Wall clock time and date at job start Tue Mar 31 2020 18:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34778 * 119.99882 * 2 1 4 4 O 1.21283 * 119.99891 * 179.72396 * 3 2 1 5 5 C 1.50693 * 120.00106 * 359.71484 * 3 2 1 6 6 C 1.50709 * 109.47077 * 180.02562 * 5 3 2 7 7 C 1.38272 * 119.98428 * 269.72489 * 6 5 3 8 8 C 1.38219 * 120.04813 * 179.72645 * 7 6 5 9 9 C 1.38220 * 120.02680 * 0.54781 * 8 7 6 10 10 C 1.38443 * 119.97490 * 359.72905 * 9 8 7 11 11 F 1.35092 * 120.03015 * 180.02562 * 10 9 8 12 12 C 1.38172 * 119.98738 * 90.00510 * 6 5 3 13 13 C 1.46503 * 120.00186 * 179.71796 * 2 1 3 14 14 C 1.52988 * 109.47137 * 125.96825 * 13 2 1 15 15 C 1.53002 * 109.47475 * 299.99890 * 14 13 2 16 16 C 1.52998 * 109.47253 * 300.00392 * 15 14 13 17 17 N 1.46497 * 109.47184 * 179.97438 * 16 15 14 18 18 C 1.36937 * 119.99982 * 85.00144 * 17 16 15 19 19 H 1.07996 * 119.99674 * 359.97438 * 18 17 16 20 20 C 1.38810 * 119.99805 * 180.02562 * 18 17 16 21 21 N 1.31616 * 120.00264 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99753 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46966 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47191 * 119.99496 * 22 20 18 25 25 H 1.48493 * 109.46795 * 239.99560 * 22 20 18 26 26 C 1.53004 * 109.47145 * 59.99760 * 16 15 14 27 27 C 1.53003 * 109.46628 * 5.96423 * 13 2 1 28 28 H 1.09004 * 109.46951 * 84.11735 * 1 2 3 29 29 H 1.08994 * 109.47452 * 204.12040 * 1 2 3 30 30 H 1.09003 * 109.46877 * 324.12543 * 1 2 3 31 31 H 1.09000 * 109.47500 * 300.00513 * 5 3 2 32 32 H 1.08996 * 109.47065 * 60.00989 * 5 3 2 33 33 H 1.07995 * 119.97389 * 359.97438 * 7 6 5 34 34 H 1.08002 * 119.98937 * 180.27821 * 8 7 6 35 35 H 1.08001 * 120.01497 * 179.74890 * 9 8 7 36 36 H 1.07997 * 120.01351 * 359.97438 * 12 6 5 37 37 H 1.08998 * 109.46940 * 245.97192 * 13 2 1 38 38 H 1.09000 * 109.47655 * 60.00273 * 14 13 2 39 39 H 1.09002 * 109.47496 * 180.02562 * 14 13 2 40 40 H 1.08994 * 109.47554 * 180.02562 * 15 14 13 41 41 H 1.09003 * 109.46401 * 60.00258 * 15 14 13 42 42 H 1.08999 * 109.47154 * 299.99802 * 16 15 14 43 43 H 0.96999 * 120.00252 * 265.00066 * 17 16 15 44 44 H 0.97003 * 119.99642 * 180.02562 * 21 20 18 45 45 H 1.09001 * 109.47506 * 180.02562 * 26 16 15 46 46 H 1.09003 * 109.47384 * 59.99598 * 26 16 15 47 47 H 1.09002 * 109.46623 * 179.97438 * 27 13 2 48 48 H 1.08994 * 109.47541 * 300.00058 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0051 5 6 1.3854 2.4723 -0.0065 6 6 2.3648 3.6178 -0.0058 7 6 2.8047 4.1500 1.1922 8 6 3.7073 5.1968 1.1945 9 6 4.1623 5.7203 -0.0011 10 6 3.7181 5.1920 -1.2012 11 9 4.1625 5.7025 -2.3703 12 6 2.8181 4.1395 -1.2022 13 6 2.1975 -1.2687 0.0062 14 6 3.1862 -1.2925 -1.1610 15 6 2.4225 -1.1511 -2.4793 16 6 1.4350 -2.3108 -2.6236 17 7 0.7034 -2.1750 -3.8855 18 6 1.2431 -2.6628 -5.0457 19 1 2.2082 -3.1471 -5.0304 20 6 0.5500 -2.5337 -6.2415 21 7 -0.6260 -1.9429 -6.2601 22 14 1.2859 -3.1997 -7.8241 23 1 2.6067 -3.8141 -7.5356 24 1 0.3779 -4.2242 -8.3994 25 1 1.4583 -2.0896 -8.7952 26 6 0.4462 -2.2869 -1.4562 27 6 1.2100 -2.4284 -0.1379 28 1 -0.3633 0.1053 -1.0223 29 1 -0.3634 -0.9379 0.4199 30 1 -0.3633 0.8328 0.6022 31 1 0.7625 2.5278 -0.8992 32 1 0.7551 2.5323 0.8807 33 1 2.4460 3.7448 2.1267 34 1 4.0537 5.6089 2.1308 35 1 4.8644 6.5410 0.0009 36 1 2.4712 3.7263 -2.1377 37 1 2.7416 -1.3695 0.9454 38 1 3.8897 -0.4663 -1.0583 39 1 3.7309 -2.2366 -1.1567 40 1 3.1268 -1.1685 -3.3109 41 1 1.8775 -0.2071 -2.4839 42 1 1.9800 -3.2547 -2.6189 43 1 -0.1633 -1.7397 -3.8993 44 1 -1.1104 -1.8531 -7.0957 45 1 -0.2570 -3.1134 -1.5587 46 1 -0.0987 -1.3429 -1.4608 47 1 1.7551 -3.3724 -0.1338 48 1 0.5057 -2.4115 0.6937 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000964325978.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:57 Heat of formation + Delta-G solvation = -54.385180 kcal Electronic energy + Delta-G solvation = -29439.834293 eV Core-core repulsion = 25408.820941 eV Total energy + Delta-G solvation = -4031.013352 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -49.93526 -41.71164 -40.12781 -38.86076 -36.56191 -34.94368 -33.82596 -32.64764 -31.94459 -31.50187 -29.81743 -28.51454 -27.26237 -25.49159 -23.76980 -23.59031 -23.32469 -22.21425 -21.11772 -19.75519 -19.09844 -18.26941 -17.83594 -17.50650 -17.14861 -17.05079 -16.78294 -16.66790 -16.55507 -15.87957 -15.34572 -15.24738 -14.99770 -14.88439 -14.57495 -14.32080 -14.17330 -14.01402 -13.74199 -13.50929 -13.20172 -13.09803 -13.01642 -12.93050 -12.85721 -12.76590 -12.66274 -12.47747 -12.12854 -12.07643 -11.98804 -11.89757 -11.45208 -11.32028 -11.07911 -10.94281 -10.46213 -9.91032 -9.62771 -9.47104 -8.98433 -7.96152 -5.22731 0.17509 0.24638 1.43258 1.44339 1.53645 1.71364 2.10445 2.53831 2.67048 3.24525 3.36877 3.60093 3.66877 3.78248 3.81800 3.90500 4.03667 4.09678 4.26265 4.28644 4.32258 4.35324 4.39436 4.44209 4.48916 4.57411 4.62334 4.64524 4.67213 4.77405 4.86890 4.91865 4.98472 5.08773 5.10099 5.16018 5.17040 5.25403 5.28826 5.31474 5.35287 5.47368 5.50247 5.56172 5.65164 5.78055 5.94845 6.27915 6.52072 7.28810 7.33554 8.11748 8.34737 9.27318 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011499 B = 0.003205 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.459873 B = 8734.575191 C =10333.302901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.602 5.602 3 C 0.510 3.490 4 O -0.572 6.572 5 C -0.100 4.100 6 C -0.044 4.044 7 C -0.116 4.116 8 C -0.087 4.087 9 C -0.160 4.160 10 C 0.069 3.931 11 F -0.156 7.156 12 C -0.162 4.162 13 C 0.158 3.842 14 C -0.132 4.132 15 C -0.111 4.111 16 C 0.175 3.825 17 N -0.736 5.736 18 C -0.236 4.236 19 H 0.066 0.934 20 C -0.074 4.074 21 N -0.966 5.966 22 Si 0.965 3.035 23 H -0.271 1.271 24 H -0.290 1.290 25 H -0.295 1.295 26 C -0.136 4.136 27 C -0.110 4.110 28 H 0.053 0.947 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.145 0.855 33 H 0.155 0.845 34 H 0.167 0.833 35 H 0.151 0.849 36 H 0.119 0.881 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.018 0.982 41 H 0.037 0.963 42 H 0.031 0.969 43 H 0.373 0.627 44 H 0.250 0.750 45 H 0.059 0.941 46 H 0.087 0.913 47 H 0.083 0.917 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.956 11.085 23.643 26.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.335 5.335 3 C 0.299 3.701 4 O -0.452 6.452 5 C -0.139 4.139 6 C -0.044 4.044 7 C -0.134 4.134 8 C -0.104 4.104 9 C -0.178 4.178 10 C 0.050 3.950 11 F -0.134 7.134 12 C -0.181 4.181 13 C 0.055 3.945 14 C -0.170 4.170 15 C -0.151 4.151 16 C 0.067 3.933 17 N -0.375 5.375 18 C -0.368 4.368 19 H 0.084 0.916 20 C -0.266 4.266 21 N -0.617 5.617 22 Si 0.795 3.205 23 H -0.196 1.196 24 H -0.217 1.217 25 H -0.223 1.223 26 C -0.173 4.173 27 C -0.148 4.148 28 H 0.071 0.929 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.128 0.872 32 H 0.163 0.837 33 H 0.172 0.828 34 H 0.184 0.816 35 H 0.169 0.831 36 H 0.137 0.863 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.037 0.963 41 H 0.056 0.944 42 H 0.049 0.951 43 H 0.205 0.795 44 H 0.059 0.941 45 H 0.078 0.922 46 H 0.105 0.895 47 H 0.102 0.898 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.712 10.963 23.481 26.056 hybrid contribution 0.329 -0.106 -2.293 2.319 sum 3.041 10.857 21.188 24.001 Atomic orbital electron populations 1.22393 0.78025 1.05775 1.02192 1.47934 1.07983 1.05122 1.72439 1.20850 0.87686 0.85910 0.75641 1.90653 1.15682 1.87776 1.51104 1.20822 0.97263 0.88195 1.07588 1.19360 0.97128 0.95406 0.92546 1.21425 0.97558 0.96498 0.97940 1.21382 0.95466 0.95373 0.98216 1.21433 1.02738 1.02699 0.90963 1.18019 0.98563 0.96562 0.81819 1.91455 1.88265 1.86397 1.47329 1.21123 0.99688 0.97459 0.99867 1.20979 0.92732 0.83311 0.97498 1.21914 0.98572 1.02285 0.94278 1.21891 0.97985 0.99483 0.95735 1.20432 0.92412 0.94807 0.85655 1.42609 1.21581 1.69956 1.03363 1.19581 1.01162 1.28818 0.87226 0.91566 1.25447 0.97665 1.02843 1.00669 1.69794 1.15147 1.50577 1.26224 0.85191 0.77784 0.77296 0.80259 1.19560 1.21667 1.22282 1.22214 0.98007 1.03573 0.93522 1.21796 0.98228 0.97401 0.97398 0.92852 0.88109 0.88345 0.87183 0.83730 0.82757 0.81575 0.83086 0.86313 0.90165 0.91722 0.91254 0.96343 0.94403 0.95057 0.79515 0.94081 0.92176 0.89506 0.89835 0.87903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.86 8.06 127.77 1.03 1.89 16 2 N -0.60 -12.98 2.27 -822.61 -1.87 -14.85 16 3 C 0.51 12.61 7.21 87.65 0.63 13.24 16 4 O -0.57 -18.94 13.75 -3.04 -0.04 -18.98 16 5 C -0.10 -1.74 4.46 29.10 0.13 -1.61 16 6 C -0.04 -0.93 4.37 -19.87 -0.09 -1.02 16 7 C -0.12 -1.93 9.70 22.27 0.22 -1.72 16 8 C -0.09 -1.33 10.04 22.26 0.22 -1.10 16 9 C -0.16 -3.10 10.03 22.31 0.22 -2.88 16 10 C 0.07 1.79 7.30 22.38 0.16 1.95 16 11 F -0.16 -4.49 17.27 44.97 0.78 -3.71 16 12 C -0.16 -4.25 9.68 22.31 0.22 -4.03 16 13 C 0.16 3.72 3.04 44.99 0.14 3.85 16 14 C -0.13 -4.13 5.15 30.59 0.16 -3.98 16 15 C -0.11 -4.28 5.34 30.59 0.16 -4.12 16 16 C 0.18 6.88 2.77 44.99 0.12 7.00 16 17 N -0.74 -37.26 5.12 -322.95 -1.65 -38.92 16 18 C -0.24 -13.42 9.93 84.03 0.83 -12.59 16 19 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 20 C -0.07 -4.32 5.50 84.86 0.47 -3.86 16 21 N -0.97 -59.34 13.06 21.65 0.28 -59.06 16 22 Si 0.96 47.36 29.55 68.60 2.03 49.39 16 23 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 24 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 25 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 26 C -0.14 -3.84 4.84 30.60 0.15 -3.70 16 27 C -0.11 -2.24 4.91 30.60 0.15 -2.09 16 28 H 0.05 1.01 6.50 -2.38 -0.02 0.99 16 29 H 0.10 1.20 5.25 -2.39 -0.01 1.19 16 30 H 0.10 0.80 6.69 -2.39 -0.02 0.78 16 31 H 0.11 1.86 8.05 -2.39 -0.02 1.84 16 32 H 0.14 1.31 7.35 -2.39 -0.02 1.29 16 33 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 34 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 35 H 0.15 2.24 8.06 -2.91 -0.02 2.21 16 36 H 0.12 3.31 8.06 -2.91 -0.02 3.28 16 37 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.06 2.32 5.77 -2.39 -0.01 2.31 16 39 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.04 1.52 7.47 -2.39 -0.02 1.51 16 42 H 0.03 1.30 8.08 -2.39 -0.02 1.28 16 43 H 0.37 19.92 7.80 -92.71 -0.72 19.20 16 44 H 0.25 14.90 8.31 -92.71 -0.77 14.12 16 45 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.09 2.33 3.96 -2.39 -0.01 2.33 16 47 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 48 H 0.10 1.42 6.67 -2.39 -0.02 1.40 16 Total: -1.00 -76.42 377.35 4.71 -71.71 By element: Atomic # 1 Polarization: 28.90 SS G_CDS: 0.26 Total: 29.15 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: 4.93 Total: -14.74 kcal Atomic # 7 Polarization: -109.58 SS G_CDS: -3.24 Total: -112.82 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.04 Total: -18.98 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 0.78 Total: -3.71 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.39 kcal Total: -76.42 4.71 -71.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964325978.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.326 kcal (2) G-P(sol) polarization free energy of solvation -76.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds