Wall clock time and date at job start Tue Mar 31 2020 18:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34778 * 119.99882 * 2 1 4 4 O 1.21283 * 119.99891 * 179.72396 * 3 2 1 5 5 C 1.50693 * 120.00106 * 359.71484 * 3 2 1 6 6 C 1.50709 * 109.47077 * 180.02562 * 5 3 2 7 7 C 1.38272 * 119.98428 * 269.72489 * 6 5 3 8 8 C 1.38219 * 120.04813 * 179.72645 * 7 6 5 9 9 C 1.38220 * 120.02680 * 0.54781 * 8 7 6 10 10 C 1.38443 * 119.97490 * 359.72905 * 9 8 7 11 11 F 1.35092 * 120.03015 * 180.02562 * 10 9 8 12 12 C 1.38172 * 119.98738 * 90.00510 * 6 5 3 13 13 C 1.46503 * 120.00186 * 179.71796 * 2 1 3 14 14 C 1.52988 * 109.47137 * 125.96825 * 13 2 1 15 15 C 1.53002 * 109.47475 * 299.99890 * 14 13 2 16 16 C 1.52998 * 109.47253 * 300.00392 * 15 14 13 17 17 N 1.46497 * 109.47184 * 179.97438 * 16 15 14 18 18 C 1.36937 * 119.99982 * 85.00144 * 17 16 15 19 19 H 1.07996 * 119.99674 * 359.97438 * 18 17 16 20 20 C 1.38810 * 119.99805 * 180.02562 * 18 17 16 21 21 N 1.31616 * 120.00264 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99753 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46966 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47191 * 119.99496 * 22 20 18 25 25 H 1.48493 * 109.46795 * 239.99560 * 22 20 18 26 26 C 1.53004 * 109.47145 * 59.99760 * 16 15 14 27 27 C 1.53003 * 109.46628 * 5.96423 * 13 2 1 28 28 H 1.09004 * 109.46951 * 84.11735 * 1 2 3 29 29 H 1.08994 * 109.47452 * 204.12040 * 1 2 3 30 30 H 1.09003 * 109.46877 * 324.12543 * 1 2 3 31 31 H 1.09000 * 109.47500 * 300.00513 * 5 3 2 32 32 H 1.08996 * 109.47065 * 60.00989 * 5 3 2 33 33 H 1.07995 * 119.97389 * 359.97438 * 7 6 5 34 34 H 1.08002 * 119.98937 * 180.27821 * 8 7 6 35 35 H 1.08001 * 120.01497 * 179.74890 * 9 8 7 36 36 H 1.07997 * 120.01351 * 359.97438 * 12 6 5 37 37 H 1.08998 * 109.46940 * 245.97192 * 13 2 1 38 38 H 1.09000 * 109.47655 * 60.00273 * 14 13 2 39 39 H 1.09002 * 109.47496 * 180.02562 * 14 13 2 40 40 H 1.08994 * 109.47554 * 180.02562 * 15 14 13 41 41 H 1.09003 * 109.46401 * 60.00258 * 15 14 13 42 42 H 1.08999 * 109.47154 * 299.99802 * 16 15 14 43 43 H 0.96999 * 120.00252 * 265.00066 * 17 16 15 44 44 H 0.97003 * 119.99642 * 180.02562 * 21 20 18 45 45 H 1.09001 * 109.47506 * 180.02562 * 26 16 15 46 46 H 1.09003 * 109.47384 * 59.99598 * 26 16 15 47 47 H 1.09002 * 109.46623 * 179.97438 * 27 13 2 48 48 H 1.08994 * 109.47541 * 300.00058 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0051 5 6 1.3854 2.4723 -0.0065 6 6 2.3648 3.6178 -0.0058 7 6 2.8047 4.1500 1.1922 8 6 3.7073 5.1968 1.1945 9 6 4.1623 5.7203 -0.0011 10 6 3.7181 5.1920 -1.2012 11 9 4.1625 5.7025 -2.3703 12 6 2.8181 4.1395 -1.2022 13 6 2.1975 -1.2687 0.0062 14 6 3.1862 -1.2925 -1.1610 15 6 2.4225 -1.1511 -2.4793 16 6 1.4350 -2.3108 -2.6236 17 7 0.7034 -2.1750 -3.8855 18 6 1.2431 -2.6628 -5.0457 19 1 2.2082 -3.1471 -5.0304 20 6 0.5500 -2.5337 -6.2415 21 7 -0.6260 -1.9429 -6.2601 22 14 1.2859 -3.1997 -7.8241 23 1 2.6067 -3.8141 -7.5356 24 1 0.3779 -4.2242 -8.3994 25 1 1.4583 -2.0896 -8.7952 26 6 0.4462 -2.2869 -1.4562 27 6 1.2100 -2.4284 -0.1379 28 1 -0.3633 0.1053 -1.0223 29 1 -0.3634 -0.9379 0.4199 30 1 -0.3633 0.8328 0.6022 31 1 0.7625 2.5278 -0.8992 32 1 0.7551 2.5323 0.8807 33 1 2.4460 3.7448 2.1267 34 1 4.0537 5.6089 2.1308 35 1 4.8644 6.5410 0.0009 36 1 2.4712 3.7263 -2.1377 37 1 2.7416 -1.3695 0.9454 38 1 3.8897 -0.4663 -1.0583 39 1 3.7309 -2.2366 -1.1567 40 1 3.1268 -1.1685 -3.3109 41 1 1.8775 -0.2071 -2.4839 42 1 1.9800 -3.2547 -2.6189 43 1 -0.1633 -1.7397 -3.8993 44 1 -1.1104 -1.8531 -7.0957 45 1 -0.2570 -3.1134 -1.5587 46 1 -0.0987 -1.3429 -1.4608 47 1 1.7551 -3.3724 -0.1338 48 1 0.5057 -2.4115 0.6937 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000964325978.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:58 Heat of formation + Delta-G solvation = -35.335815 kcal Electronic energy + Delta-G solvation = -29439.008251 eV Core-core repulsion = 25408.820941 eV Total energy + Delta-G solvation = -4030.187310 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -48.96113 -40.68797 -39.23785 -37.69729 -35.08999 -33.55423 -32.72974 -31.04268 -30.69984 -30.63495 -28.39183 -27.58821 -26.15843 -23.63690 -22.92436 -22.43370 -22.21085 -21.00152 -19.83876 -18.65163 -17.42157 -17.08383 -16.87998 -16.61995 -16.32050 -15.90660 -15.67495 -15.58842 -15.12719 -14.39288 -14.16775 -14.01134 -13.75208 -13.57964 -13.44245 -13.30284 -13.07679 -12.88068 -12.38006 -12.28766 -12.19785 -12.13497 -11.94002 -11.79759 -11.71780 -11.54145 -11.20575 -11.02102 -10.87293 -10.58198 -10.34074 -10.12199 -10.08693 -9.66645 -9.57397 -9.45617 -9.08238 -8.83033 -8.78570 -8.47874 -6.91915 -5.75301 -3.02844 0.98105 1.06371 2.68017 2.98962 3.44168 3.47593 3.50448 3.52129 4.07829 4.40368 4.53527 4.57827 4.60372 4.84172 4.96137 4.97897 5.03499 5.05883 5.07677 5.20198 5.23738 5.29946 5.39652 5.54319 5.60713 5.65209 5.69570 5.75791 5.81412 5.88429 5.90433 5.96470 5.97846 6.06073 6.10068 6.14007 6.28956 6.32139 6.45698 6.54801 6.61685 6.70311 6.73600 6.89870 7.05602 7.19174 7.45183 7.73221 8.25178 8.44088 9.55150 10.13842 10.48286 11.47674 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011499 B = 0.003205 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.459873 B = 8734.575191 C =10333.302901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.602 5.602 3 C 0.517 3.483 4 O -0.529 6.529 5 C -0.105 4.105 6 C -0.032 4.032 7 C -0.117 4.117 8 C -0.091 4.091 9 C -0.158 4.158 10 C 0.100 3.900 11 F -0.140 7.140 12 C -0.137 4.137 13 C 0.156 3.844 14 C -0.139 4.139 15 C -0.125 4.125 16 C 0.180 3.820 17 N -0.725 5.725 18 C -0.233 4.233 19 H 0.069 0.931 20 C -0.015 4.015 21 N -0.934 5.934 22 Si 0.904 3.096 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.144 4.144 27 C -0.122 4.122 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.126 0.874 34 H 0.131 0.869 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.049 0.951 42 H 0.042 0.958 43 H 0.382 0.618 44 H 0.253 0.747 45 H 0.062 0.938 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.542 11.203 20.337 23.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.336 5.336 3 C 0.305 3.695 4 O -0.406 6.406 5 C -0.145 4.145 6 C -0.033 4.033 7 C -0.136 4.136 8 C -0.109 4.109 9 C -0.176 4.176 10 C 0.081 3.919 11 F -0.119 7.119 12 C -0.156 4.156 13 C 0.053 3.947 14 C -0.178 4.178 15 C -0.165 4.165 16 C 0.070 3.930 17 N -0.365 5.365 18 C -0.365 4.365 19 H 0.087 0.913 20 C -0.211 4.211 21 N -0.583 5.583 22 Si 0.735 3.265 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.182 4.182 27 C -0.160 4.160 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.144 0.856 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.153 0.847 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.215 0.785 44 H 0.063 0.937 45 H 0.081 0.919 46 H 0.095 0.905 47 H 0.095 0.905 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.298 11.097 20.141 23.231 hybrid contribution 0.095 -0.163 -1.311 1.325 sum 3.393 10.935 18.829 22.037 Atomic orbital electron populations 1.22187 0.79998 1.03283 1.02307 1.47839 1.06775 1.05770 1.73239 1.20268 0.87973 0.84719 0.76588 1.90670 1.13725 1.87092 1.49077 1.20772 0.97561 0.90600 1.05571 1.19130 0.96663 0.94947 0.92562 1.21020 0.98158 0.96846 0.97533 1.20924 0.96493 0.96094 0.97431 1.21121 1.02743 1.02382 0.91398 1.17655 0.97339 0.95553 0.81371 1.91505 1.87953 1.86109 1.46315 1.21045 0.98518 0.96529 0.99524 1.21032 0.92840 0.82176 0.98625 1.22021 0.98308 1.02726 0.94749 1.22116 0.98900 1.00412 0.95113 1.20199 0.91547 0.95463 0.85812 1.42417 1.21632 1.70230 1.02267 1.19288 1.01465 1.29828 0.85873 0.91274 1.24711 0.96975 1.01690 0.97713 1.69663 1.13931 1.48924 1.25829 0.86157 0.78145 0.78132 0.84048 1.20593 1.21936 1.21925 1.22287 0.98969 1.03027 0.93885 1.21838 0.98128 0.97728 0.98334 0.91212 0.89691 0.91914 0.87497 0.87719 0.85600 0.85099 0.84950 0.84655 0.91612 0.89869 0.91895 0.92513 0.93201 0.93969 0.78514 0.93675 0.91913 0.90472 0.90509 0.91769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.59 8.06 59.85 0.48 1.08 16 2 N -0.60 -7.20 2.27 -173.94 -0.40 -7.59 16 3 C 0.52 6.76 7.21 -10.99 -0.08 6.68 16 4 O -0.53 -8.81 13.75 5.56 0.08 -8.74 16 5 C -0.11 -1.03 4.46 -29.03 -0.13 -1.16 16 6 C -0.03 -0.36 4.37 -104.63 -0.46 -0.82 16 7 C -0.12 -1.13 9.70 -39.58 -0.38 -1.52 16 8 C -0.09 -0.82 10.04 -39.59 -0.40 -1.22 16 9 C -0.16 -1.61 10.03 -39.51 -0.40 -2.00 16 10 C 0.10 1.24 7.30 -39.42 -0.29 0.95 16 11 F -0.14 -1.89 17.27 2.25 0.04 -1.85 16 12 C -0.14 -1.71 9.68 -39.52 -0.38 -2.09 16 13 C 0.16 2.01 3.04 -67.93 -0.21 1.81 16 14 C -0.14 -2.19 5.15 -26.74 -0.14 -2.33 16 15 C -0.12 -2.34 5.34 -26.73 -0.14 -2.48 16 16 C 0.18 3.50 2.77 -67.93 -0.19 3.31 16 17 N -0.73 -17.94 5.12 -53.43 -0.27 -18.22 16 18 C -0.23 -6.50 9.93 -15.06 -0.15 -6.65 16 19 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 20 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 21 N -0.93 -28.13 13.06 55.49 0.72 -27.40 16 22 Si 0.90 22.65 29.55 -169.99 -5.02 17.63 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 26 C -0.14 -2.16 4.84 -26.72 -0.13 -2.29 16 27 C -0.12 -1.45 4.91 -26.72 -0.13 -1.58 16 28 H 0.07 0.73 6.50 -51.93 -0.34 0.39 16 29 H 0.08 0.70 5.25 -51.93 -0.27 0.43 16 30 H 0.06 0.40 6.69 -51.93 -0.35 0.06 16 31 H 0.11 0.96 8.05 -51.93 -0.42 0.54 16 32 H 0.10 0.70 7.35 -51.93 -0.38 0.32 16 33 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 34 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.08 1.45 5.77 -51.93 -0.30 1.15 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.05 0.97 7.47 -51.93 -0.39 0.58 16 42 H 0.04 0.87 8.08 -51.93 -0.42 0.45 16 43 H 0.38 9.94 7.80 -40.82 -0.32 9.63 16 44 H 0.25 7.39 8.31 -40.82 -0.34 7.06 16 45 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.08 1.10 3.96 -51.93 -0.21 0.90 16 47 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.06 0.62 6.67 -51.93 -0.35 0.27 16 LS Contribution 377.35 15.07 5.69 5.69 Total: -1.00 -33.40 377.35 -9.47 -42.86 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -7.09 Total: 8.46 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -3.21 Total: -10.84 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: 0.06 Total: -53.21 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.08 Total: -8.74 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.40 -9.47 -42.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964325978.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.526 kcal (2) G-P(sol) polarization free energy of solvation -33.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds