Wall clock time and date at job start Tue Mar 31 2020 18:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34769 * 120.00158 * 2 1 4 4 O 1.21277 * 120.00351 * 180.02562 * 3 2 1 5 5 C 1.50708 * 120.00157 * 0.02562 * 3 2 1 6 6 C 1.50692 * 109.47499 * 180.02562 * 5 3 2 7 7 C 1.38252 * 119.97482 * 269.72971 * 6 5 3 8 8 C 1.38191 * 120.02503 * 180.28148 * 7 6 5 9 9 C 1.38451 * 119.97732 * 0.02562 * 8 7 6 10 10 F 1.35105 * 120.02755 * 179.97438 * 9 8 7 11 11 C 1.38455 * 119.94865 * 359.97438 * 9 8 7 12 12 C 1.38201 * 119.97608 * 0.02562 * 11 9 8 13 13 C 1.46505 * 119.99654 * 180.02562 * 2 1 3 14 14 C 1.53005 * 109.46744 * 125.82071 * 13 2 1 15 15 C 1.52999 * 109.47361 * 300.00047 * 14 13 2 16 16 C 1.53004 * 109.46898 * 300.00173 * 15 14 13 17 17 N 1.46499 * 109.46682 * 180.02562 * 16 15 14 18 18 C 1.36938 * 119.99932 * 85.00329 * 17 16 15 19 19 H 1.07997 * 120.00406 * 359.97438 * 18 17 16 20 20 C 1.38817 * 119.99626 * 179.97438 * 18 17 16 21 21 N 1.31618 * 120.00073 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99869 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47235 * 89.99745 * 22 20 18 24 24 H 1.48501 * 109.46960 * 210.00047 * 22 20 18 25 25 H 1.48499 * 109.46817 * 329.99719 * 22 20 18 26 26 C 1.52995 * 109.47326 * 59.99893 * 16 15 14 27 27 C 1.52993 * 109.47386 * 5.82385 * 13 2 1 28 28 H 1.08992 * 109.47495 * 84.07921 * 1 2 3 29 29 H 1.09001 * 109.47386 * 204.08076 * 1 2 3 30 30 H 1.09002 * 109.47107 * 324.07718 * 1 2 3 31 31 H 1.09000 * 109.46558 * 59.99821 * 5 3 2 32 32 H 1.09002 * 109.47105 * 300.00392 * 5 3 2 33 33 H 1.08003 * 119.98183 * 0.25180 * 7 6 5 34 34 H 1.08004 * 120.01069 * 179.97438 * 8 7 6 35 35 H 1.08001 * 120.01589 * 179.97438 * 11 9 8 36 36 H 1.07996 * 119.99116 * 179.97438 * 12 11 9 37 37 H 1.09000 * 109.47051 * 245.81935 * 13 2 1 38 38 H 1.09009 * 109.46877 * 59.99886 * 14 13 2 39 39 H 1.08995 * 109.46750 * 179.97438 * 14 13 2 40 40 H 1.09001 * 109.47222 * 180.02562 * 15 14 13 41 41 H 1.08997 * 109.47055 * 59.99747 * 15 14 13 42 42 H 1.09006 * 109.46863 * 299.99741 * 16 15 14 43 43 H 0.96999 * 119.99917 * 264.98941 * 17 16 15 44 44 H 0.97005 * 119.99985 * 179.97438 * 21 20 18 45 45 H 1.08999 * 109.46971 * 180.02562 * 26 16 15 46 46 H 1.08997 * 109.47314 * 60.00005 * 26 16 15 47 47 H 1.08995 * 109.47161 * 180.02562 * 27 13 2 48 48 H 1.09004 * 109.47270 * 299.99976 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3646 3.6177 -0.0002 7 6 2.8101 4.1464 1.1971 8 6 3.7037 5.2006 1.1976 9 6 4.1523 5.7277 -0.0015 10 9 5.0255 6.7587 -0.0022 11 6 3.7055 5.1974 -1.1999 12 6 2.8120 4.1432 -1.1980 13 6 2.1975 -1.2688 -0.0006 14 6 3.1836 -1.2878 -1.1703 15 6 2.4169 -1.1409 -2.4862 16 6 1.4291 -2.3000 -2.6330 17 7 0.6954 -2.1596 -3.8933 18 6 1.2332 -2.6433 -5.0561 19 1 2.1983 -3.1279 -5.0442 20 6 0.5377 -2.5107 -6.2501 21 7 -0.6387 -1.9206 -6.2645 22 14 1.2715 -3.1698 -7.8365 23 1 0.8443 -4.5785 -8.0317 24 1 0.8005 -2.3466 -8.9792 25 1 2.7532 -3.1080 -7.7595 26 6 0.4430 -2.2810 -1.4633 27 6 1.2097 -2.4279 -0.1474 28 1 -0.3634 0.1060 -1.0221 29 1 -0.3634 -0.9382 0.4193 30 1 -0.3633 0.8322 0.6029 31 1 0.7591 2.5298 0.8908 32 1 0.7584 2.5303 -0.8891 33 1 2.4593 3.7356 2.1323 34 1 4.0512 5.6137 2.1330 35 1 4.0545 5.6080 -2.1359 36 1 2.4630 3.7297 -2.1326 37 1 2.7437 -1.3734 0.9369 38 1 3.8873 -0.4620 -1.0656 39 1 3.7288 -2.2316 -1.1704 40 1 3.1194 -1.1549 -3.3195 41 1 1.8719 -0.1970 -2.4857 42 1 1.9741 -3.2440 -2.6335 43 1 -0.1713 -1.7242 -3.9040 44 1 -1.1245 -1.8276 -7.0990 45 1 -0.2605 -3.1071 -1.5678 46 1 -0.1020 -1.3371 -1.4629 47 1 1.7546 -3.3718 -0.1474 48 1 0.5071 -2.4144 0.6858 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000964308245.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:49 Heat of formation + Delta-G solvation = -35.518769 kcal Electronic energy + Delta-G solvation = -29299.581037 eV Core-core repulsion = 25269.385794 eV Total energy + Delta-G solvation = -4030.195243 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.02730 -40.68693 -39.24696 -37.68664 -35.08968 -33.49535 -32.51321 -31.30176 -30.99477 -30.64886 -28.26231 -27.33265 -26.11867 -23.61169 -23.23791 -22.35392 -22.18428 -20.97822 -19.82424 -18.64045 -17.81338 -17.13256 -16.86552 -16.64433 -16.14050 -15.83398 -15.70108 -15.33416 -15.06858 -14.35217 -14.21024 -14.01502 -13.78191 -13.65047 -13.54043 -13.45106 -13.07593 -12.90355 -12.40347 -12.32798 -12.23144 -12.04089 -11.93188 -11.83116 -11.67737 -11.53806 -11.16029 -11.02778 -10.87045 -10.58894 -10.34838 -10.14128 -10.10193 -9.66776 -9.57832 -9.41989 -9.25676 -8.82954 -8.68966 -8.47601 -6.92953 -5.76209 -3.03768 0.95170 1.08811 2.68940 2.99451 3.43490 3.47542 3.49241 3.50502 4.10497 4.44273 4.51044 4.57141 4.59479 4.72352 4.91754 4.99476 5.04754 5.06327 5.08023 5.19786 5.29401 5.34629 5.41839 5.53392 5.61042 5.68214 5.72962 5.75269 5.79232 5.84145 5.90131 5.95014 5.97341 6.05243 6.06596 6.13499 6.31423 6.32835 6.45339 6.54539 6.61144 6.69683 6.72249 6.89283 7.04953 7.18299 7.45941 7.71695 8.26207 8.43192 9.54152 10.12911 10.47410 11.46695 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012484 B = 0.002932 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.338799 B = 9546.672650 C =10925.898498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.603 5.603 3 C 0.516 3.484 4 O -0.529 6.529 5 C -0.103 4.103 6 C -0.071 4.071 7 C -0.078 4.078 8 C -0.154 4.154 9 C 0.093 3.907 10 F -0.143 7.143 11 C -0.151 4.151 12 C -0.073 4.073 13 C 0.155 3.845 14 C -0.139 4.139 15 C -0.124 4.124 16 C 0.179 3.821 17 N -0.725 5.725 18 C -0.234 4.234 19 H 0.069 0.931 20 C -0.015 4.015 21 N -0.935 5.935 22 Si 0.904 3.096 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C -0.144 4.144 27 C -0.122 4.122 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.049 0.951 42 H 0.042 0.958 43 H 0.382 0.618 44 H 0.254 0.746 45 H 0.062 0.938 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.068 10.614 18.980 21.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.337 5.337 3 C 0.304 3.696 4 O -0.406 6.406 5 C -0.143 4.143 6 C -0.072 4.072 7 C -0.096 4.096 8 C -0.173 4.173 9 C 0.074 3.926 10 F -0.122 7.122 11 C -0.169 4.169 12 C -0.091 4.091 13 C 0.053 3.947 14 C -0.178 4.178 15 C -0.165 4.165 16 C 0.070 3.930 17 N -0.365 5.365 18 C -0.365 4.365 19 H 0.087 0.913 20 C -0.211 4.211 21 N -0.584 5.584 22 Si 0.735 3.265 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.182 4.182 27 C -0.160 4.160 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.120 0.880 32 H 0.124 0.876 33 H 0.147 0.853 34 H 0.151 0.849 35 H 0.153 0.847 36 H 0.151 0.849 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.215 0.785 44 H 0.064 0.936 45 H 0.081 0.919 46 H 0.096 0.904 47 H 0.095 0.905 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.838 10.543 18.826 21.763 hybrid contribution 0.185 -0.089 -1.059 1.079 sum 3.023 10.454 17.767 20.835 Atomic orbital electron populations 1.22182 0.80023 1.03265 1.02278 1.47848 1.06762 1.05793 1.73259 1.20328 0.87998 0.84763 0.76539 1.90665 1.13758 1.87100 1.49087 1.20739 0.97538 0.90597 1.05407 1.19374 0.98327 0.96184 0.93318 1.20810 0.96036 0.94897 0.97846 1.21050 1.00295 0.98930 0.97006 1.17721 0.92176 0.87925 0.94799 1.91488 1.66977 1.56274 1.97466 1.21122 0.99963 0.98691 0.97169 1.20933 0.95479 0.94487 0.98244 1.21031 0.92841 0.82212 0.98608 1.22026 0.98323 1.02734 0.94734 1.22111 0.98864 1.00401 0.95118 1.20200 0.91547 0.95468 0.85816 1.42408 1.21618 1.70310 1.02197 1.19242 1.01460 1.29980 0.85824 0.91334 1.24710 0.96965 1.01682 0.97713 1.69653 1.13857 1.48840 1.26029 0.86226 0.78301 0.78242 0.83683 1.21798 1.21820 1.20808 1.22286 0.98959 1.03034 0.93897 1.21834 0.98125 0.97736 0.98335 0.91219 0.89738 0.91917 0.87972 0.87583 0.85296 0.84905 0.84707 0.84858 0.91638 0.89842 0.91928 0.92525 0.93185 0.93994 0.78516 0.93623 0.91929 0.90446 0.90530 0.91789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.59 8.06 59.85 0.48 1.07 16 2 N -0.60 -7.08 2.28 -173.93 -0.40 -7.48 16 3 C 0.52 6.61 7.20 -10.98 -0.08 6.53 16 4 O -0.53 -8.68 13.74 5.56 0.08 -8.60 16 5 C -0.10 -0.97 4.46 -29.04 -0.13 -1.10 16 6 C -0.07 -0.76 4.37 -104.62 -0.46 -1.22 16 7 C -0.08 -0.77 9.70 -39.59 -0.38 -1.15 16 8 C -0.15 -1.56 10.03 -39.52 -0.40 -1.95 16 9 C 0.09 1.06 7.30 -39.42 -0.29 0.77 16 10 F -0.14 -1.70 17.27 2.25 0.04 -1.67 16 11 C -0.15 -1.67 10.03 -39.52 -0.40 -2.07 16 12 C -0.07 -0.82 9.70 -39.59 -0.38 -1.21 16 13 C 0.16 1.99 3.05 -67.93 -0.21 1.78 16 14 C -0.14 -2.16 5.14 -26.73 -0.14 -2.30 16 15 C -0.12 -2.29 5.34 -26.73 -0.14 -2.43 16 16 C 0.18 3.45 2.77 -67.93 -0.19 3.26 16 17 N -0.73 -17.76 5.12 -53.42 -0.27 -18.03 16 18 C -0.23 -6.45 9.93 -15.06 -0.15 -6.60 16 19 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 20 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 21 N -0.93 -27.90 13.06 55.49 0.72 -27.18 16 22 Si 0.90 22.45 29.55 -169.99 -5.02 17.42 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 26 C -0.14 -2.14 4.84 -26.73 -0.13 -2.27 16 27 C -0.12 -1.43 4.90 -26.73 -0.13 -1.56 16 28 H 0.07 0.72 6.49 -51.93 -0.34 0.38 16 29 H 0.08 0.69 5.26 -51.93 -0.27 0.42 16 30 H 0.06 0.40 6.69 -51.93 -0.35 0.05 16 31 H 0.10 0.68 7.36 -51.93 -0.38 0.29 16 32 H 0.11 0.90 8.05 -51.93 -0.42 0.48 16 33 H 0.13 0.99 8.06 -52.48 -0.42 0.56 16 34 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 35 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.08 1.44 5.76 -51.92 -0.30 1.14 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.05 0.95 7.46 -51.93 -0.39 0.56 16 42 H 0.04 0.85 8.08 -51.93 -0.42 0.43 16 43 H 0.38 9.84 7.80 -40.82 -0.32 9.53 16 44 H 0.25 7.36 8.31 -40.82 -0.34 7.03 16 45 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.08 1.09 3.95 -51.93 -0.20 0.89 16 47 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.06 0.61 6.67 -51.93 -0.35 0.26 16 LS Contribution 377.31 15.07 5.69 5.69 Total: -1.00 -32.87 377.31 -9.47 -42.33 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -7.08 Total: 8.48 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -3.21 Total: -10.97 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: 0.05 Total: -52.69 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.08 Total: -8.60 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.87 -9.47 -42.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964308245.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.816 kcal (2) G-P(sol) polarization free energy of solvation -32.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds