Wall clock time and date at job start Tue Mar 31 2020 18:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34769 * 120.00158 * 2 1 4 4 O 1.21277 * 120.00351 * 180.02562 * 3 2 1 5 5 C 1.50708 * 120.00157 * 0.02562 * 3 2 1 6 6 C 1.50692 * 109.47499 * 180.02562 * 5 3 2 7 7 C 1.38252 * 119.97482 * 269.72971 * 6 5 3 8 8 C 1.38191 * 120.02503 * 180.28148 * 7 6 5 9 9 C 1.38451 * 119.97732 * 0.02562 * 8 7 6 10 10 F 1.35105 * 120.02755 * 179.97438 * 9 8 7 11 11 C 1.38455 * 119.94865 * 359.97438 * 9 8 7 12 12 C 1.38201 * 119.97608 * 0.02562 * 11 9 8 13 13 C 1.46505 * 119.99654 * 180.02562 * 2 1 3 14 14 C 1.53005 * 109.46744 * 125.82071 * 13 2 1 15 15 C 1.52999 * 109.47361 * 300.00047 * 14 13 2 16 16 C 1.53004 * 109.46898 * 300.00173 * 15 14 13 17 17 N 1.46499 * 109.46682 * 180.02562 * 16 15 14 18 18 C 1.36938 * 119.99932 * 85.00329 * 17 16 15 19 19 H 1.07997 * 120.00406 * 359.97438 * 18 17 16 20 20 C 1.38817 * 119.99626 * 179.97438 * 18 17 16 21 21 N 1.31618 * 120.00073 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99869 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47235 * 89.99745 * 22 20 18 24 24 H 1.48501 * 109.46960 * 210.00047 * 22 20 18 25 25 H 1.48499 * 109.46817 * 329.99719 * 22 20 18 26 26 C 1.52995 * 109.47326 * 59.99893 * 16 15 14 27 27 C 1.52993 * 109.47386 * 5.82385 * 13 2 1 28 28 H 1.08992 * 109.47495 * 84.07921 * 1 2 3 29 29 H 1.09001 * 109.47386 * 204.08076 * 1 2 3 30 30 H 1.09002 * 109.47107 * 324.07718 * 1 2 3 31 31 H 1.09000 * 109.46558 * 59.99821 * 5 3 2 32 32 H 1.09002 * 109.47105 * 300.00392 * 5 3 2 33 33 H 1.08003 * 119.98183 * 0.25180 * 7 6 5 34 34 H 1.08004 * 120.01069 * 179.97438 * 8 7 6 35 35 H 1.08001 * 120.01589 * 179.97438 * 11 9 8 36 36 H 1.07996 * 119.99116 * 179.97438 * 12 11 9 37 37 H 1.09000 * 109.47051 * 245.81935 * 13 2 1 38 38 H 1.09009 * 109.46877 * 59.99886 * 14 13 2 39 39 H 1.08995 * 109.46750 * 179.97438 * 14 13 2 40 40 H 1.09001 * 109.47222 * 180.02562 * 15 14 13 41 41 H 1.08997 * 109.47055 * 59.99747 * 15 14 13 42 42 H 1.09006 * 109.46863 * 299.99741 * 16 15 14 43 43 H 0.96999 * 119.99917 * 264.98941 * 17 16 15 44 44 H 0.97005 * 119.99985 * 179.97438 * 21 20 18 45 45 H 1.08999 * 109.46971 * 180.02562 * 26 16 15 46 46 H 1.08997 * 109.47314 * 60.00005 * 26 16 15 47 47 H 1.08995 * 109.47161 * 180.02562 * 27 13 2 48 48 H 1.09004 * 109.47270 * 299.99976 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3646 3.6177 -0.0002 7 6 2.8101 4.1464 1.1971 8 6 3.7037 5.2006 1.1976 9 6 4.1523 5.7277 -0.0015 10 9 5.0255 6.7587 -0.0022 11 6 3.7055 5.1974 -1.1999 12 6 2.8120 4.1432 -1.1980 13 6 2.1975 -1.2688 -0.0006 14 6 3.1836 -1.2878 -1.1703 15 6 2.4169 -1.1409 -2.4862 16 6 1.4291 -2.3000 -2.6330 17 7 0.6954 -2.1596 -3.8933 18 6 1.2332 -2.6433 -5.0561 19 1 2.1983 -3.1279 -5.0442 20 6 0.5377 -2.5107 -6.2501 21 7 -0.6387 -1.9206 -6.2645 22 14 1.2715 -3.1698 -7.8365 23 1 0.8443 -4.5785 -8.0317 24 1 0.8005 -2.3466 -8.9792 25 1 2.7532 -3.1080 -7.7595 26 6 0.4430 -2.2810 -1.4633 27 6 1.2097 -2.4279 -0.1474 28 1 -0.3634 0.1060 -1.0221 29 1 -0.3634 -0.9382 0.4193 30 1 -0.3633 0.8322 0.6029 31 1 0.7591 2.5298 0.8908 32 1 0.7584 2.5303 -0.8891 33 1 2.4593 3.7356 2.1323 34 1 4.0512 5.6137 2.1330 35 1 4.0545 5.6080 -2.1359 36 1 2.4630 3.7297 -2.1326 37 1 2.7437 -1.3734 0.9369 38 1 3.8873 -0.4620 -1.0656 39 1 3.7288 -2.2316 -1.1704 40 1 3.1194 -1.1549 -3.3195 41 1 1.8719 -0.1970 -2.4857 42 1 1.9741 -3.2440 -2.6335 43 1 -0.1713 -1.7242 -3.9040 44 1 -1.1245 -1.8276 -7.0990 45 1 -0.2605 -3.1071 -1.5678 46 1 -0.1020 -1.3371 -1.4629 47 1 1.7546 -3.3718 -0.1474 48 1 0.5071 -2.4144 0.6858 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000964308245.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:48 Heat of formation + Delta-G solvation = -53.746685 kcal Electronic energy + Delta-G solvation = -29300.371459 eV Core-core repulsion = 25269.385794 eV Total energy + Delta-G solvation = -4030.985665 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.90977 -41.68938 -40.13239 -38.83577 -36.53805 -34.90988 -33.61134 -32.54313 -32.08765 -31.92509 -29.72985 -28.18123 -27.21070 -25.45123 -24.02984 -23.58101 -23.23096 -22.16386 -21.07561 -19.71222 -19.07886 -18.65018 -17.80169 -17.49549 -17.22036 -16.82876 -16.75249 -16.58723 -16.15971 -15.84043 -15.31264 -15.22751 -15.01122 -14.87075 -14.51565 -14.46767 -14.30580 -13.99927 -13.73821 -13.56531 -13.18581 -13.07779 -13.01237 -12.85994 -12.82476 -12.74954 -12.69114 -12.43820 -12.15781 -12.04791 -11.93972 -11.87140 -11.42787 -11.30032 -11.05961 -10.91193 -10.41389 -10.05215 -9.52762 -9.44652 -8.96564 -7.94415 -5.20857 0.12551 0.29317 1.45210 1.45910 1.54185 1.75054 2.12206 2.55379 2.66243 3.28786 3.38492 3.64912 3.71020 3.75562 3.79996 3.92255 3.96758 4.07737 4.22326 4.31513 4.33720 4.37088 4.41434 4.45791 4.58768 4.63741 4.64387 4.66570 4.69212 4.79515 4.88868 4.96930 4.97987 5.05224 5.10544 5.15583 5.18786 5.25668 5.27028 5.30897 5.33758 5.48916 5.53603 5.57946 5.67233 5.80004 5.92863 6.29512 6.55334 7.32335 7.35285 8.13585 8.36742 9.28827 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012484 B = 0.002932 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.338799 B = 9546.672650 C =10925.898498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.602 5.602 3 C 0.509 3.491 4 O -0.573 6.573 5 C -0.097 4.097 6 C -0.079 4.079 7 C -0.078 4.078 8 C -0.155 4.155 9 C 0.073 3.927 10 F -0.151 7.151 11 C -0.162 4.162 12 C -0.091 4.091 13 C 0.157 3.843 14 C -0.132 4.132 15 C -0.110 4.110 16 C 0.175 3.825 17 N -0.735 5.735 18 C -0.236 4.236 19 H 0.066 0.934 20 C -0.073 4.073 21 N -0.966 5.966 22 Si 0.965 3.035 23 H -0.286 1.286 24 H -0.295 1.295 25 H -0.276 1.276 26 C -0.135 4.135 27 C -0.111 4.111 28 H 0.055 0.945 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.140 0.860 32 H 0.114 0.886 33 H 0.156 0.844 34 H 0.154 0.846 35 H 0.141 0.859 36 H 0.131 0.869 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.019 0.981 41 H 0.040 0.960 42 H 0.030 0.970 43 H 0.373 0.627 44 H 0.250 0.750 45 H 0.058 0.942 46 H 0.088 0.912 47 H 0.082 0.918 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.157 10.228 21.449 23.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.335 5.335 3 C 0.299 3.701 4 O -0.453 6.453 5 C -0.136 4.136 6 C -0.080 4.080 7 C -0.096 4.096 8 C -0.173 4.173 9 C 0.054 3.946 10 F -0.129 7.129 11 C -0.181 4.181 12 C -0.109 4.109 13 C 0.055 3.945 14 C -0.171 4.171 15 C -0.150 4.150 16 C 0.067 3.933 17 N -0.375 5.375 18 C -0.368 4.368 19 H 0.084 0.916 20 C -0.266 4.266 21 N -0.617 5.617 22 Si 0.794 3.206 23 H -0.213 1.213 24 H -0.221 1.221 25 H -0.201 1.201 26 C -0.173 4.173 27 C -0.149 4.149 28 H 0.073 0.927 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.158 0.842 32 H 0.133 0.867 33 H 0.174 0.826 34 H 0.172 0.828 35 H 0.159 0.841 36 H 0.149 0.851 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.037 0.963 41 H 0.059 0.941 42 H 0.048 0.952 43 H 0.205 0.795 44 H 0.059 0.941 45 H 0.077 0.923 46 H 0.106 0.894 47 H 0.100 0.900 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.929 10.142 21.330 23.697 hybrid contribution 0.515 0.035 -1.803 1.875 sum 2.444 10.177 19.527 22.156 Atomic orbital electron populations 1.22387 0.78056 1.05674 1.02253 1.47941 1.07958 1.05134 1.72492 1.20919 0.87705 0.85941 0.75574 1.90652 1.15726 1.87776 1.51106 1.20791 0.97198 0.88040 1.07588 1.19623 0.98532 0.96473 0.93363 1.21145 0.95441 0.94420 0.98619 1.21355 0.99891 0.98770 0.97314 1.17965 0.92779 0.88332 0.95558 1.91464 1.67301 1.56639 1.97532 1.21272 1.00204 0.98953 0.97662 1.21074 0.96076 0.94952 0.98826 1.20965 0.92741 0.83372 0.97462 1.21917 0.98562 1.02270 0.94308 1.21879 0.97938 0.99528 0.95652 1.20431 0.92404 0.94844 0.85650 1.42594 1.21577 1.70046 1.03252 1.19539 1.01166 1.28952 0.87174 0.91612 1.25435 0.97644 1.02830 1.00647 1.69785 1.15051 1.50502 1.26373 0.85265 0.77795 0.77560 0.79936 1.21286 1.22115 1.20130 1.22211 0.98009 1.03598 0.93486 1.21788 0.98215 0.97405 0.97453 0.92670 0.88298 0.88390 0.84232 0.86746 0.82594 0.82846 0.84150 0.85069 0.90380 0.91578 0.91436 0.96254 0.94105 0.95212 0.79489 0.94078 0.92291 0.89371 0.89968 0.88042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.82 8.06 127.77 1.03 1.85 16 2 N -0.60 -12.53 2.28 -822.59 -1.87 -14.40 16 3 C 0.51 12.06 7.20 87.66 0.63 12.69 16 4 O -0.57 -18.39 13.74 -3.02 -0.04 -18.44 16 5 C -0.10 -1.57 4.46 29.10 0.13 -1.44 16 6 C -0.08 -1.58 4.37 -19.86 -0.09 -1.67 16 7 C -0.08 -1.37 9.70 22.26 0.22 -1.15 16 8 C -0.15 -2.91 10.03 22.31 0.22 -2.69 16 9 C 0.07 1.65 7.30 22.37 0.16 1.81 16 10 F -0.15 -3.60 17.27 44.97 0.78 -2.83 16 11 C -0.16 -3.68 10.03 22.31 0.22 -3.45 16 12 C -0.09 -2.05 9.70 22.26 0.22 -1.84 16 13 C 0.16 3.64 3.05 44.99 0.14 3.78 16 14 C -0.13 -4.03 5.14 30.60 0.16 -3.88 16 15 C -0.11 -4.12 5.34 30.60 0.16 -3.95 16 16 C 0.17 6.73 2.77 44.99 0.12 6.86 16 17 N -0.74 -36.58 5.12 -322.93 -1.65 -38.24 16 18 C -0.24 -13.25 9.93 84.03 0.83 -12.42 16 19 H 0.07 3.65 7.83 -2.91 -0.02 3.62 16 20 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 21 N -0.97 -58.52 13.06 21.65 0.28 -58.24 16 22 Si 0.96 46.69 29.55 68.60 2.03 48.72 16 23 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 24 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 25 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 26 C -0.14 -3.77 4.84 30.59 0.15 -3.62 16 27 C -0.11 -2.22 4.90 30.59 0.15 -2.07 16 28 H 0.05 0.99 6.49 -2.39 -0.02 0.97 16 29 H 0.10 1.14 5.26 -2.39 -0.01 1.13 16 30 H 0.10 0.74 6.69 -2.39 -0.02 0.72 16 31 H 0.14 1.18 7.36 -2.39 -0.02 1.17 16 32 H 0.11 1.68 8.05 -2.39 -0.02 1.67 16 33 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 34 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 35 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 36 H 0.13 2.87 8.06 -2.91 -0.02 2.85 16 37 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.07 2.31 5.76 -2.38 -0.01 2.29 16 39 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.04 1.58 7.46 -2.39 -0.02 1.56 16 42 H 0.03 1.22 8.08 -2.38 -0.02 1.20 16 43 H 0.37 19.58 7.80 -92.71 -0.72 18.85 16 44 H 0.25 14.74 8.31 -92.70 -0.77 13.96 16 45 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.09 2.30 3.95 -2.39 -0.01 2.29 16 47 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 48 H 0.10 1.39 6.67 -2.38 -0.02 1.38 16 Total: -1.00 -73.56 377.31 4.70 -68.85 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: 0.26 Total: 29.49 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: 4.93 Total: -14.93 kcal Atomic # 7 Polarization: -107.63 SS G_CDS: -3.25 Total: -110.87 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.04 Total: -18.44 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.78 Total: -2.83 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -73.56 4.70 -68.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964308245.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.106 kcal (2) G-P(sol) polarization free energy of solvation -73.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds