Wall clock time and date at job start Tue Mar 31 2020 18:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36940 * 119.99501 * 2 1 4 4 H 1.08007 * 119.99572 * 204.57518 * 3 2 1 5 5 C 1.38803 * 120.00489 * 24.56902 * 3 2 1 6 6 N 1.31627 * 120.00056 * 13.97704 * 5 3 2 7 7 Si 1.86800 * 120.00402 * 193.97910 * 5 3 2 8 8 H 1.48499 * 109.47396 * 90.00041 * 7 5 3 9 9 H 1.48502 * 109.47401 * 210.00039 * 7 5 3 10 10 H 1.48497 * 109.46938 * 330.00034 * 7 5 3 11 11 C 1.46496 * 120.00118 * 179.97438 * 2 1 3 12 12 C 1.53035 * 109.46440 * 300.00284 * 11 2 1 13 13 C 1.53187 * 109.31415 * 181.37244 * 12 11 2 14 14 N 1.46926 * 108.77754 * 305.36660 * 13 12 11 15 15 C 1.34774 * 120.63090 * 233.58644 * 14 13 12 16 16 O 1.21289 * 120.00168 * 5.79718 * 15 14 13 17 17 C 1.50699 * 120.00223 * 185.79536 * 15 14 13 18 18 H 1.08996 * 109.47052 * 15.90561 * 17 15 14 19 19 F 1.39904 * 109.47019 * 255.90614 * 17 15 14 20 20 C 1.52995 * 109.47295 * 135.90794 * 17 15 14 21 21 C 1.50704 * 109.46930 * 185.00326 * 20 17 15 22 22 C 1.38231 * 119.99801 * 269.72301 * 21 20 17 23 23 C 1.38236 * 120.00195 * 179.77060 * 22 21 20 24 24 C 1.38238 * 119.99521 * 0.50313 * 23 22 21 25 25 C 1.38230 * 120.00360 * 359.75255 * 24 23 22 26 26 C 1.38234 * 120.00208 * 90.00296 * 21 20 17 27 27 C 1.46921 * 118.73944 * 53.85876 * 14 13 12 28 28 C 1.53038 * 109.44943 * 60.06860 * 11 2 1 29 29 H 1.08998 * 109.47341 * 272.71509 * 1 2 3 30 30 H 1.08998 * 109.47454 * 32.72469 * 1 2 3 31 31 H 1.09012 * 109.46636 * 152.71675 * 1 2 3 32 32 H 0.96997 * 120.00043 * 179.97438 * 6 5 3 33 33 H 1.09000 * 109.45784 * 180.02562 * 11 2 1 34 34 H 1.09001 * 109.49585 * 61.41992 * 12 11 2 35 35 H 1.09004 * 109.50142 * 301.32287 * 12 11 2 36 36 H 1.09004 * 109.58951 * 185.57696 * 13 12 11 37 37 H 1.09002 * 109.70732 * 65.22265 * 13 12 11 38 38 H 1.09000 * 109.47243 * 65.00211 * 20 17 15 39 39 H 1.09004 * 109.47118 * 304.99440 * 20 17 15 40 40 H 1.08007 * 120.00345 * 359.97438 * 22 21 20 41 41 H 1.07997 * 120.00363 * 180.23324 * 23 22 21 42 42 H 1.08006 * 119.99800 * 179.72578 * 24 23 22 43 43 H 1.07996 * 120.00362 * 179.97438 * 25 24 23 44 44 H 1.07995 * 120.00055 * 359.97438 * 26 21 20 45 45 H 1.09001 * 109.58855 * 65.92766 * 27 14 13 46 46 H 1.08999 * 109.58919 * 186.35721 * 27 14 13 47 47 H 1.09009 * 109.49557 * 298.56932 * 28 11 2 48 48 H 1.08997 * 109.49981 * 58.66401 * 28 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1563 1.2284 -0.3890 5 6 1.5498 2.3337 0.4998 6 7 0.4500 2.2425 1.2172 7 14 2.3034 4.0076 0.1543 8 1 1.7342 4.5569 -1.1025 9 1 2.0001 4.9287 1.2790 10 1 3.7749 3.8681 0.0118 11 6 2.1975 -1.2687 0.0006 12 6 1.8277 -2.0705 1.2505 13 6 2.6211 -3.3808 1.2650 14 7 2.3846 -4.0909 0.0007 15 6 1.9583 -5.3695 0.0005 16 8 1.6655 -5.9113 1.0455 17 6 1.8453 -6.1260 -1.2979 18 1 2.4020 -5.6009 -2.0740 19 9 0.4995 -6.2162 -1.6694 20 6 2.4207 -7.5325 -1.1205 21 6 2.4206 -8.2463 -2.4477 22 6 1.3251 -8.9989 -2.8275 23 6 1.3229 -9.6499 -4.0470 24 6 2.4206 -9.5567 -4.8821 25 6 3.5182 -8.8084 -4.5000 26 6 3.5182 -8.1533 -3.2827 27 6 2.6275 -3.3828 -1.2635 28 6 1.8288 -2.0706 -1.2497 29 1 -0.3634 0.0487 1.0265 30 1 -0.3634 0.8645 -0.5555 31 1 -0.3633 -0.9135 -0.4711 32 1 0.0311 3.0444 1.5667 33 1 3.2691 -1.0692 0.0009 34 1 0.7604 -2.2916 1.2382 35 1 2.0691 -1.4892 2.1404 36 1 2.2897 -3.9995 2.0991 37 1 3.6845 -3.1655 1.3697 38 1 1.8097 -8.0880 -0.4090 39 1 3.4419 -7.4626 -0.7457 40 1 0.4694 -9.0757 -2.1730 41 1 0.4655 -10.2349 -4.3454 42 1 2.4208 -10.0690 -5.8329 43 1 4.3760 -8.7360 -5.1522 44 1 4.3758 -7.5686 -2.9842 45 1 3.6911 -3.1652 -1.3619 46 1 2.3004 -4.0025 -2.0983 47 1 0.7614 -2.2916 -1.2383 48 1 2.0709 -1.4892 -2.1393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985803420.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:38 Heat of formation + Delta-G solvation = -34.807584 kcal Electronic energy + Delta-G solvation = -28970.231332 eV Core-core repulsion = 24940.066928 eV Total energy + Delta-G solvation = -4030.164404 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -47.99063 -40.10609 -39.45199 -37.60401 -35.14885 -34.02835 -32.28798 -31.17790 -31.08538 -29.95697 -29.25334 -26.02103 -25.64935 -24.38884 -22.88465 -22.85731 -22.10664 -21.29587 -19.92360 -18.76311 -17.90479 -17.02976 -16.77348 -16.64288 -16.07656 -15.66165 -15.24783 -15.06205 -15.02032 -14.63196 -14.31639 -13.97592 -13.69467 -13.58178 -13.44097 -13.37936 -12.99814 -12.96785 -12.73819 -12.49368 -12.30981 -12.20109 -11.80065 -11.52292 -11.42540 -11.30254 -11.23260 -10.97181 -10.90218 -10.80961 -10.42394 -10.26625 -10.17758 -9.89013 -9.76184 -9.57258 -9.20061 -9.00845 -8.64779 -8.52653 -6.75169 -5.74520 -3.21943 1.01380 1.12289 2.35513 2.82519 3.36369 3.42701 3.44153 3.48141 4.04254 4.30431 4.33015 4.46332 4.51453 4.62728 4.72935 4.79468 4.85601 4.97634 5.18573 5.21579 5.24342 5.31619 5.34790 5.44619 5.48638 5.53001 5.55422 5.70953 5.74423 5.77962 5.83026 5.94858 6.10332 6.16498 6.20081 6.23188 6.30571 6.32445 6.49019 6.53969 6.70823 6.77548 6.94237 6.97710 7.31520 7.34995 7.71212 7.78437 7.97672 8.39198 9.21528 9.85119 10.35697 11.30355 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023055 B = 0.002338 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.179116 B =11972.863442 C =12383.198289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.594 5.594 3 C -0.257 4.257 4 H 0.067 0.933 5 C 0.003 3.997 6 N -0.904 5.904 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.179 3.821 12 C -0.145 4.145 13 C 0.112 3.888 14 N -0.596 5.596 15 C 0.493 3.507 16 O -0.529 6.529 17 C 0.084 3.916 18 H 0.105 0.895 19 F -0.187 7.187 20 C -0.096 4.096 21 C -0.088 4.088 22 C -0.103 4.103 23 C -0.120 4.120 24 C -0.121 4.121 25 C -0.120 4.120 26 C -0.114 4.114 27 C 0.103 3.897 28 C -0.148 4.148 29 H 0.027 0.973 30 H 0.041 0.959 31 H -0.001 1.001 32 H 0.253 0.747 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.074 0.926 46 H 0.078 0.922 47 H 0.064 0.936 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.074 -22.152 -10.077 25.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.316 5.316 3 C -0.387 4.387 4 H 0.085 0.915 5 C -0.196 4.196 6 N -0.548 5.548 7 Si 0.734 3.266 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.071 3.929 12 C -0.185 4.185 13 C -0.010 4.010 14 N -0.329 5.329 15 C 0.278 3.722 16 O -0.405 6.405 17 C 0.045 3.955 18 H 0.122 0.878 19 F -0.168 7.168 20 C -0.134 4.134 21 C -0.088 4.088 22 C -0.121 4.121 23 C -0.138 4.138 24 C -0.140 4.140 25 C -0.138 4.138 26 C -0.132 4.132 27 C -0.020 4.020 28 C -0.188 4.188 29 H 0.045 0.955 30 H 0.059 0.941 31 H 0.017 0.983 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.116 0.884 39 H 0.112 0.888 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.092 0.908 46 H 0.096 0.904 47 H 0.083 0.917 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.770 -22.249 -9.432 24.845 hybrid contribution 0.133 1.111 -0.219 1.140 sum 5.903 -21.138 -9.651 23.975 Atomic orbital electron populations 1.20732 0.82879 0.95692 0.98986 1.43936 1.01705 1.00156 1.85773 1.19192 0.99348 0.85722 1.34431 0.91506 1.25059 0.98184 0.98609 0.97719 1.70070 1.21157 1.27472 1.36145 0.86270 0.78689 0.84263 0.77380 1.21523 1.21797 1.20495 1.20284 0.96050 0.86124 0.90463 1.22507 1.00069 0.94230 1.01703 1.21784 1.00005 0.93985 0.85260 1.48253 1.64738 1.11223 1.08695 1.20818 0.78082 0.82338 0.90972 1.90708 1.48365 1.68183 1.33267 1.21695 0.80229 0.97565 0.96013 0.87789 1.92896 1.34283 1.97304 1.92275 1.21031 1.03587 0.93203 0.95570 1.19712 0.94793 0.98499 0.95776 1.21135 0.97764 0.96468 0.96730 1.21175 0.98462 0.99731 0.94390 1.21187 0.93855 0.99243 0.99666 1.21140 0.98541 0.97637 0.96520 1.21088 0.97972 0.99806 0.94376 1.22075 1.00793 0.94525 0.84648 1.22564 1.00226 0.94386 1.01617 0.95475 0.94065 0.98263 0.93734 0.91823 0.92142 0.90408 0.89513 0.91342 0.88434 0.88764 0.85769 0.85975 0.86136 0.85968 0.85876 0.90760 0.90372 0.91716 0.90526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.94 8.06 59.85 0.48 4.43 16 2 N -0.59 -14.34 2.80 -173.44 -0.49 -14.82 16 3 C -0.26 -6.85 9.55 -15.06 -0.14 -7.00 16 4 H 0.07 1.73 7.84 -52.48 -0.41 1.32 16 5 C 0.00 0.08 5.06 -17.43 -0.09 0.00 16 6 N -0.90 -26.16 10.88 55.49 0.60 -25.55 16 7 Si 0.90 21.51 29.58 -169.99 -5.03 16.48 16 8 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 9 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 11 C 0.18 3.42 2.55 -67.90 -0.17 3.24 16 12 C -0.14 -2.60 5.34 -26.62 -0.14 -2.74 16 13 C 0.11 1.65 6.44 -3.71 -0.02 1.63 16 14 N -0.60 -8.23 2.97 -172.50 -0.51 -8.74 16 15 C 0.49 7.03 7.04 -10.99 -0.08 6.95 16 16 O -0.53 -9.20 16.00 5.55 0.09 -9.11 16 17 C 0.08 0.95 3.18 -27.89 -0.09 0.87 16 18 H 0.10 0.95 5.71 -51.93 -0.30 0.65 16 19 F -0.19 -2.54 16.76 2.25 0.04 -2.50 16 20 C -0.10 -0.93 4.81 -27.88 -0.13 -1.07 16 21 C -0.09 -0.82 5.00 -104.62 -0.52 -1.34 16 22 C -0.10 -0.96 9.56 -39.58 -0.38 -1.34 16 23 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 24 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 25 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 26 C -0.11 -0.93 9.70 -39.58 -0.38 -1.32 16 27 C 0.10 1.23 6.21 -3.49 -0.02 1.21 16 28 C -0.15 -2.32 5.33 -26.39 -0.14 -2.46 16 29 H 0.03 0.72 7.45 -51.93 -0.39 0.33 16 30 H 0.04 1.08 7.31 -51.93 -0.38 0.70 16 31 H 0.00 -0.02 6.46 -51.92 -0.34 -0.36 16 32 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 33 H 0.06 1.21 7.87 -51.93 -0.41 0.80 16 34 H 0.06 1.18 7.72 -51.93 -0.40 0.78 16 35 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 36 H 0.09 1.35 7.00 -51.93 -0.36 0.98 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.10 1.04 7.99 -51.93 -0.41 0.62 16 39 H 0.09 0.79 8.09 -51.93 -0.42 0.37 16 40 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 41 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 42 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 43 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 44 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 45 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.08 0.78 5.43 -51.93 -0.28 0.50 16 47 H 0.06 1.11 6.72 -51.92 -0.35 0.76 16 48 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 385.04 15.07 5.80 5.80 Total: -1.00 -31.87 385.04 -9.91 -41.78 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -7.39 Total: -0.39 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -3.03 Total: -2.94 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: -0.39 Total: -49.12 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.09 Total: -9.11 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.04 Total: -2.50 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.87 -9.91 -41.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985803420.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.976 kcal (2) G-P(sol) polarization free energy of solvation -31.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds