Wall clock time and date at job start Tue Mar 31 2020 18:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36934 * 120.00259 * 2 1 4 4 H 1.08003 * 120.00148 * 201.98978 * 3 2 1 5 5 C 1.38815 * 119.99626 * 21.99684 * 3 2 1 6 6 N 1.31620 * 120.00046 * 12.67715 * 5 3 2 7 7 Si 1.86798 * 119.99795 * 192.67658 * 5 3 2 8 8 H 1.48502 * 109.47095 * 59.99838 * 7 5 3 9 9 H 1.48495 * 109.47277 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47292 * 300.00212 * 7 5 3 11 11 C 1.46503 * 120.00066 * 180.02562 * 2 1 3 12 12 H 1.08999 * 109.52638 * 179.91708 * 11 2 1 13 13 C 1.53043 * 109.49733 * 300.00510 * 11 2 1 14 14 C 1.53035 * 109.53885 * 181.31584 * 13 11 2 15 15 C 1.53199 * 109.31105 * 298.63211 * 14 13 11 16 16 N 1.46926 * 108.77713 * 54.63425 * 15 14 13 17 17 C 1.34779 * 120.62992 * 126.41195 * 16 15 14 18 18 O 1.21276 * 119.99769 * 179.97438 * 17 16 15 19 19 C 1.50699 * 119.99970 * 0.02562 * 17 16 15 20 20 C 1.53005 * 109.46977 * 179.97438 * 19 17 16 21 21 C 1.50699 * 109.46977 * 179.97438 * 20 19 17 22 22 C 1.38219 * 120.01473 * 264.72392 * 21 20 19 23 23 C 1.38222 * 120.02785 * 179.72159 * 22 21 20 24 24 C 1.38267 * 120.04807 * 0.55634 * 23 22 21 25 25 C 1.38174 * 120.02698 * 359.71872 * 24 23 22 26 26 C 1.38443 * 120.01254 * 84.99831 * 21 20 19 27 27 F 1.35104 * 120.02679 * 359.97438 * 26 21 20 28 28 C 1.46922 * 118.73927 * 306.39451 * 16 15 14 29 29 H 1.08999 * 109.47406 * 274.33824 * 1 2 3 30 30 H 1.09007 * 109.47141 * 34.33567 * 1 2 3 31 31 H 1.09002 * 109.47151 * 154.33170 * 1 2 3 32 32 H 0.96999 * 119.99551 * 179.97438 * 6 5 3 33 33 H 1.09000 * 109.45339 * 301.33330 * 13 11 2 34 34 H 1.08997 * 109.46254 * 61.30600 * 13 11 2 35 35 H 1.09005 * 109.50262 * 58.58173 * 14 13 11 36 36 H 1.08997 * 109.50307 * 178.64599 * 14 13 11 37 37 H 1.08998 * 109.58498 * 174.42244 * 15 14 13 38 38 H 1.08997 * 109.58358 * 294.84487 * 15 14 13 39 39 H 1.09000 * 109.47332 * 300.00012 * 19 17 16 40 40 H 1.08999 * 109.47236 * 60.00015 * 19 17 16 41 41 H 1.09002 * 109.46412 * 300.00030 * 20 19 17 42 42 H 1.08999 * 109.47089 * 59.99969 * 20 19 17 43 43 H 1.08005 * 119.98255 * 0.02562 * 22 21 20 44 44 H 1.07996 * 119.97634 * 180.25376 * 23 22 21 45 45 H 1.07995 * 119.98878 * 179.74545 * 24 23 22 46 46 H 1.08002 * 120.01431 * 180.02562 * 25 24 23 47 47 H 1.09002 * 109.58411 * 293.82471 * 28 16 15 48 48 H 1.08996 * 109.58833 * 173.39756 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1708 1.2199 -0.3502 5 6 1.5314 2.3442 0.4503 6 7 0.3913 2.2703 1.1040 7 14 2.3173 4.0080 0.1285 8 1 2.4499 4.2180 -1.3356 9 1 1.4652 5.0781 0.7063 10 1 3.6614 4.0507 0.7584 11 6 2.1975 -1.2687 -0.0006 12 1 3.2693 -1.0706 -0.0020 13 6 1.8281 -2.0724 1.2484 14 6 2.6174 -3.3834 1.2654 15 6 2.2495 -4.2124 0.0308 16 7 2.4652 -3.3937 -1.1700 17 6 3.2357 -3.8451 -2.1796 18 8 3.4056 -3.1599 -3.1657 19 6 3.8850 -5.2016 -2.0834 20 6 4.6976 -5.4691 -3.3520 21 6 5.3474 -6.8253 -3.2555 22 6 6.6481 -6.9381 -2.8017 23 6 7.2424 -8.1825 -2.7077 24 6 6.5407 -9.3147 -3.0784 25 6 5.2422 -9.2039 -3.5377 26 6 4.6438 -7.9583 -3.6269 27 9 3.3741 -7.8489 -4.0754 28 6 1.8247 -2.0738 -1.2496 29 1 -0.3634 0.0777 1.0247 30 1 -0.3634 0.8486 -0.5797 31 1 -0.3633 -0.9263 -0.4451 32 1 -0.0405 3.0798 1.4189 33 1 2.0697 -1.4915 2.1385 34 1 0.7605 -2.2917 1.2366 35 1 3.6854 -3.1654 1.2522 36 1 2.3719 -3.9443 2.1672 37 1 2.8799 -5.1003 -0.0143 38 1 1.2019 -4.5080 0.0882 39 1 4.5450 -5.2279 -1.2164 40 1 3.1154 -5.9661 -1.9774 41 1 4.0370 -5.4430 -4.2187 42 1 5.4672 -4.7046 -3.4584 43 1 7.1985 -6.0540 -2.5158 44 1 8.2573 -8.2700 -2.3491 45 1 7.0074 -10.2861 -3.0084 46 1 4.6941 -10.0885 -3.8268 47 1 0.7425 -2.1950 -1.2966 48 1 2.1749 -1.5507 -2.1394 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027679585.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:00 Heat of formation + Delta-G solvation = -39.406204 kcal Electronic energy + Delta-G solvation = -28735.775883 eV Core-core repulsion = 24705.412068 eV Total energy + Delta-G solvation = -4030.363815 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -49.13511 -40.09533 -39.31525 -37.48709 -35.07665 -34.32459 -32.31516 -31.32956 -30.93499 -30.11429 -28.61475 -26.02369 -25.72516 -24.29927 -23.32043 -23.07194 -21.66393 -21.42969 -19.46532 -18.52479 -17.89267 -17.13570 -16.79872 -16.69832 -15.96920 -15.85990 -15.55811 -15.40934 -14.87046 -14.50662 -14.11519 -13.98533 -13.88573 -13.66134 -13.48670 -13.21217 -13.15564 -12.78952 -12.65746 -12.47470 -12.33863 -12.08987 -11.96467 -11.87925 -11.28901 -11.14528 -11.02566 -10.91985 -10.83500 -10.62414 -10.40684 -10.29396 -10.12524 -9.86541 -9.78943 -9.56085 -9.28993 -8.95266 -8.59076 -8.30780 -6.74659 -5.70563 -3.16191 0.80457 0.84975 2.81612 3.13324 3.29878 3.41351 3.46240 3.48528 3.95551 4.27130 4.40393 4.51347 4.57477 4.76071 4.84551 4.85539 4.96041 5.01095 5.06684 5.17796 5.32781 5.35690 5.46300 5.51949 5.55951 5.56793 5.62787 5.71351 5.79933 5.83877 5.87932 5.97114 6.01338 6.02619 6.10950 6.17487 6.24646 6.39774 6.53142 6.55377 6.67814 6.81249 6.95597 7.01685 7.40608 7.65972 7.73842 7.83142 8.36914 8.43008 9.25347 9.88084 10.36230 11.34280 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022298 B = 0.002291 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.394349 B =12219.092699 C =12504.855356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.593 5.593 3 C -0.254 4.254 4 H 0.068 0.932 5 C 0.002 3.998 6 N -0.908 5.908 7 Si 0.906 3.094 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.170 3.830 12 H 0.064 0.936 13 C -0.132 4.132 14 C -0.132 4.132 15 C 0.107 3.893 16 N -0.606 5.606 17 C 0.511 3.489 18 O -0.544 6.544 19 C -0.132 4.132 20 C -0.066 4.066 21 C -0.112 4.112 22 C -0.088 4.088 23 C -0.129 4.129 24 C -0.098 4.098 25 C -0.154 4.154 26 C 0.100 3.900 27 F -0.136 7.136 28 C 0.096 3.904 29 H 0.029 0.971 30 H 0.043 0.957 31 H -0.002 1.002 32 H 0.252 0.748 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.134 0.866 44 H 0.129 0.871 45 H 0.130 0.870 46 H 0.134 0.866 47 H 0.062 0.938 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.966 -25.055 -4.160 27.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.315 5.315 3 C -0.383 4.383 4 H 0.085 0.915 5 C -0.196 4.196 6 N -0.554 5.554 7 Si 0.736 3.264 8 H -0.210 1.210 9 H -0.217 1.217 10 H -0.210 1.210 11 C 0.061 3.939 12 H 0.082 0.918 13 C -0.172 4.172 14 C -0.171 4.171 15 C -0.016 4.016 16 N -0.339 5.339 17 C 0.299 3.701 18 O -0.421 6.421 19 C -0.172 4.172 20 C -0.104 4.104 21 C -0.113 4.113 22 C -0.106 4.106 23 C -0.147 4.147 24 C -0.116 4.116 25 C -0.173 4.173 26 C 0.081 3.919 27 F -0.115 7.115 28 C -0.027 4.027 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.016 0.984 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.102 0.898 42 H 0.106 0.894 43 H 0.152 0.848 44 H 0.147 0.853 45 H 0.148 0.852 46 H 0.152 0.848 47 H 0.081 0.919 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.861 -24.491 -4.634 26.805 hybrid contribution 0.002 0.861 0.017 0.861 sum 9.863 -23.631 -4.616 26.019 Atomic orbital electron populations 1.20788 0.82579 0.95512 0.99318 1.43887 1.01846 1.00036 1.85718 1.19190 0.97731 0.85242 1.36180 0.91454 1.24990 0.97805 0.98436 0.98406 1.70065 1.18486 1.27101 1.39707 0.86317 0.78392 0.83709 0.78023 1.21043 1.21658 1.20976 1.20574 0.96368 0.86237 0.90761 0.91791 1.22121 0.99429 0.94673 1.00975 1.21935 1.01057 0.97488 0.96636 1.21757 1.01353 0.93526 0.84932 1.48210 1.49072 1.18992 1.17670 1.20517 0.78770 0.88098 0.82695 1.90697 1.61631 1.58731 1.31085 1.21643 1.00380 0.95468 0.99735 1.20298 0.99806 0.92165 0.98122 1.20046 0.95209 0.94793 1.01293 1.21045 0.93513 0.98289 0.97728 1.21232 1.00483 0.92346 1.00630 1.21011 0.93521 0.99156 0.97889 1.21161 0.96623 0.96241 1.03250 1.17626 0.80047 0.94140 1.00128 1.91512 1.36416 1.96885 1.86664 1.22415 0.96847 0.81485 1.02003 0.95231 0.93777 0.98382 0.93738 0.91487 0.92469 0.91801 0.91305 0.90352 0.91474 0.88770 0.89088 0.89752 0.89448 0.84826 0.85314 0.85159 0.84837 0.91937 0.89236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.99 8.03 59.84 0.48 4.47 16 2 N -0.59 -14.86 2.82 -173.34 -0.49 -15.35 16 3 C -0.25 -7.06 9.60 -15.06 -0.14 -7.20 16 4 H 0.07 1.85 7.81 -52.48 -0.41 1.44 16 5 C 0.00 0.05 5.10 -17.43 -0.09 -0.04 16 6 N -0.91 -26.52 10.64 55.49 0.59 -25.93 16 7 Si 0.91 22.19 29.57 -169.99 -5.03 17.17 16 8 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 9 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 C 0.17 3.48 2.74 -67.80 -0.19 3.29 16 12 H 0.06 1.39 7.86 -51.93 -0.41 0.98 16 13 C -0.13 -2.30 5.15 -26.69 -0.14 -2.44 16 14 C -0.13 -1.69 6.08 -26.61 -0.16 -1.86 16 15 C 0.11 1.26 6.34 -3.71 -0.02 1.24 16 16 N -0.61 -9.25 2.97 -172.77 -0.51 -9.76 16 17 C 0.51 7.84 7.70 -10.98 -0.08 7.76 16 18 O -0.54 -10.51 15.39 5.56 0.09 -10.42 16 19 C -0.13 -1.43 4.03 -27.88 -0.11 -1.55 16 20 C -0.07 -0.72 4.41 -27.88 -0.12 -0.85 16 21 C -0.11 -1.06 5.14 -104.55 -0.54 -1.60 16 22 C -0.09 -0.67 9.68 -39.59 -0.38 -1.06 16 23 C -0.13 -0.83 10.04 -39.58 -0.40 -1.22 16 24 C -0.10 -0.62 10.04 -39.59 -0.40 -1.01 16 25 C -0.15 -1.18 10.03 -39.52 -0.40 -1.58 16 26 C 0.10 0.97 7.24 -39.42 -0.29 0.69 16 27 F -0.14 -1.53 16.57 2.25 0.04 -1.49 16 28 C 0.10 1.80 5.78 -3.71 -0.02 1.78 16 29 H 0.03 0.78 7.41 -51.93 -0.38 0.39 16 30 H 0.04 1.18 7.21 -51.93 -0.37 0.80 16 31 H 0.00 -0.05 6.35 -51.93 -0.33 -0.38 16 32 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.06 1.00 7.72 -51.93 -0.40 0.60 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.70 5.93 -51.93 -0.31 0.39 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.09 0.85 7.69 -51.93 -0.40 0.45 16 40 H 0.09 0.89 7.94 -51.93 -0.41 0.48 16 41 H 0.08 1.05 7.75 -51.93 -0.40 0.65 16 42 H 0.09 0.97 8.01 -51.93 -0.42 0.55 16 43 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 44 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 45 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 46 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 47 H 0.06 1.17 6.49 -51.93 -0.34 0.83 16 48 H 0.09 1.91 7.00 -51.93 -0.36 1.55 16 LS Contribution 384.72 15.07 5.80 5.80 Total: -1.00 -32.41 384.72 -9.98 -42.40 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -7.46 Total: -1.24 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -3.00 Total: -1.17 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: -0.41 Total: -51.04 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.17 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.41 -9.98 -42.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027679585.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.989 kcal (2) G-P(sol) polarization free energy of solvation -32.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds