H 0.11 -0.01 8.14 -51.93 -0.42 -0.43 16 31 H 0.12 0.05 8.14 -51.93 -0.42 -0.37 16 32 H 0.12 -0.07 8.14 -51.93 -0.42 -0.49 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.12 1.23 4.16 -66.78 -0.28 0.96 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.88 7.33 -51.93 -0.38 0.50 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.06 1.07 8.04 -51.93 -0.42 0.65 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.04 1.21 7.38 -51.93 -0.38 0.83 16 42 H 0.04 1.13 7.50 -51.93 -0.39 0.74 16 43 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.04 0.72 8.03 -51.93 -0.42 0.31 16 45 H 0.02 0.33 8.03 -51.93 -0.42 -0.08 16 46 H 0.10 1.46 6.46 -51.93 -0.34 1.12 16 47 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 372.26 15.07 5.61 5.61 Total: -1.00 -35.79 372.26 -7.42 -43.21 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -7.21 Total: -3.88 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -1.77 Total: 3.77 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: 0.89 Total: -57.55 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.09 Total: -8.70 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.79 -7.42 -43.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961222744.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.061 kcal (2) G-P(sol) polarization free energy of solvation -35.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds