Wall clock time and date at job start Tue Mar 31 2020 18:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36934 * 120.00259 * 2 1 4 4 H 1.08003 * 120.00148 * 201.98978 * 3 2 1 5 5 C 1.38815 * 119.99626 * 21.99684 * 3 2 1 6 6 N 1.31620 * 120.00046 * 12.67715 * 5 3 2 7 7 Si 1.86798 * 119.99795 * 192.67658 * 5 3 2 8 8 H 1.48502 * 109.47095 * 59.99838 * 7 5 3 9 9 H 1.48495 * 109.47277 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47292 * 300.00212 * 7 5 3 11 11 C 1.46503 * 120.00066 * 180.02562 * 2 1 3 12 12 H 1.08999 * 109.52638 * 179.91708 * 11 2 1 13 13 C 1.53043 * 109.49733 * 300.00510 * 11 2 1 14 14 C 1.53035 * 109.53885 * 181.31584 * 13 11 2 15 15 C 1.53199 * 109.31105 * 298.63211 * 14 13 11 16 16 N 1.46926 * 108.77713 * 54.63425 * 15 14 13 17 17 C 1.34779 * 120.62992 * 126.41195 * 16 15 14 18 18 O 1.21276 * 119.99769 * 179.97438 * 17 16 15 19 19 C 1.50699 * 119.99970 * 0.02562 * 17 16 15 20 20 C 1.53005 * 109.46977 * 179.97438 * 19 17 16 21 21 C 1.50699 * 109.46977 * 179.97438 * 20 19 17 22 22 C 1.38219 * 120.01473 * 264.72392 * 21 20 19 23 23 C 1.38222 * 120.02785 * 179.72159 * 22 21 20 24 24 C 1.38267 * 120.04807 * 0.55634 * 23 22 21 25 25 C 1.38174 * 120.02698 * 359.71872 * 24 23 22 26 26 C 1.38443 * 120.01254 * 84.99831 * 21 20 19 27 27 F 1.35104 * 120.02679 * 359.97438 * 26 21 20 28 28 C 1.46922 * 118.73927 * 306.39451 * 16 15 14 29 29 H 1.08999 * 109.47406 * 274.33824 * 1 2 3 30 30 H 1.09007 * 109.47141 * 34.33567 * 1 2 3 31 31 H 1.09002 * 109.47151 * 154.33170 * 1 2 3 32 32 H 0.96999 * 119.99551 * 179.97438 * 6 5 3 33 33 H 1.09000 * 109.45339 * 301.33330 * 13 11 2 34 34 H 1.08997 * 109.46254 * 61.30600 * 13 11 2 35 35 H 1.09005 * 109.50262 * 58.58173 * 14 13 11 36 36 H 1.08997 * 109.50307 * 178.64599 * 14 13 11 37 37 H 1.08998 * 109.58498 * 174.42244 * 15 14 13 38 38 H 1.08997 * 109.58358 * 294.84487 * 15 14 13 39 39 H 1.09000 * 109.47332 * 300.00012 * 19 17 16 40 40 H 1.08999 * 109.47236 * 60.00015 * 19 17 16 41 41 H 1.09002 * 109.46412 * 300.00030 * 20 19 17 42 42 H 1.08999 * 109.47089 * 59.99969 * 20 19 17 43 43 H 1.08005 * 119.98255 * 0.02562 * 22 21 20 44 44 H 1.07996 * 119.97634 * 180.25376 * 23 22 21 45 45 H 1.07995 * 119.98878 * 179.74545 * 24 23 22 46 46 H 1.08002 * 120.01431 * 180.02562 * 25 24 23 47 47 H 1.09002 * 109.58411 * 293.82471 * 28 16 15 48 48 H 1.08996 * 109.58833 * 173.39756 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1708 1.2199 -0.3502 5 6 1.5314 2.3442 0.4503 6 7 0.3913 2.2703 1.1040 7 14 2.3173 4.0080 0.1285 8 1 2.4499 4.2180 -1.3356 9 1 1.4652 5.0781 0.7063 10 1 3.6614 4.0507 0.7584 11 6 2.1975 -1.2687 -0.0006 12 1 3.2693 -1.0706 -0.0020 13 6 1.8281 -2.0724 1.2484 14 6 2.6174 -3.3834 1.2654 15 6 2.2495 -4.2124 0.0308 16 7 2.4652 -3.3937 -1.1700 17 6 3.2357 -3.8451 -2.1796 18 8 3.4056 -3.1599 -3.1657 19 6 3.8850 -5.2016 -2.0834 20 6 4.6976 -5.4691 -3.3520 21 6 5.3474 -6.8253 -3.2555 22 6 6.6481 -6.9381 -2.8017 23 6 7.2424 -8.1825 -2.7077 24 6 6.5407 -9.3147 -3.0784 25 6 5.2422 -9.2039 -3.5377 26 6 4.6438 -7.9583 -3.6269 27 9 3.3741 -7.8489 -4.0754 28 6 1.8247 -2.0738 -1.2496 29 1 -0.3634 0.0777 1.0247 30 1 -0.3634 0.8486 -0.5797 31 1 -0.3633 -0.9263 -0.4451 32 1 -0.0405 3.0798 1.4189 33 1 2.0697 -1.4915 2.1385 34 1 0.7605 -2.2917 1.2366 35 1 3.6854 -3.1654 1.2522 36 1 2.3719 -3.9443 2.1672 37 1 2.8799 -5.1003 -0.0143 38 1 1.2019 -4.5080 0.0882 39 1 4.5450 -5.2279 -1.2164 40 1 3.1154 -5.9661 -1.9774 41 1 4.0370 -5.4430 -4.2187 42 1 5.4672 -4.7046 -3.4584 43 1 7.1985 -6.0540 -2.5158 44 1 8.2573 -8.2700 -2.3491 45 1 7.0074 -10.2861 -3.0084 46 1 4.6941 -10.0885 -3.8268 47 1 0.7425 -2.1950 -1.2966 48 1 2.1749 -1.5507 -2.1394 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027679585.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:59 Heat of formation + Delta-G solvation = -56.775916 kcal Electronic energy + Delta-G solvation = -28736.529090 eV Core-core repulsion = 24705.412068 eV Total energy + Delta-G solvation = -4031.117022 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.86650 -41.31540 -39.96424 -38.94040 -36.78471 -35.15098 -33.93939 -32.87017 -31.54510 -31.11985 -30.02089 -28.08170 -26.84770 -25.58228 -24.76656 -23.65438 -23.04316 -22.20415 -20.94884 -19.82078 -18.81000 -18.56164 -18.14848 -17.48873 -17.15481 -16.83004 -16.51569 -16.43924 -16.43629 -15.71380 -15.47890 -15.22068 -15.04643 -14.75867 -14.62314 -14.46560 -14.10552 -13.95921 -13.87491 -13.68847 -13.61934 -13.47258 -12.89582 -12.87460 -12.72870 -12.58933 -12.49963 -12.30865 -12.13899 -12.02615 -11.94988 -11.82713 -11.79392 -11.69073 -11.40066 -10.85599 -10.66351 -9.86786 -9.70857 -9.56613 -8.78227 -7.85370 -5.33200 0.22385 0.30571 1.42898 1.46178 1.52496 1.61542 1.98248 2.49195 2.69298 3.27287 3.35838 3.40911 3.60563 3.80856 3.85971 3.95009 4.02054 4.06506 4.11628 4.16699 4.24078 4.28733 4.36193 4.44222 4.46229 4.52160 4.64832 4.73051 4.77206 4.83463 4.87719 4.91119 4.97246 5.03376 5.10527 5.14763 5.18600 5.26708 5.29661 5.43230 5.47507 5.48555 5.51521 5.53784 5.62035 5.69993 6.00792 6.30006 6.46430 7.12000 7.17383 7.84013 8.26519 9.17185 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022298 B = 0.002291 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.394349 B =12219.092699 C =12504.855356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.611 5.611 3 C -0.266 4.266 4 H 0.062 0.938 5 C -0.050 4.050 6 N -0.935 5.935 7 Si 0.968 3.032 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.275 1.275 11 C 0.169 3.831 12 H 0.045 0.955 13 C -0.123 4.123 14 C -0.122 4.122 15 C 0.104 3.896 16 N -0.607 5.607 17 C 0.506 3.494 18 O -0.593 6.593 19 C -0.118 4.118 20 C -0.062 4.062 21 C -0.124 4.124 22 C -0.093 4.093 23 C -0.124 4.124 24 C -0.093 4.093 25 C -0.158 4.158 26 C 0.074 3.926 27 F -0.153 7.153 28 C 0.112 3.888 29 H 0.008 0.992 30 H 0.013 0.987 31 H 0.029 0.971 32 H 0.249 0.751 33 H 0.042 0.958 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.103 0.897 37 H 0.119 0.881 38 H 0.082 0.918 39 H 0.124 0.876 40 H 0.109 0.891 41 H 0.058 0.942 42 H 0.079 0.921 43 H 0.145 0.855 44 H 0.156 0.844 45 H 0.160 0.840 46 H 0.147 0.853 47 H 0.063 0.937 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.857 -28.291 -3.169 30.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.334 5.334 3 C -0.396 4.396 4 H 0.080 0.920 5 C -0.245 4.245 6 N -0.581 5.581 7 Si 0.796 3.204 8 H -0.209 1.209 9 H -0.216 1.216 10 H -0.200 1.200 11 C 0.061 3.939 12 H 0.063 0.937 13 C -0.163 4.163 14 C -0.161 4.161 15 C -0.017 4.017 16 N -0.339 5.339 17 C 0.296 3.704 18 O -0.474 6.474 19 C -0.158 4.158 20 C -0.099 4.099 21 C -0.125 4.125 22 C -0.111 4.111 23 C -0.142 4.142 24 C -0.111 4.111 25 C -0.177 4.177 26 C 0.055 3.945 27 F -0.132 7.132 28 C -0.013 4.013 29 H 0.027 0.973 30 H 0.032 0.968 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.122 0.878 37 H 0.137 0.863 38 H 0.100 0.900 39 H 0.142 0.858 40 H 0.127 0.873 41 H 0.077 0.923 42 H 0.097 0.903 43 H 0.163 0.837 44 H 0.173 0.827 45 H 0.177 0.823 46 H 0.165 0.835 47 H 0.081 0.919 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.772 -27.787 -3.625 30.394 hybrid contribution -0.516 1.783 -0.330 1.885 sum 11.256 -26.004 -3.955 28.610 Atomic orbital electron populations 1.20490 0.82592 0.95674 0.97657 1.44100 1.02149 1.01074 1.86058 1.19445 0.97741 0.86790 1.35673 0.92001 1.25721 0.98551 1.01595 0.98653 1.70214 1.19653 1.27528 1.40731 0.85339 0.77796 0.79609 0.77690 1.20945 1.21588 1.20046 1.20701 0.94799 0.85237 0.93162 0.93652 1.21938 1.00197 0.96450 0.97682 1.21892 1.00211 0.95147 0.98820 1.22084 1.03323 0.93861 0.82435 1.48298 1.48634 1.17815 1.19178 1.21389 0.78016 0.89325 0.81702 1.90678 1.63193 1.60448 1.33056 1.21644 1.00909 0.92426 1.00812 1.20159 0.99214 0.93276 0.97292 1.19924 0.96069 0.93600 1.02897 1.21251 0.92803 0.99570 0.97475 1.21589 1.01550 0.91675 0.99421 1.21404 0.92788 1.00555 0.96308 1.21414 0.97392 0.95865 1.02987 1.17931 0.79801 0.95214 1.01560 1.91465 1.37550 1.97029 1.87121 1.21894 0.96832 0.83248 0.99355 0.97344 0.96796 0.95310 0.94157 0.93919 0.92500 0.91667 0.87827 0.86283 0.90022 0.85824 0.87300 0.92297 0.90273 0.83695 0.82665 0.82262 0.83526 0.91925 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.14 8.03 127.77 1.03 10.17 16 2 N -0.61 -31.63 2.82 -702.32 -1.98 -33.61 16 3 C -0.27 -15.28 9.60 84.03 0.81 -14.47 16 4 H 0.06 3.53 7.81 -2.91 -0.02 3.51 16 5 C -0.05 -2.88 5.10 84.86 0.43 -2.45 16 6 N -0.93 -56.14 10.64 21.65 0.23 -55.91 16 7 Si 0.97 46.60 29.57 68.60 2.03 48.63 16 8 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 9 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 10 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 11 C 0.17 7.04 2.74 45.07 0.12 7.17 16 12 H 0.05 2.03 7.86 -2.39 -0.02 2.01 16 13 C -0.12 -4.19 5.15 30.62 0.16 -4.03 16 14 C -0.12 -2.73 6.08 30.67 0.19 -2.55 16 15 C 0.10 2.06 6.34 86.36 0.55 2.61 16 16 N -0.61 -17.78 2.97 -818.90 -2.43 -20.21 16 17 C 0.51 15.22 7.70 87.66 0.67 15.89 16 18 O -0.59 -23.72 15.39 -3.02 -0.05 -23.77 16 19 C -0.12 -2.32 4.03 29.85 0.12 -2.20 16 20 C -0.06 -1.32 4.41 29.85 0.13 -1.19 16 21 C -0.12 -2.16 5.14 -19.82 -0.10 -2.26 16 22 C -0.09 -1.19 9.68 22.26 0.22 -0.98 16 23 C -0.12 -1.14 10.04 22.27 0.22 -0.91 16 24 C -0.09 -0.83 10.04 22.26 0.22 -0.60 16 25 C -0.16 -2.05 10.03 22.31 0.22 -1.82 16 26 C 0.07 1.35 7.24 22.38 0.16 1.51 16 27 F -0.15 -3.40 16.57 44.97 0.75 -2.65 16 28 C 0.11 4.25 5.78 86.37 0.50 4.75 16 29 H 0.01 0.45 7.41 -2.39 -0.02 0.43 16 30 H 0.01 0.75 7.21 -2.38 -0.02 0.73 16 31 H 0.03 1.24 6.35 -2.39 -0.02 1.23 16 32 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 33 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.06 1.93 7.72 -2.39 -0.02 1.91 16 35 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.12 1.48 5.93 -2.39 -0.01 1.46 16 38 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.12 1.74 7.69 -2.39 -0.02 1.72 16 40 H 0.11 1.81 7.94 -2.39 -0.02 1.79 16 41 H 0.06 1.54 7.75 -2.39 -0.02 1.52 16 42 H 0.08 1.77 8.01 -2.39 -0.02 1.76 16 43 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 44 H 0.16 0.59 8.06 -2.91 -0.02 0.57 16 45 H 0.16 0.48 8.06 -2.91 -0.02 0.46 16 46 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 47 H 0.06 2.36 6.49 -2.39 -0.02 2.34 16 48 H 0.05 2.46 7.00 -2.39 -0.02 2.44 16 Total: -1.00 -75.29 384.72 5.15 -70.15 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: 0.95 Total: 8.75 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 5.65 Total: 8.63 kcal Atomic # 7 Polarization: -105.55 SS G_CDS: -4.18 Total: -109.73 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.05 Total: -23.77 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.75 Total: -2.65 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -75.29 5.15 -70.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027679585.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.370 kcal (2) G-P(sol) polarization free energy of solvation -75.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds