Wall clock time and date at job start Tue Mar 31 2020 19:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86803 * 119.99976 * 2 1 4 4 H 1.48491 * 109.47024 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47102 * 300.00396 * 3 2 1 6 6 H 1.48497 * 109.47002 * 60.00054 * 3 2 1 7 7 C 1.38806 * 120.00132 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00230 * 164.14936 * 7 2 1 9 9 N 1.36947 * 119.99780 * 344.14394 * 7 2 1 10 10 C 1.47166 * 121.07283 * 153.78113 * 9 7 2 11 11 C 1.53283 * 108.54721 * 128.72336 * 10 9 7 12 12 O 1.43120 * 109.22514 * 53.03426 * 11 10 9 13 13 C 1.41888 * 114.39699 * 299.11673 * 12 11 10 14 14 C 1.54372 * 110.72957 * 296.57863 * 13 12 11 15 15 C 1.54468 * 102.94967 * 276.13491 * 14 13 12 16 16 N 1.47083 * 107.29290 * 338.84257 * 15 14 13 17 17 C 1.34773 * 125.63100 * 178.91611 * 16 15 14 18 18 O 1.21284 * 120.00097 * 179.68704 * 17 16 15 19 19 C 1.50703 * 120.00171 * 359.68720 * 17 16 15 20 20 C 1.52997 * 109.47116 * 180.02562 * 19 17 16 21 21 H 1.09000 * 115.55176 * 29.28115 * 20 19 17 22 22 C 1.52994 * 117.49901 * 243.60399 * 20 19 17 23 23 C 1.52996 * 60.03584 * 252.50363 * 22 20 19 24 24 H 1.08997 * 117.49743 * 107.50253 * 23 22 20 25 25 C 1.52997 * 117.49539 * 252.52207 * 23 22 20 26 26 C 1.53009 * 117.49799 * 197.22773 * 25 23 22 27 27 C 1.53001 * 60.00157 * 252.51346 * 26 25 23 28 28 C 1.47572 * 108.73771 * 358.64525 * 16 15 14 29 29 C 1.47325 * 121.07998 * 333.76493 * 9 7 2 30 30 H 0.96997 * 119.99554 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.62082 * 248.43421 * 10 9 7 32 32 H 1.08995 * 109.63107 * 8.81311 * 10 9 7 33 33 H 1.09001 * 109.51350 * 172.96021 * 11 10 9 34 34 H 1.09008 * 109.51091 * 293.10980 * 11 10 9 35 35 H 1.09000 * 110.73017 * 34.68100 * 14 13 12 36 36 H 1.09002 * 110.72681 * 157.80796 * 14 13 12 37 37 H 1.08996 * 109.98570 * 219.35798 * 15 14 13 38 38 H 1.09003 * 109.77546 * 98.20646 * 15 14 13 39 39 H 1.09001 * 109.46929 * 60.00132 * 19 17 16 40 40 H 1.09008 * 109.46887 * 300.00306 * 19 17 16 41 41 H 1.09000 * 117.49950 * 0.02562 * 22 20 19 42 42 H 1.09002 * 117.50135 * 144.99415 * 22 20 19 43 43 H 1.08995 * 115.55637 * 342.93460 * 25 23 22 44 44 H 1.08999 * 117.49439 * 0.02562 * 26 25 23 45 45 H 1.09000 * 117.50083 * 145.01863 * 26 25 23 46 46 H 1.08997 * 117.49818 * 252.51288 * 27 26 25 47 47 H 1.09000 * 117.49819 * 107.48893 * 27 26 25 48 48 H 1.09002 * 110.37517 * 142.37873 * 28 16 15 49 49 H 1.08994 * 110.38221 * 264.61307 * 28 16 15 50 50 H 1.08997 * 109.64259 * 109.48665 * 29 9 7 51 51 H 1.09002 * 109.64100 * 348.85144 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0595 -1.2198 -0.2560 9 7 1.3647 -2.3656 0.3230 10 6 1.8354 -3.6630 -0.1880 11 6 1.9820 -4.6283 0.9936 12 8 0.7559 -4.6599 1.7312 13 6 0.3700 -3.4098 2.2805 14 6 1.4053 -2.9262 3.3185 15 6 0.9711 -3.6584 4.6075 16 7 -0.4394 -4.0400 4.4395 17 6 -1.1819 -4.7170 5.3377 18 8 -2.3421 -4.9738 5.0950 19 6 -0.5705 -5.1549 6.6437 20 6 -1.6189 -5.8984 7.4737 21 1 -2.3836 -6.4250 6.9027 22 6 -2.0369 -5.2745 8.8067 23 6 -1.1607 -6.5286 8.7913 24 1 -0.1124 -6.4136 9.0668 25 6 -1.8112 -7.8499 9.2061 26 6 -0.8831 -9.0068 9.5820 27 6 -1.6534 -9.0424 8.2605 28 6 -0.9092 -3.5535 3.1279 29 6 0.1766 -2.3593 1.1941 30 1 -0.4849 0.8401 0.0004 31 1 1.1110 -4.0613 -0.8984 32 1 2.7990 -3.5345 -0.6810 33 1 2.2088 -5.6274 0.6215 34 1 2.7890 -4.2890 1.6431 35 1 2.4127 -3.2212 3.0249 36 1 1.3439 -1.8459 3.4500 37 1 1.0759 -2.9950 5.4660 38 1 1.5820 -4.5500 4.7487 39 1 -0.2242 -4.2802 7.1942 40 1 0.2726 -5.8172 6.4462 41 1 -1.5653 -4.3342 9.0922 42 1 -3.0766 -5.3906 9.1127 43 1 -2.7509 -7.7607 9.7511 44 1 0.1908 -8.8264 9.5343 45 1 -1.2121 -9.6788 10.3747 46 1 -2.4892 -9.7378 8.1838 47 1 -1.0862 -8.8856 7.3430 48 1 -1.5855 -4.2781 2.6744 49 1 -1.4049 -2.5889 3.2362 50 1 -0.7098 -2.5986 0.6066 51 1 0.0626 -1.3763 1.6512 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972475546.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:29 Heat of formation + Delta-G solvation = -16.683748 kcal Electronic energy + Delta-G solvation = -29652.074656 eV Core-core repulsion = 25746.156466 eV Total energy + Delta-G solvation = -3905.918190 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.60928 -40.34967 -39.26091 -37.50100 -36.28277 -36.24296 -33.28219 -33.05336 -30.86646 -30.58615 -28.98974 -27.19615 -25.25297 -24.56962 -24.05831 -23.26872 -23.06206 -22.03682 -20.68713 -20.58419 -19.96294 -18.91105 -18.22717 -17.60465 -16.98274 -16.84213 -16.59632 -16.21250 -16.10215 -15.76680 -15.56758 -15.37512 -15.13020 -14.76895 -14.65208 -14.49873 -14.07176 -13.91978 -13.64690 -13.54606 -13.11939 -13.07558 -12.83263 -12.66589 -12.52020 -12.47628 -12.32307 -12.20268 -12.15260 -12.09539 -11.87678 -11.82936 -11.74324 -11.50128 -11.15400 -10.99208 -10.76491 -10.71608 -10.47713 -10.31178 -9.67318 -8.72809 -7.89236 -5.36376 1.46677 1.49349 1.59247 1.63549 1.91698 2.48375 2.67541 2.73405 3.10110 3.24445 3.37308 3.56252 3.61755 3.67338 3.85109 3.92052 4.01097 4.04432 4.17006 4.22683 4.25597 4.30871 4.36399 4.38074 4.46241 4.53194 4.58165 4.59254 4.66935 4.69974 4.72423 4.77423 4.78719 4.83148 4.93472 4.95684 5.05027 5.05938 5.06801 5.13414 5.24213 5.26757 5.27137 5.30211 5.32268 5.45025 5.50929 5.62556 6.29787 6.41339 6.54629 7.06723 7.14580 7.75281 8.30456 9.17268 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.021589 B = 0.002444 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.641958 B =11452.625793 C =11964.969363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.051 4.051 3 Si 0.968 3.032 4 H -0.262 1.262 5 H -0.298 1.298 6 H -0.289 1.289 7 C -0.255 4.255 8 H 0.076 0.924 9 N -0.608 5.608 10 C 0.102 3.898 11 C 0.053 3.947 12 O -0.383 6.383 13 C 0.093 3.907 14 C -0.138 4.138 15 C 0.110 3.890 16 N -0.614 5.614 17 C 0.523 3.477 18 O -0.590 6.590 19 C -0.092 4.092 20 C -0.147 4.147 21 H 0.088 0.912 22 C -0.169 4.169 23 C -0.104 4.104 24 H 0.123 0.877 25 C -0.136 4.136 26 C -0.164 4.164 27 C -0.189 4.189 28 C 0.127 3.873 29 C 0.175 3.825 30 H 0.250 0.750 31 H 0.010 0.990 32 H 0.076 0.924 33 H 0.116 0.884 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.108 0.892 42 H 0.090 0.910 43 H 0.104 0.896 44 H 0.102 0.898 45 H 0.103 0.897 46 H 0.094 0.906 47 H 0.087 0.913 48 H 0.061 0.939 49 H 0.075 0.925 50 H -0.012 1.012 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.412 -13.363 19.489 24.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.246 4.246 3 Si 0.796 3.204 4 H -0.186 1.186 5 H -0.225 1.225 6 H -0.216 1.216 7 C -0.385 4.385 8 H 0.094 0.906 9 N -0.333 5.333 10 C -0.023 4.023 11 C -0.024 4.024 12 O -0.303 6.303 13 C 0.051 3.949 14 C -0.176 4.176 15 C -0.012 4.012 16 N -0.347 5.347 17 C 0.314 3.686 18 O -0.471 6.471 19 C -0.131 4.131 20 C -0.166 4.166 21 H 0.106 0.894 22 C -0.205 4.205 23 C -0.122 4.122 24 H 0.141 0.859 25 C -0.154 4.154 26 C -0.201 4.201 27 C -0.226 4.226 28 C 0.003 3.997 29 C 0.048 3.952 30 H 0.059 0.941 31 H 0.028 0.972 32 H 0.094 0.906 33 H 0.134 0.866 34 H 0.082 0.918 35 H 0.112 0.888 36 H 0.093 0.907 37 H 0.115 0.885 38 H 0.109 0.891 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.127 0.873 42 H 0.109 0.891 43 H 0.122 0.878 44 H 0.121 0.879 45 H 0.121 0.879 46 H 0.112 0.888 47 H 0.106 0.894 48 H 0.079 0.921 49 H 0.093 0.907 50 H 0.006 0.994 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.599 -13.575 19.430 23.974 hybrid contribution -0.270 1.390 -1.065 1.772 sum 3.329 -12.185 18.365 22.290 Atomic orbital electron populations 1.70190 1.06768 1.25865 1.55688 1.25810 0.96002 1.01529 1.01265 0.85197 0.78794 0.79768 0.76635 1.18617 1.22531 1.21565 1.19554 0.92653 0.85050 1.41222 0.90626 1.44337 1.32145 1.02336 1.54442 1.21802 0.98581 0.86709 0.95246 1.23166 0.85943 1.00558 0.92710 1.87656 1.42163 1.30014 1.70436 1.22371 0.94044 0.85398 0.93057 1.22927 1.00109 1.00770 0.93756 1.22231 0.80252 1.00309 0.98390 1.48669 1.13526 1.55371 1.17111 1.21052 0.85417 0.76226 0.85900 1.90664 1.19185 1.57840 1.79397 1.21215 0.98735 1.02354 0.90776 1.22034 1.01029 1.03769 0.89735 0.89408 1.23244 1.00502 0.97396 0.99398 1.21949 0.99566 0.91867 0.98857 0.85937 1.21825 1.00838 0.88702 1.04047 1.23061 0.98390 1.00493 0.98184 1.22988 1.03626 1.01141 0.94801 1.21832 0.95482 0.99305 0.83091 1.20858 0.87809 0.96706 0.89809 0.94081 0.97173 0.90599 0.86627 0.91838 0.88826 0.90709 0.88527 0.89139 0.86331 0.86597 0.87341 0.89132 0.87756 0.87948 0.87861 0.88775 0.89395 0.92053 0.90673 0.99365 0.90953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.34 11.11 21.65 0.24 -54.10 16 2 C -0.05 -2.73 4.98 84.86 0.42 -2.31 16 3 Si 0.97 43.02 29.58 68.60 2.03 45.04 16 4 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 5 H -0.30 -13.55 7.11 99.48 0.71 -12.85 16 6 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 7 C -0.26 -13.25 9.66 84.03 0.81 -12.44 16 8 H 0.08 3.76 7.88 -2.91 -0.02 3.74 16 9 N -0.61 -29.33 2.98 -698.87 -2.08 -31.42 16 10 C 0.10 4.06 6.71 86.35 0.58 4.64 16 11 C 0.05 1.70 6.78 72.08 0.49 2.19 16 12 O -0.38 -14.19 10.28 -148.95 -1.53 -15.72 16 13 C 0.09 3.49 0.84 -10.16 -0.01 3.48 16 14 C -0.14 -4.17 5.87 31.56 0.19 -3.99 16 15 C 0.11 2.52 6.50 86.77 0.56 3.08 16 16 N -0.61 -18.26 3.33 -812.55 -2.71 -20.96 16 17 C 0.52 15.56 7.85 87.66 0.69 16.25 16 18 O -0.59 -22.94 15.83 -3.04 -0.05 -22.99 16 19 C -0.09 -1.73 5.17 29.85 0.15 -1.58 16 20 C -0.15 -2.98 5.06 -10.77 -0.05 -3.03 16 21 H 0.09 2.38 7.30 -2.39 -0.02 2.36 16 22 C -0.17 -2.79 9.89 30.59 0.30 -2.48 16 23 C -0.10 -1.56 5.59 -10.77 -0.06 -1.62 16 24 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 25 C -0.14 -2.04 5.87 -10.79 -0.06 -2.10 16 26 C -0.16 -2.01 10.25 30.60 0.31 -1.69 16 27 C -0.19 -2.93 10.18 30.60 0.31 -2.62 16 28 C 0.13 4.63 6.08 86.55 0.53 5.16 16 29 C 0.17 8.31 4.06 86.01 0.35 8.66 16 30 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 31 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 32 H 0.08 2.78 7.96 -2.39 -0.02 2.76 16 33 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 34 H 0.06 1.85 6.23 -2.38 -0.01 1.84 16 35 H 0.09 2.70 6.08 -2.39 -0.01 2.69 16 36 H 0.07 2.46 7.82 -2.39 -0.02 2.44 16 37 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.12 1.65 7.88 -2.39 -0.02 1.63 16 40 H 0.12 1.73 8.14 -2.38 -0.02 1.71 16 41 H 0.11 1.48 8.03 -2.39 -0.02 1.46 16 42 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 48 H 0.06 2.48 8.06 -2.39 -0.02 2.46 16 49 H 0.08 2.83 8.00 -2.39 -0.02 2.81 16 50 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 51 H 0.07 3.79 5.95 -2.39 -0.01 3.78 16 Total: -1.00 -69.55 401.14 2.31 -67.24 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 0.90 Total: 23.31 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 5.51 Total: 9.60 kcal Atomic # 7 Polarization: -101.93 SS G_CDS: -4.55 Total: -106.48 kcal Atomic # 8 Polarization: -37.13 SS G_CDS: -1.58 Total: -38.71 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Total: -69.55 2.31 -67.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972475546.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.555 kcal (2) G-P(sol) polarization free energy of solvation -69.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds