Wall clock time and date at job start Tue Mar 31 2020 18:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28715 * 125.32220 * 2 1 4 4 N 1.28983 * 108.98848 * 179.97438 * 3 2 1 5 5 C 1.34180 * 107.25385 * 0.02562 * 4 3 2 6 6 C 1.48008 * 126.69990 * 179.97438 * 5 4 3 7 7 O 1.21534 * 119.99986 * 187.54016 * 6 5 4 8 8 N 1.34772 * 120.00082 * 7.54248 * 6 5 4 9 9 C 1.46933 * 120.62812 * 6.74215 * 8 6 5 10 10 C 1.53623 * 108.54317 * 126.37383 * 9 8 6 11 11 C 1.53046 * 109.24405 * 54.85180 * 10 9 8 12 12 C 1.53045 * 109.53763 * 298.51267 * 11 10 9 13 13 H 1.08995 * 109.50087 * 301.41431 * 12 11 10 14 14 C 1.53002 * 109.52091 * 181.32872 * 12 11 10 15 15 H 1.08990 * 110.88653 * 300.85014 * 14 12 11 16 16 C 1.55150 * 111.00124 * 176.96680 * 14 12 11 17 17 C 1.54371 * 102.92262 * 206.45798 * 16 14 12 18 18 N 1.47023 * 107.28702 * 22.13503 * 17 16 14 19 19 C 1.36931 * 125.64993 * 181.05450 * 18 17 16 20 20 H 1.08004 * 120.00567 * 180.02562 * 19 18 17 21 21 C 1.38811 * 120.00089 * 0.05038 * 19 18 17 22 22 N 1.31620 * 119.99874 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00217 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47123 * 60.00333 * 23 21 19 25 25 H 1.48495 * 109.47374 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47185 * 300.00129 * 23 21 19 27 27 C 1.47429 * 108.70168 * 1.09763 * 18 17 16 28 28 C 1.46926 * 120.63454 * 187.02489 * 8 6 5 29 29 N 1.28869 * 125.32032 * 179.97438 * 2 1 3 30 30 H 1.08995 * 109.47098 * 90.02414 * 1 2 3 31 31 H 1.09002 * 109.47629 * 210.02297 * 1 2 3 32 32 H 1.09001 * 109.47228 * 330.02344 * 1 2 3 33 33 H 1.09004 * 109.58281 * 246.19933 * 9 8 6 34 34 H 1.08997 * 109.58579 * 6.62556 * 9 8 6 35 35 H 1.09004 * 109.62986 * 294.86608 * 10 9 8 36 36 H 1.09000 * 109.46138 * 174.74469 * 10 9 8 37 37 H 1.09001 * 109.45651 * 178.49502 * 11 10 9 38 38 H 1.08997 * 109.44687 * 58.53102 * 11 10 9 39 39 H 1.08994 * 110.72455 * 324.78919 * 16 14 12 40 40 H 1.09000 * 110.72301 * 88.06312 * 16 14 12 41 41 H 1.09007 * 109.84657 * 262.73738 * 17 16 14 42 42 H 1.08993 * 110.03569 * 141.65137 * 17 16 14 43 43 H 0.97002 * 120.00150 * 179.97438 * 22 21 19 44 44 H 1.08999 * 110.36306 * 217.02336 * 27 18 17 45 45 H 1.09003 * 110.36364 * 94.71049 * 27 18 17 46 46 H 1.09003 * 109.58365 * 353.37179 * 28 8 6 47 47 H 1.09005 * 109.58894 * 113.79492 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2092 1.0502 0.0000 4 7 3.4469 0.6875 0.0005 5 6 3.4685 -0.6542 0.0003 6 6 4.6692 -1.5195 0.0002 7 8 4.5522 -2.7213 -0.1381 8 7 5.8924 -0.9749 0.1536 9 6 6.0421 0.4525 0.4685 10 6 6.9183 0.5867 1.7232 11 6 8.2411 -0.1486 1.4958 12 6 7.9660 -1.6352 1.2576 13 1 7.4400 -2.0502 2.1173 14 6 9.2908 -2.3755 1.0631 15 1 9.8425 -1.9688 0.2157 16 6 9.0562 -3.8999 0.8942 17 6 10.3833 -4.5107 1.3930 18 7 11.0214 -3.5151 2.2666 19 6 12.2289 -3.6622 2.8953 20 1 12.6130 -2.8689 3.5196 21 6 12.9597 -4.8307 2.7301 22 7 12.4918 -5.7975 1.9694 23 14 14.6073 -5.0311 3.5872 24 1 14.4161 -4.9325 5.0566 25 1 15.1818 -6.3587 3.2515 26 1 15.5336 -3.9619 3.1356 27 6 10.1454 -2.3326 2.3544 28 6 7.1017 -1.7957 0.0030 29 7 2.2100 -1.0515 0.0005 30 1 -0.3633 -0.0004 -1.0276 31 1 -0.3634 -0.8898 0.5142 32 1 -0.3634 0.8902 0.5135 33 1 6.5176 0.9634 -0.3688 34 1 5.0617 0.8899 0.6571 35 1 6.4021 0.1507 2.5786 36 1 7.1165 1.6409 1.9167 37 1 8.8764 -0.0331 2.3740 38 1 8.7449 0.2716 0.6253 39 1 8.2226 -4.2327 1.5124 40 1 8.8852 -4.1501 -0.1528 41 1 11.0320 -4.7293 0.5446 42 1 10.1864 -5.4242 1.9539 43 1 13.0026 -6.6140 1.8535 44 1 10.7414 -1.4205 2.3848 45 1 9.5062 -2.3986 3.2349 46 1 6.8205 -2.8421 -0.1156 47 1 7.6617 -1.4643 -0.8715 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961222744.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:21 Heat of formation + Delta-G solvation = 109.449128 kcal Electronic energy + Delta-G solvation = -29113.244234 eV Core-core repulsion = 25141.547984 eV Total energy + Delta-G solvation = -3971.696251 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -45.59796 -41.40067 -39.69334 -38.08698 -36.42838 -35.14976 -34.37529 -33.67146 -32.53849 -30.72978 -29.99718 -28.76208 -27.23081 -26.53028 -25.30469 -24.34844 -23.68787 -22.50936 -21.63887 -20.97335 -20.67758 -18.96626 -18.77362 -18.70988 -17.87148 -17.43648 -16.90850 -16.56863 -16.04831 -15.81545 -15.60271 -15.31670 -15.19678 -14.58087 -14.41303 -14.27353 -14.13124 -14.02405 -13.92920 -13.78576 -13.54922 -13.34951 -13.10704 -12.82424 -12.70967 -12.51495 -12.29308 -12.26285 -12.11419 -12.00544 -11.85965 -11.70874 -11.70662 -11.59176 -11.46679 -11.36247 -11.09834 -10.90245 -10.68328 -9.76911 -8.87195 -7.82596 -5.18345 -0.19593 0.20091 0.78342 1.45410 1.49551 1.55730 1.59137 1.81409 2.51149 2.65127 2.98724 3.34832 3.56843 3.70015 3.77419 3.87547 3.96114 4.03104 4.11019 4.22591 4.24033 4.28061 4.37753 4.44329 4.48630 4.57945 4.59592 4.71195 4.75063 4.79637 4.91138 4.94412 4.95763 4.97869 5.08087 5.11104 5.17595 5.19368 5.37820 5.43858 5.47203 5.50467 5.58684 5.70168 5.80190 6.09353 6.22331 6.69044 7.01075 7.12133 7.80909 8.46300 9.27807 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.032594 B = 0.002229 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.839400 B =12561.021491 C =13116.395930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.113 5.113 3 N -0.060 5.060 4 N -0.259 5.259 5 C 0.122 3.878 6 C 0.608 3.392 7 O -0.550 6.550 8 N -0.580 5.580 9 C 0.081 3.919 10 C -0.125 4.125 11 C -0.114 4.114 12 C -0.075 4.075 13 H 0.060 0.940 14 C -0.075 4.075 15 H 0.084 0.916 16 C -0.128 4.128 17 C 0.185 3.815 18 N -0.630 5.630 19 C -0.241 4.241 20 H 0.084 0.916 21 C -0.073 4.073 22 N -0.954 5.954 23 Si 0.981 3.019 24 H -0.277 1.277 25 H -0.296 1.296 26 H -0.274 1.274 27 C 0.141 3.859 28 C 0.121 3.879 29 N -0.266 5.266 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.145 0.855 33 H 0.092 0.908 34 H 0.123 0.877 35 H 0.055 0.945 36 H 0.102 0.898 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.059 0.941 40 H 0.078 0.922 41 H 0.010 0.990 42 H -0.002 1.002 43 H 0.245 0.755 44 H 0.047 0.953 45 H 0.017 0.983 46 H 0.079 0.921 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.018 19.171 -5.505 32.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.028 5.028 3 N -0.053 5.053 4 N -0.133 5.133 5 C -0.162 4.162 6 C 0.391 3.609 7 O -0.425 6.425 8 N -0.312 5.312 9 C -0.041 4.041 10 C -0.163 4.163 11 C -0.152 4.152 12 C -0.094 4.094 13 H 0.079 0.921 14 C -0.095 4.095 15 H 0.102 0.898 16 C -0.166 4.166 17 C 0.060 3.940 18 N -0.357 5.357 19 C -0.370 4.370 20 H 0.102 0.898 21 C -0.265 4.265 22 N -0.603 5.603 23 Si 0.809 3.191 24 H -0.204 1.204 25 H -0.222 1.222 26 H -0.200 1.200 27 C 0.016 3.984 28 C -0.001 4.001 29 N -0.122 5.122 30 H 0.148 0.852 31 H 0.148 0.852 32 H 0.163 0.837 33 H 0.110 0.890 34 H 0.140 0.860 35 H 0.074 0.926 36 H 0.121 0.879 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.097 0.903 41 H 0.028 0.972 42 H 0.017 0.983 43 H 0.055 0.945 44 H 0.066 0.934 45 H 0.034 0.966 46 H 0.098 0.902 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -26.325 18.928 -5.561 32.897 hybrid contribution 1.274 -1.373 0.504 1.939 sum -25.051 17.555 -5.057 31.005 Atomic orbital electron populations 1.23281 0.64949 1.09507 1.08746 1.50774 1.12704 0.99404 1.39956 1.78871 0.96433 1.14536 1.15428 1.75918 1.10314 1.09347 1.17696 1.25027 0.93019 0.90523 1.07598 1.16423 0.81441 0.85209 0.77856 1.90839 1.85614 1.14778 1.51241 1.47951 1.03944 1.12270 1.67023 1.22835 1.04250 0.78354 0.98667 1.21966 0.95215 1.02313 0.96843 1.21616 0.97675 0.92786 1.03105 1.21313 0.93807 0.97003 0.97306 0.92107 1.22169 0.95079 0.94190 0.98013 0.89766 1.22794 0.96748 0.96065 1.01009 1.20890 0.90540 0.90523 0.92083 1.44842 1.19575 1.15741 1.55499 1.19459 0.94582 1.00767 1.22211 0.89813 1.25725 1.02836 0.96503 1.01454 1.70215 1.39477 1.07067 1.43570 0.85115 0.79266 0.76579 0.78155 1.20350 1.22213 1.19967 1.21708 0.91686 0.89501 0.95471 1.21808 0.83612 0.96085 0.98577 1.75083 1.02504 1.15691 1.18880 0.85177 0.85230 0.83683 0.88961 0.86019 0.92647 0.87938 0.91361 0.90147 0.92247 0.90327 0.97150 0.98333 0.94535 0.93439 0.96565 0.90217 0.88790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.04 11.62 127.77 1.49 1.53 16 2 N -0.11 -1.61 4.39 -206.59 -0.91 -2.52 16 3 N -0.06 -1.04 13.23 37.02 0.49 -0.55 16 4 N -0.26 -5.43 9.06 -52.37 -0.47 -5.90 16 5 C 0.12 2.99 7.80 137.15 1.07 4.06 16 6 C 0.61 17.22 7.70 86.84 0.67 17.89 16 7 O -0.55 -19.48 16.52 -3.82 -0.06 -19.54 16 8 N -0.58 -13.78 2.97 -821.27 -2.44 -16.22 16 9 C 0.08 1.44 6.14 86.51 0.53 1.97 16 10 C -0.13 -2.11 6.10 30.82 0.19 -1.92 16 11 C -0.11 -2.32 5.02 30.62 0.15 -2.17 16 12 C -0.07 -1.93 1.84 -10.71 -0.02 -1.95 16 13 H 0.06 1.78 8.13 -2.39 -0.02 1.76 16 14 C -0.07 -2.46 2.56 -9.40 -0.02 -2.49 16 15 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 16 C -0.13 -4.94 5.55 31.80 0.18 -4.77 16 17 C 0.18 9.66 5.38 86.75 0.47 10.12 16 18 N -0.63 -33.64 3.39 -691.89 -2.35 -35.99 16 19 C -0.24 -13.95 10.28 84.03 0.86 -13.08 16 20 H 0.08 4.57 7.83 -2.91 -0.02 4.55 16 21 C -0.07 -4.29 5.49 84.86 0.47 -3.82 16 22 N -0.95 -59.81 10.31 21.65 0.22 -59.58 16 23 Si 0.98 47.07 29.55 68.60 2.03 49.09 16 24 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 25 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 26 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 27 C 0.14 5.77 5.81 86.85 0.50 6.27 16 28 C 0.12 2.99 5.44 86.36 0.47 3.46 16 29 N -0.27 -5.92 12.17 -52.32 -0.64 -6.56 16 30 H 0.13 -0.44 8.14 -2.39 -0.02 -0.46 16 31 H 0.13 -0.22 8.14 -2.39 -0.02 -0.24 16 32 H 0.15 -0.69 8.14 -2.39 -0.02 -0.71 16 33 H 0.09 1.35 8.14 -2.39 -0.02 1.34 16 34 H 0.12 2.24 4.16 -21.59 -0.09 2.15 16 35 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.07 1.48 7.33 -2.39 -0.02 1.46 16 38 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.06 2.26 8.04 -2.39 -0.02 2.24 16 40 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 41 H 0.01 0.60 7.38 -2.38 -0.02 0.58 16 42 H 0.00 -0.09 7.50 -2.39 -0.02 -0.11 16 43 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 44 H 0.05 1.83 8.03 -2.39 -0.02 1.82 16 45 H 0.02 0.68 8.03 -2.39 -0.02 0.66 16 46 H 0.08 2.32 6.46 -2.39 -0.02 2.31 16 47 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 Total: -1.00 -81.38 372.26 3.77 -77.60 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: 0.90 Total: 5.06 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: 7.00 Total: 15.11 kcal Atomic # 7 Polarization: -121.24 SS G_CDS: -6.09 Total: -127.33 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.06 Total: -19.54 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.09 kcal Total: -81.38 3.77 -77.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961222744.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.053 kcal (2) G-P(sol) polarization free energy of solvation -81.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds