Wall clock time and date at job start Tue Mar 31 2020 19:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86803 * 119.99976 * 2 1 4 4 H 1.48491 * 109.47024 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47102 * 300.00396 * 3 2 1 6 6 H 1.48497 * 109.47002 * 60.00054 * 3 2 1 7 7 C 1.38806 * 120.00132 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00230 * 164.14936 * 7 2 1 9 9 N 1.36947 * 119.99780 * 344.14394 * 7 2 1 10 10 C 1.47166 * 121.07283 * 153.78113 * 9 7 2 11 11 C 1.53283 * 108.54721 * 128.72336 * 10 9 7 12 12 O 1.43120 * 109.22514 * 53.03426 * 11 10 9 13 13 C 1.41888 * 114.39699 * 299.11673 * 12 11 10 14 14 C 1.54372 * 110.72957 * 296.57863 * 13 12 11 15 15 C 1.54468 * 102.94967 * 276.13491 * 14 13 12 16 16 N 1.47083 * 107.29290 * 338.84257 * 15 14 13 17 17 C 1.34773 * 125.63100 * 178.91611 * 16 15 14 18 18 O 1.21284 * 120.00097 * 179.68704 * 17 16 15 19 19 C 1.50703 * 120.00171 * 359.68720 * 17 16 15 20 20 C 1.52997 * 109.47116 * 180.02562 * 19 17 16 21 21 H 1.09000 * 115.55176 * 29.28115 * 20 19 17 22 22 C 1.52994 * 117.49901 * 243.60399 * 20 19 17 23 23 C 1.52996 * 60.03584 * 252.50363 * 22 20 19 24 24 H 1.08997 * 117.49743 * 107.50253 * 23 22 20 25 25 C 1.52997 * 117.49539 * 252.52207 * 23 22 20 26 26 C 1.53009 * 117.49799 * 197.22773 * 25 23 22 27 27 C 1.53001 * 60.00157 * 252.51346 * 26 25 23 28 28 C 1.47572 * 108.73771 * 358.64525 * 16 15 14 29 29 C 1.47325 * 121.07998 * 333.76493 * 9 7 2 30 30 H 0.96997 * 119.99554 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.62082 * 248.43421 * 10 9 7 32 32 H 1.08995 * 109.63107 * 8.81311 * 10 9 7 33 33 H 1.09001 * 109.51350 * 172.96021 * 11 10 9 34 34 H 1.09008 * 109.51091 * 293.10980 * 11 10 9 35 35 H 1.09000 * 110.73017 * 34.68100 * 14 13 12 36 36 H 1.09002 * 110.72681 * 157.80796 * 14 13 12 37 37 H 1.08996 * 109.98570 * 219.35798 * 15 14 13 38 38 H 1.09003 * 109.77546 * 98.20646 * 15 14 13 39 39 H 1.09001 * 109.46929 * 60.00132 * 19 17 16 40 40 H 1.09008 * 109.46887 * 300.00306 * 19 17 16 41 41 H 1.09000 * 117.49950 * 0.02562 * 22 20 19 42 42 H 1.09002 * 117.50135 * 144.99415 * 22 20 19 43 43 H 1.08995 * 115.55637 * 342.93460 * 25 23 22 44 44 H 1.08999 * 117.49439 * 0.02562 * 26 25 23 45 45 H 1.09000 * 117.50083 * 145.01863 * 26 25 23 46 46 H 1.08997 * 117.49818 * 252.51288 * 27 26 25 47 47 H 1.09000 * 117.49819 * 107.48893 * 27 26 25 48 48 H 1.09002 * 110.37517 * 142.37873 * 28 16 15 49 49 H 1.08994 * 110.38221 * 264.61307 * 28 16 15 50 50 H 1.08997 * 109.64259 * 109.48665 * 29 9 7 51 51 H 1.09002 * 109.64100 * 348.85144 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0595 -1.2198 -0.2560 9 7 1.3647 -2.3656 0.3230 10 6 1.8354 -3.6630 -0.1880 11 6 1.9820 -4.6283 0.9936 12 8 0.7559 -4.6599 1.7312 13 6 0.3700 -3.4098 2.2805 14 6 1.4053 -2.9262 3.3185 15 6 0.9711 -3.6584 4.6075 16 7 -0.4394 -4.0400 4.4395 17 6 -1.1819 -4.7170 5.3377 18 8 -2.3421 -4.9738 5.0950 19 6 -0.5705 -5.1549 6.6437 20 6 -1.6189 -5.8984 7.4737 21 1 -2.3836 -6.4250 6.9027 22 6 -2.0369 -5.2745 8.8067 23 6 -1.1607 -6.5286 8.7913 24 1 -0.1124 -6.4136 9.0668 25 6 -1.8112 -7.8499 9.2061 26 6 -0.8831 -9.0068 9.5820 27 6 -1.6534 -9.0424 8.2605 28 6 -0.9092 -3.5535 3.1279 29 6 0.1766 -2.3593 1.1941 30 1 -0.4849 0.8401 0.0004 31 1 1.1110 -4.0613 -0.8984 32 1 2.7990 -3.5345 -0.6810 33 1 2.2088 -5.6274 0.6215 34 1 2.7890 -4.2890 1.6431 35 1 2.4127 -3.2212 3.0249 36 1 1.3439 -1.8459 3.4500 37 1 1.0759 -2.9950 5.4660 38 1 1.5820 -4.5500 4.7487 39 1 -0.2242 -4.2802 7.1942 40 1 0.2726 -5.8172 6.4462 41 1 -1.5653 -4.3342 9.0922 42 1 -3.0766 -5.3906 9.1127 43 1 -2.7509 -7.7607 9.7511 44 1 0.1908 -8.8264 9.5343 45 1 -1.2121 -9.6788 10.3747 46 1 -2.4892 -9.7378 8.1838 47 1 -1.0862 -8.8856 7.3430 48 1 -1.5855 -4.2781 2.6744 49 1 -1.4049 -2.5889 3.2362 50 1 -0.7098 -2.5986 0.6066 51 1 0.0626 -1.3763 1.6512 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972475546.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:30 Heat of formation + Delta-G solvation = -0.198196 kcal Electronic energy + Delta-G solvation = -29651.359789 eV Core-core repulsion = 25746.156466 eV Total energy + Delta-G solvation = -3905.203323 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.28328 -39.20780 -38.29878 -36.14866 -35.51685 -34.48475 -31.74522 -31.29598 -29.62273 -29.46567 -27.35795 -25.56415 -23.90304 -23.57792 -22.77937 -22.63637 -21.61364 -21.03532 -19.96847 -19.22769 -18.63514 -17.16566 -16.96293 -16.13120 -16.00802 -15.72201 -15.31822 -15.04166 -14.59085 -14.39780 -14.33866 -14.07556 -13.89694 -13.44104 -13.34947 -12.96521 -12.76896 -12.69023 -12.39634 -12.21254 -11.99444 -11.89787 -11.68310 -11.44922 -11.32701 -11.10254 -11.06588 -10.95630 -10.89803 -10.84423 -10.72770 -10.31921 -10.29603 -10.05242 -9.99369 -9.80928 -9.58530 -9.53306 -9.07400 -8.59101 -8.41797 -6.79092 -5.89086 -3.32647 2.80318 3.07097 3.29635 3.38007 3.39507 3.39700 3.75568 4.16301 4.29799 4.38285 4.53102 4.56029 4.70011 4.80437 4.87838 4.92642 5.03082 5.07411 5.22458 5.23705 5.29310 5.33400 5.38713 5.39299 5.46732 5.52472 5.58653 5.62143 5.66446 5.71415 5.80179 5.84508 5.86372 5.92548 5.97938 5.99146 6.06240 6.14293 6.22969 6.26741 6.30073 6.43902 6.49549 6.62395 6.76023 7.02670 7.40378 7.66943 7.72118 7.90652 8.27475 8.33621 9.05928 9.68751 10.26411 11.19256 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.021589 B = 0.002444 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.641958 B =11452.625793 C =11964.969363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.252 4.252 8 H 0.069 0.931 9 N -0.593 5.593 10 C 0.109 3.891 11 C 0.046 3.954 12 O -0.374 6.374 13 C 0.085 3.915 14 C -0.144 4.144 15 C 0.104 3.896 16 N -0.613 5.613 17 C 0.529 3.471 18 O -0.544 6.544 19 C -0.105 4.105 20 C -0.128 4.128 21 H 0.120 0.880 22 C -0.169 4.169 23 C -0.124 4.124 24 H 0.105 0.895 25 C -0.124 4.124 26 C -0.178 4.178 27 C -0.176 4.176 28 C 0.124 3.876 29 C 0.163 3.837 30 H 0.255 0.745 31 H 0.026 0.974 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.047 0.953 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.104 0.896 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.096 0.904 48 H 0.083 0.917 49 H 0.084 0.916 50 H 0.030 0.970 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.423 -12.469 16.885 21.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.381 4.381 8 H 0.087 0.913 9 N -0.317 5.317 10 C -0.018 4.018 11 C -0.031 4.031 12 O -0.293 6.293 13 C 0.043 3.957 14 C -0.182 4.182 15 C -0.019 4.019 16 N -0.347 5.347 17 C 0.318 3.682 18 O -0.422 6.422 19 C -0.145 4.145 20 C -0.146 4.146 21 H 0.138 0.862 22 C -0.206 4.206 23 C -0.142 4.142 24 H 0.123 0.877 25 C -0.142 4.142 26 C -0.215 4.215 27 C -0.213 4.213 28 C 0.001 3.999 29 C 0.037 3.963 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.065 0.935 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.122 0.878 44 H 0.112 0.888 45 H 0.110 0.890 46 H 0.111 0.889 47 H 0.115 0.885 48 H 0.101 0.899 49 H 0.102 0.898 50 H 0.048 0.952 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.563 -12.653 16.814 21.051 hybrid contribution 0.712 1.171 -0.140 1.378 sum 1.275 -11.481 16.674 20.285 Atomic orbital electron populations 1.70017 1.05211 1.25613 1.53896 1.25054 0.95354 0.98417 1.00804 0.86211 0.79275 0.83829 0.77399 1.20243 1.21643 1.21477 1.19204 0.92259 0.84190 1.42444 0.91310 1.44077 1.32285 1.01421 1.53879 1.21595 0.98659 0.87620 0.93897 1.23089 0.86309 0.99680 0.94066 1.87655 1.41057 1.30342 1.70232 1.22697 0.92469 0.86614 0.93873 1.23026 1.00770 1.01177 0.93256 1.22091 0.81767 0.98889 0.99138 1.48582 1.12404 1.55427 1.18250 1.20134 0.85924 0.77289 0.84829 1.90681 1.16955 1.56220 1.78341 1.21193 0.98676 1.01069 0.93576 1.22181 1.00908 1.02405 0.89110 0.86210 1.23148 1.00234 0.96375 1.00795 1.21892 0.98815 0.92108 1.01363 0.87717 1.21738 1.00216 0.88512 1.03709 1.22977 0.98167 1.01465 0.98931 1.22973 1.03073 1.00745 0.94510 1.22090 0.96116 1.00225 0.81438 1.21143 0.89344 0.96549 0.89279 0.93466 0.95569 0.91905 0.89999 0.93504 0.89569 0.89449 0.91759 0.91795 0.89017 0.88761 0.88789 0.88713 0.87783 0.88809 0.88973 0.88916 0.88508 0.89854 0.89770 0.95193 0.88413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.14 11.11 55.49 0.62 -24.53 16 2 C 0.00 0.06 4.98 -17.43 -0.09 -0.02 16 3 Si 0.90 20.76 29.58 -169.99 -5.03 15.73 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.25 -6.52 9.66 -15.06 -0.15 -6.66 16 8 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 9 N -0.59 -14.10 2.98 -172.25 -0.51 -14.61 16 10 C 0.11 2.19 6.71 -3.53 -0.02 2.17 16 11 C 0.05 0.79 6.78 37.30 0.25 1.05 16 12 O -0.37 -7.10 10.28 -35.22 -0.36 -7.46 16 13 C 0.09 1.59 0.84 -89.65 -0.08 1.52 16 14 C -0.14 -2.32 5.87 -25.24 -0.15 -2.47 16 15 C 0.10 1.37 6.50 -2.95 -0.02 1.36 16 16 N -0.61 -9.50 3.33 -170.76 -0.57 -10.07 16 17 C 0.53 8.13 7.85 -10.99 -0.09 8.04 16 18 O -0.54 -10.29 15.83 5.55 0.09 -10.21 16 19 C -0.11 -1.15 5.17 -27.88 -0.14 -1.29 16 20 C -0.13 -1.38 5.06 -90.58 -0.46 -1.84 16 21 H 0.12 1.58 7.30 -51.93 -0.38 1.20 16 22 C -0.17 -1.56 9.89 -26.74 -0.26 -1.82 16 23 C -0.12 -1.08 5.59 -90.58 -0.51 -1.59 16 24 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 25 C -0.12 -1.03 5.87 -90.61 -0.53 -1.56 16 26 C -0.18 -1.31 10.25 -26.73 -0.27 -1.58 16 27 C -0.18 -1.46 10.18 -26.73 -0.27 -1.74 16 28 C 0.12 2.19 6.08 -2.87 -0.02 2.17 16 29 C 0.16 3.71 4.06 -3.92 -0.02 3.70 16 30 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 1.19 7.96 -51.93 -0.41 0.78 16 33 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.05 0.77 6.23 -51.92 -0.32 0.44 16 35 H 0.09 1.38 6.08 -51.93 -0.32 1.06 16 36 H 0.09 1.48 7.82 -51.93 -0.41 1.07 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 0.85 7.88 -51.93 -0.41 0.44 16 40 H 0.09 0.90 8.14 -51.92 -0.42 0.48 16 41 H 0.09 0.79 8.03 -51.93 -0.42 0.37 16 42 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 48 H 0.08 1.58 8.06 -51.93 -0.42 1.16 16 49 H 0.08 1.48 8.00 -51.93 -0.42 1.07 16 50 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 51 H 0.10 2.43 5.95 -51.93 -0.31 2.12 16 LS Contribution 401.14 15.07 6.05 6.05 Total: -1.00 -30.44 401.14 -11.39 -41.83 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -8.85 Total: 3.86 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -2.82 Total: -0.58 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: -0.47 Total: -49.21 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.27 Total: -17.67 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.73 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.44 -11.39 -41.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972475546.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.630 kcal (2) G-P(sol) polarization free energy of solvation -30.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds