Wall clock time and date at job start Tue Mar 31 2020 18:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36940 * 119.99501 * 2 1 4 4 H 1.08007 * 119.99572 * 204.57518 * 3 2 1 5 5 C 1.38803 * 120.00489 * 24.56902 * 3 2 1 6 6 N 1.31627 * 120.00056 * 13.97704 * 5 3 2 7 7 Si 1.86800 * 120.00402 * 193.97910 * 5 3 2 8 8 H 1.48499 * 109.47396 * 90.00041 * 7 5 3 9 9 H 1.48502 * 109.47401 * 210.00039 * 7 5 3 10 10 H 1.48497 * 109.46938 * 330.00034 * 7 5 3 11 11 C 1.46496 * 120.00118 * 179.97438 * 2 1 3 12 12 C 1.53035 * 109.46440 * 300.00284 * 11 2 1 13 13 C 1.53187 * 109.31415 * 181.37244 * 12 11 2 14 14 N 1.46926 * 108.77754 * 305.36660 * 13 12 11 15 15 C 1.34774 * 120.63090 * 233.58644 * 14 13 12 16 16 O 1.21289 * 120.00168 * 5.79718 * 15 14 13 17 17 C 1.50699 * 120.00223 * 185.79536 * 15 14 13 18 18 H 1.08996 * 109.47052 * 15.90561 * 17 15 14 19 19 F 1.39904 * 109.47019 * 255.90614 * 17 15 14 20 20 C 1.52995 * 109.47295 * 135.90794 * 17 15 14 21 21 C 1.50704 * 109.46930 * 185.00326 * 20 17 15 22 22 C 1.38231 * 119.99801 * 269.72301 * 21 20 17 23 23 C 1.38236 * 120.00195 * 179.77060 * 22 21 20 24 24 C 1.38238 * 119.99521 * 0.50313 * 23 22 21 25 25 C 1.38230 * 120.00360 * 359.75255 * 24 23 22 26 26 C 1.38234 * 120.00208 * 90.00296 * 21 20 17 27 27 C 1.46921 * 118.73944 * 53.85876 * 14 13 12 28 28 C 1.53038 * 109.44943 * 60.06860 * 11 2 1 29 29 H 1.08998 * 109.47341 * 272.71509 * 1 2 3 30 30 H 1.08998 * 109.47454 * 32.72469 * 1 2 3 31 31 H 1.09012 * 109.46636 * 152.71675 * 1 2 3 32 32 H 0.96997 * 120.00043 * 179.97438 * 6 5 3 33 33 H 1.09000 * 109.45784 * 180.02562 * 11 2 1 34 34 H 1.09001 * 109.49585 * 61.41992 * 12 11 2 35 35 H 1.09004 * 109.50142 * 301.32287 * 12 11 2 36 36 H 1.09004 * 109.58951 * 185.57696 * 13 12 11 37 37 H 1.09002 * 109.70732 * 65.22265 * 13 12 11 38 38 H 1.09000 * 109.47243 * 65.00211 * 20 17 15 39 39 H 1.09004 * 109.47118 * 304.99440 * 20 17 15 40 40 H 1.08007 * 120.00345 * 359.97438 * 22 21 20 41 41 H 1.07997 * 120.00363 * 180.23324 * 23 22 21 42 42 H 1.08006 * 119.99800 * 179.72578 * 24 23 22 43 43 H 1.07996 * 120.00362 * 179.97438 * 25 24 23 44 44 H 1.07995 * 120.00055 * 359.97438 * 26 21 20 45 45 H 1.09001 * 109.58855 * 65.92766 * 27 14 13 46 46 H 1.08999 * 109.58919 * 186.35721 * 27 14 13 47 47 H 1.09009 * 109.49557 * 298.56932 * 28 11 2 48 48 H 1.08997 * 109.49981 * 58.66401 * 28 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1563 1.2284 -0.3890 5 6 1.5498 2.3337 0.4998 6 7 0.4500 2.2425 1.2172 7 14 2.3034 4.0076 0.1543 8 1 1.7342 4.5569 -1.1025 9 1 2.0001 4.9287 1.2790 10 1 3.7749 3.8681 0.0118 11 6 2.1975 -1.2687 0.0006 12 6 1.8277 -2.0705 1.2505 13 6 2.6211 -3.3808 1.2650 14 7 2.3846 -4.0909 0.0007 15 6 1.9583 -5.3695 0.0005 16 8 1.6655 -5.9113 1.0455 17 6 1.8453 -6.1260 -1.2979 18 1 2.4020 -5.6009 -2.0740 19 9 0.4995 -6.2162 -1.6694 20 6 2.4207 -7.5325 -1.1205 21 6 2.4206 -8.2463 -2.4477 22 6 1.3251 -8.9989 -2.8275 23 6 1.3229 -9.6499 -4.0470 24 6 2.4206 -9.5567 -4.8821 25 6 3.5182 -8.8084 -4.5000 26 6 3.5182 -8.1533 -3.2827 27 6 2.6275 -3.3828 -1.2635 28 6 1.8288 -2.0706 -1.2497 29 1 -0.3634 0.0487 1.0265 30 1 -0.3634 0.8645 -0.5555 31 1 -0.3633 -0.9135 -0.4711 32 1 0.0311 3.0444 1.5667 33 1 3.2691 -1.0692 0.0009 34 1 0.7604 -2.2916 1.2382 35 1 2.0691 -1.4892 2.1404 36 1 2.2897 -3.9995 2.0991 37 1 3.6845 -3.1655 1.3697 38 1 1.8097 -8.0880 -0.4090 39 1 3.4419 -7.4626 -0.7457 40 1 0.4694 -9.0757 -2.1730 41 1 0.4655 -10.2349 -4.3454 42 1 2.4208 -10.0690 -5.8329 43 1 4.3760 -8.7360 -5.1522 44 1 4.3758 -7.5686 -2.9842 45 1 3.6911 -3.1652 -1.3619 46 1 2.3004 -4.0025 -2.0983 47 1 0.7614 -2.2916 -1.2383 48 1 2.0709 -1.4892 -2.1393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985803420.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:37 Heat of formation + Delta-G solvation = -51.136848 kcal Electronic energy + Delta-G solvation = -28970.939422 eV Core-core repulsion = 24940.066928 eV Total energy + Delta-G solvation = -4030.872494 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -48.97775 -41.26196 -40.06989 -39.01225 -36.77520 -34.79192 -33.96453 -32.34040 -31.73764 -31.54553 -30.18086 -28.03528 -26.84231 -25.60069 -24.16183 -23.60303 -23.43122 -22.04321 -21.22169 -20.00712 -18.97797 -18.74772 -17.76960 -17.54201 -17.14519 -16.92218 -16.54244 -15.91341 -15.81215 -15.75939 -15.68115 -15.41138 -15.13577 -14.93585 -14.50605 -14.25048 -14.11319 -14.04501 -13.78994 -13.67145 -13.55083 -13.25162 -13.12952 -12.96104 -12.82454 -12.67009 -12.39357 -12.31259 -12.16004 -12.06527 -11.92971 -11.84748 -11.81792 -11.62815 -11.26110 -10.82356 -10.59839 -9.79030 -9.78064 -9.62722 -8.75065 -7.81472 -5.30982 0.41129 0.54174 1.24103 1.47838 1.49062 1.57577 1.76366 2.51719 2.86695 3.06866 3.32006 3.48411 3.53362 3.61298 3.78907 3.89687 3.92791 4.07542 4.13946 4.16477 4.20792 4.27744 4.35009 4.36973 4.52685 4.57491 4.65886 4.67962 4.75614 4.80059 4.82141 4.86294 4.89565 4.96436 5.07057 5.14895 5.20744 5.21209 5.30906 5.47359 5.55622 5.60233 5.66916 5.66994 5.68095 5.71125 6.14925 6.21105 6.35544 6.86698 7.15871 7.88583 8.34947 9.22139 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023055 B = 0.002338 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.179116 B =11972.863442 C =12383.198289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.610 5.610 3 C -0.259 4.259 4 H 0.077 0.923 5 C -0.057 4.057 6 N -0.941 5.941 7 Si 0.968 3.032 8 H -0.288 1.288 9 H -0.300 1.300 10 H -0.264 1.264 11 C 0.173 3.827 12 C -0.134 4.134 13 C 0.122 3.878 14 N -0.596 5.596 15 C 0.490 3.510 16 O -0.566 6.566 17 C 0.088 3.912 18 H 0.136 0.864 19 F -0.201 7.201 20 C -0.089 4.089 21 C -0.100 4.100 22 C -0.123 4.123 23 C -0.130 4.130 24 C -0.126 4.126 25 C -0.125 4.125 26 C -0.118 4.118 27 C 0.108 3.892 28 C -0.139 4.139 29 H -0.005 1.005 30 H 0.014 0.986 31 H 0.024 0.976 32 H 0.246 0.754 33 H 0.071 0.929 34 H 0.036 0.964 35 H 0.054 0.946 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.110 0.890 40 H 0.117 0.883 41 H 0.135 0.865 42 H 0.141 0.859 43 H 0.145 0.855 44 H 0.144 0.856 45 H 0.106 0.894 46 H 0.107 0.893 47 H 0.046 0.954 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.733 -23.345 -12.544 27.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.332 5.332 3 C -0.389 4.389 4 H 0.095 0.905 5 C -0.252 4.252 6 N -0.588 5.588 7 Si 0.797 3.203 8 H -0.215 1.215 9 H -0.227 1.227 10 H -0.188 1.188 11 C 0.067 3.933 12 C -0.174 4.174 13 C -0.001 4.001 14 N -0.328 5.328 15 C 0.277 3.723 16 O -0.445 6.445 17 C 0.049 3.951 18 H 0.153 0.847 19 F -0.182 7.182 20 C -0.127 4.127 21 C -0.100 4.100 22 C -0.142 4.142 23 C -0.148 4.148 24 C -0.144 4.144 25 C -0.143 4.143 26 C -0.136 4.136 27 C -0.014 4.014 28 C -0.178 4.178 29 H 0.013 0.987 30 H 0.033 0.967 31 H 0.042 0.958 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.112 0.888 38 H 0.098 0.902 39 H 0.129 0.871 40 H 0.135 0.865 41 H 0.153 0.847 42 H 0.159 0.841 43 H 0.163 0.837 44 H 0.162 0.838 45 H 0.124 0.876 46 H 0.125 0.875 47 H 0.065 0.935 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.462 -23.474 -11.933 27.659 hybrid contribution -0.695 1.409 0.535 1.660 sum 7.767 -22.065 -11.398 26.021 Atomic orbital electron populations 1.20388 0.83681 0.95576 0.96813 1.44186 1.01595 1.01558 1.85840 1.19593 0.99581 0.86725 1.32972 0.90548 1.25853 0.98963 1.02131 0.98210 1.70248 1.22863 1.27758 1.37892 0.85245 0.78657 0.79878 0.76540 1.21495 1.22720 1.18815 1.20549 0.95851 0.84598 0.92346 1.22300 0.99093 0.95694 1.00328 1.21599 1.00698 0.91899 0.85908 1.48330 1.64365 1.11242 1.08893 1.21374 0.76975 0.82348 0.91608 1.90694 1.49812 1.69044 1.34978 1.21867 0.79758 0.98463 0.94995 0.84669 1.92871 1.35701 1.97403 1.92229 1.20964 1.03964 0.92035 0.95745 1.19720 0.95427 0.99086 0.95791 1.21255 0.97992 0.97487 0.97418 1.21406 0.99419 0.99822 0.94168 1.21516 0.93550 0.99049 1.00316 1.21484 0.99191 0.96991 0.96641 1.21353 0.98053 0.99875 0.94302 1.22220 1.02040 0.92625 0.84543 1.22391 0.99806 0.95964 0.99676 0.98664 0.96716 0.95766 0.94490 0.91102 0.94540 0.92692 0.90476 0.88755 0.90157 0.87146 0.86521 0.84738 0.84121 0.83733 0.83822 0.87585 0.87469 0.93483 0.89934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.08 8.06 127.77 1.03 10.11 16 2 N -0.61 -29.53 2.80 -702.64 -1.97 -31.50 16 3 C -0.26 -13.70 9.55 84.03 0.80 -12.90 16 4 H 0.08 3.84 7.84 -2.91 -0.02 3.82 16 5 C -0.06 -3.14 5.06 84.86 0.43 -2.71 16 6 N -0.94 -56.18 10.88 21.65 0.24 -55.95 16 7 Si 0.97 44.47 29.58 68.60 2.03 46.50 16 8 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 9 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 10 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 11 C 0.17 6.40 2.55 45.02 0.11 6.51 16 12 C -0.13 -4.81 5.34 30.67 0.16 -4.65 16 13 C 0.12 3.43 6.44 86.36 0.56 3.98 16 14 N -0.60 -14.98 2.97 -818.07 -2.43 -17.41 16 15 C 0.49 13.13 7.04 87.66 0.62 13.75 16 16 O -0.57 -19.50 16.00 -3.06 -0.05 -19.55 16 17 C 0.09 1.79 3.18 29.85 0.09 1.88 16 18 H 0.14 1.88 5.71 -2.39 -0.01 1.86 16 19 F -0.20 -5.22 16.76 44.97 0.75 -4.46 16 20 C -0.09 -1.58 4.81 29.85 0.14 -1.44 16 21 C -0.10 -1.67 5.00 -19.87 -0.10 -1.77 16 22 C -0.12 -2.20 9.56 22.27 0.21 -1.99 16 23 C -0.13 -1.95 10.05 22.27 0.22 -1.72 16 24 C -0.13 -1.60 10.05 22.27 0.22 -1.37 16 25 C -0.13 -1.49 10.05 22.27 0.22 -1.27 16 26 C -0.12 -1.55 9.70 22.27 0.22 -1.34 16 27 C 0.11 2.15 6.21 86.51 0.54 2.69 16 28 C -0.14 -4.03 5.33 30.82 0.16 -3.86 16 29 H 0.00 -0.28 7.45 -2.39 -0.02 -0.30 16 30 H 0.01 0.78 7.31 -2.39 -0.02 0.76 16 31 H 0.02 1.06 6.46 -2.38 -0.02 1.05 16 32 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 33 H 0.07 2.52 7.87 -2.39 -0.02 2.50 16 34 H 0.04 1.46 7.72 -2.39 -0.02 1.44 16 35 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 36 H 0.08 2.36 7.00 -2.38 -0.02 2.35 16 37 H 0.09 2.21 8.14 -2.39 -0.02 2.20 16 38 H 0.08 1.70 7.99 -2.39 -0.02 1.68 16 39 H 0.11 1.56 8.09 -2.38 -0.02 1.54 16 40 H 0.12 2.13 8.06 -2.91 -0.02 2.10 16 41 H 0.13 1.53 8.06 -2.91 -0.02 1.51 16 42 H 0.14 1.12 8.06 -2.91 -0.02 1.10 16 43 H 0.14 1.02 8.06 -2.91 -0.02 1.00 16 44 H 0.14 1.22 8.06 -2.91 -0.02 1.19 16 45 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.11 1.60 5.43 -2.39 -0.01 1.58 16 47 H 0.05 1.54 6.72 -2.38 -0.02 1.52 16 48 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -71.47 385.04 5.17 -66.30 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 0.95 Total: 12.17 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: 5.65 Total: 3.89 kcal Atomic # 7 Polarization: -100.69 SS G_CDS: -4.16 Total: -104.85 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.05 Total: -19.55 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 0.75 Total: -4.46 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -71.47 5.17 -66.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985803420.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.160 kcal (2) G-P(sol) polarization free energy of solvation -71.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds