Wall clock time and date at job start Tue Mar 31 2020 18:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36935 * 119.99863 * 2 1 4 4 H 1.08004 * 119.99721 * 212.49478 * 3 2 1 5 5 C 1.38810 * 120.00373 * 32.49696 * 3 2 1 6 6 N 1.31625 * 119.99640 * 6.22394 * 5 3 2 7 7 Si 1.86804 * 120.00587 * 186.22515 * 5 3 2 8 8 H 1.48498 * 109.46914 * 89.99535 * 7 5 3 9 9 H 1.48498 * 109.46996 * 210.00000 * 7 5 3 10 10 H 1.48500 * 109.46791 * 329.99934 * 7 5 3 11 11 C 1.46493 * 120.00129 * 180.02562 * 2 1 3 12 12 H 1.08999 * 109.52735 * 180.02562 * 11 2 1 13 13 C 1.53045 * 109.50091 * 59.99204 * 11 2 1 14 14 C 1.53040 * 109.53683 * 178.68523 * 13 11 2 15 15 C 1.53192 * 109.31185 * 61.37074 * 14 13 11 16 16 N 1.46927 * 108.77457 * 305.35987 * 15 14 13 17 17 C 1.34773 * 120.62963 * 233.61299 * 16 15 14 18 18 O 1.21282 * 120.00485 * 354.97063 * 17 16 15 19 19 C 1.50698 * 119.99807 * 174.97629 * 17 16 15 20 20 H 1.08996 * 109.47278 * 16.04488 * 19 17 16 21 21 F 1.39901 * 109.46902 * 256.04448 * 19 17 16 22 22 C 1.53002 * 109.47655 * 136.04868 * 19 17 16 23 23 C 1.50696 * 109.47265 * 185.00062 * 22 19 17 24 24 C 1.38236 * 119.99557 * 269.71758 * 23 22 19 25 25 C 1.38242 * 119.99881 * 179.74598 * 24 23 22 26 26 C 1.38238 * 119.99324 * 0.53369 * 25 24 23 27 27 C 1.38235 * 120.00488 * 359.74523 * 26 25 24 28 28 C 1.38229 * 119.99854 * 359.97438 * 27 26 25 29 29 C 1.46926 * 118.73854 * 53.61130 * 16 15 14 30 30 H 1.08998 * 109.47160 * 265.14028 * 1 2 3 31 31 H 1.09002 * 109.46953 * 25.14047 * 1 2 3 32 32 H 1.09003 * 109.47262 * 145.13799 * 1 2 3 33 33 H 0.96992 * 119.99924 * 180.02562 * 6 5 3 34 34 H 1.08993 * 109.45943 * 298.70659 * 13 11 2 35 35 H 1.09001 * 109.45655 * 58.67042 * 13 11 2 36 36 H 1.09002 * 109.49483 * 181.32125 * 14 13 11 37 37 H 1.08998 * 109.49782 * 301.38168 * 14 13 11 38 38 H 1.08996 * 109.59037 * 65.14959 * 15 14 13 39 39 H 1.09007 * 109.58218 * 185.43204 * 15 14 13 40 40 H 1.09009 * 109.46543 * 304.99827 * 22 19 17 41 41 H 1.08995 * 109.47129 * 64.98982 * 22 19 17 42 42 H 1.07999 * 120.00100 * 0.02562 * 24 23 22 43 43 H 1.07991 * 120.00234 * 180.30118 * 25 24 23 44 44 H 1.08007 * 119.99358 * 179.77081 * 26 25 24 45 45 H 1.08000 * 120.00098 * 180.02562 * 27 26 25 46 46 H 1.08001 * 119.99924 * 179.97438 * 28 27 26 47 47 H 1.08996 * 109.58730 * 186.60400 * 29 16 15 48 48 H 1.09005 * 109.58609 * 66.17650 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1029 1.2591 -0.5025 5 6 1.6187 2.2940 0.6458 6 7 0.5199 2.1751 1.3607 7 14 2.4634 3.9538 0.5005 8 1 1.9185 4.6855 -0.6712 9 1 2.2194 4.7431 1.7344 10 1 3.9238 3.7520 0.3226 11 6 2.1975 -1.2686 -0.0006 12 1 3.2693 -1.0705 0.0000 13 6 1.8281 -2.0713 -1.2502 14 6 2.6175 -3.3823 -1.2683 15 6 2.2496 -4.2123 -0.0344 16 7 2.4654 -3.3946 1.1671 17 6 3.2362 -3.8466 2.1760 18 8 3.6850 -4.9727 2.1388 19 6 3.5405 -2.9527 3.3504 20 1 2.8455 -2.1131 3.3578 21 9 4.8504 -2.4728 3.2441 22 6 3.3929 -3.7484 4.6489 23 6 3.5765 -2.8265 5.8267 24 6 4.8353 -2.6353 6.3650 25 6 5.0046 -1.7855 7.4422 26 6 3.9134 -1.1356 7.9878 27 6 2.6538 -1.3312 7.4531 28 6 2.4854 -2.1765 6.3724 29 6 1.8249 -2.0747 1.2478 30 1 -0.3633 -0.0871 1.0239 31 1 -0.3633 0.9303 -0.4366 32 1 -0.3634 -0.8432 -0.5874 33 1 0.1486 2.9494 1.8117 34 1 0.7605 -2.2904 -1.2386 35 1 2.0697 -1.4897 -2.1399 36 1 2.3715 -3.9426 -2.1703 37 1 3.6854 -3.1641 -1.2555 38 1 1.2021 -4.5079 -0.0919 39 1 2.8785 -5.1016 0.0085 40 1 2.4000 -4.1964 4.6895 41 1 4.1476 -4.5342 4.6813 42 1 5.6872 -3.1463 5.9413 43 1 5.9887 -1.6324 7.8597 44 1 4.0451 -0.4745 8.8318 45 1 1.8013 -0.8231 7.8792 46 1 1.5012 -2.3297 5.9549 47 1 2.1751 -1.5524 2.1380 48 1 0.7426 -2.1960 1.2948 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027691464.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:18 Heat of formation + Delta-G solvation = -36.343080 kcal Electronic energy + Delta-G solvation = -29777.484381 eV Core-core repulsion = 25747.253394 eV Total energy + Delta-G solvation = -4030.230988 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -47.70398 -39.99010 -39.19722 -37.55630 -34.99440 -33.81289 -32.56649 -31.52698 -30.90457 -29.44120 -28.72468 -26.05755 -25.75002 -24.23880 -23.49020 -22.59762 -21.64705 -20.93439 -19.83227 -18.72373 -17.82991 -16.83616 -16.76308 -16.34802 -15.88007 -15.50127 -15.05991 -14.99909 -14.75372 -14.39788 -14.32300 -14.04655 -13.65128 -13.57376 -13.42938 -13.12459 -12.75553 -12.70327 -12.58318 -12.54375 -12.41837 -12.05510 -11.86443 -11.31688 -11.16022 -11.13181 -11.00989 -10.92282 -10.85987 -10.61296 -10.49824 -10.43518 -10.35365 -9.99030 -9.82865 -9.47760 -8.92650 -8.74681 -8.62744 -8.45041 -6.72591 -5.84964 -3.38596 1.28295 1.39651 2.50137 2.98876 3.33282 3.40325 3.41626 3.74597 4.24313 4.43565 4.57954 4.63934 4.77818 4.90341 4.98794 5.04844 5.10550 5.13611 5.19771 5.23990 5.36622 5.47519 5.49416 5.51693 5.61227 5.62635 5.73690 5.77311 5.84634 5.98772 6.00194 6.03611 6.07083 6.12950 6.29363 6.32822 6.43340 6.49320 6.58062 6.61459 6.70111 6.78719 6.88203 6.97643 7.24662 7.45557 7.57273 7.74695 8.11810 8.37595 9.15310 9.74224 10.28098 11.20796 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008291 B = 0.004602 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3376.294420 B = 6082.892950 C = 8527.385741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.588 5.588 3 C -0.263 4.263 4 H 0.065 0.935 5 C 0.013 3.987 6 N -0.902 5.902 7 Si 0.903 3.097 8 H -0.286 1.286 9 H -0.289 1.289 10 H -0.278 1.278 11 C 0.167 3.833 12 H 0.068 0.932 13 C -0.133 4.133 14 C -0.131 4.131 15 C 0.112 3.888 16 N -0.596 5.596 17 C 0.496 3.504 18 O -0.538 6.538 19 C 0.080 3.920 20 H 0.111 0.889 21 F -0.186 7.186 22 C -0.094 4.094 23 C -0.087 4.087 24 C -0.104 4.104 25 C -0.121 4.121 26 C -0.122 4.122 27 C -0.118 4.118 28 C -0.111 4.111 29 C 0.083 3.917 30 H 0.020 0.980 31 H 0.051 0.949 32 H -0.002 1.002 33 H 0.254 0.746 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.123 0.877 46 H 0.124 0.876 47 H 0.086 0.914 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.553 -10.939 6.972 13.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.310 5.310 3 C -0.392 4.392 4 H 0.083 0.917 5 C -0.186 4.186 6 N -0.545 5.545 7 Si 0.733 3.267 8 H -0.213 1.213 9 H -0.216 1.216 10 H -0.203 1.203 11 C 0.058 3.942 12 H 0.086 0.914 13 C -0.173 4.173 14 C -0.170 4.170 15 C -0.010 4.010 16 N -0.328 5.328 17 C 0.282 3.718 18 O -0.415 6.415 19 C 0.041 3.959 20 H 0.129 0.871 21 F -0.167 7.167 22 C -0.132 4.132 23 C -0.088 4.088 24 C -0.122 4.122 25 C -0.139 4.139 26 C -0.140 4.140 27 C -0.136 4.136 28 C -0.129 4.129 29 C -0.041 4.041 30 H 0.038 0.962 31 H 0.070 0.930 32 H 0.016 0.984 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.106 0.894 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.141 0.859 46 H 0.142 0.858 47 H 0.104 0.896 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.696 -11.353 7.032 13.624 hybrid contribution 0.333 1.228 -0.008 1.272 sum 3.029 -10.125 7.024 12.690 Atomic orbital electron populations 1.20772 0.82939 0.97312 0.97561 1.43825 1.01589 0.99922 1.85667 1.19154 1.04543 0.87393 1.28156 0.91746 1.25253 0.97778 0.99162 0.96453 1.69995 1.21612 1.29347 1.33562 0.86286 0.79426 0.83909 0.77123 1.21320 1.21557 1.20278 1.20692 0.96798 0.86273 0.90484 0.91406 1.22069 0.99699 0.95055 1.00459 1.21907 1.01087 0.97124 0.96834 1.21622 1.01358 0.94284 0.83755 1.48364 1.47926 1.19242 1.17304 1.20857 0.78999 0.87843 0.84142 1.90666 1.52310 1.19552 1.79018 1.21739 0.82269 0.97946 0.93925 0.87111 1.92882 1.37534 1.89255 1.96989 1.21012 1.05062 0.97183 0.89923 1.19687 0.93858 0.98469 0.96740 1.21084 0.96650 0.98460 0.96013 1.21133 0.98792 0.97247 0.96740 1.21167 0.92946 0.99697 1.00158 1.21143 0.97458 0.98378 0.96634 1.21103 0.98522 0.96850 0.96410 1.22900 0.97728 0.80811 1.02615 0.96213 0.92990 0.98412 0.93546 0.92180 0.91600 0.91121 0.91718 0.91516 0.89439 0.88939 0.88683 0.85925 0.86110 0.86209 0.85936 0.85824 0.89555 0.91089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.59 7.98 59.85 0.48 4.07 16 2 N -0.59 -13.67 2.78 -173.34 -0.48 -14.16 16 3 C -0.26 -6.87 9.47 -15.06 -0.14 -7.01 16 4 H 0.06 1.69 7.84 -52.48 -0.41 1.27 16 5 C 0.01 0.35 5.15 -17.43 -0.09 0.27 16 6 N -0.90 -24.91 11.03 55.49 0.61 -24.30 16 7 Si 0.90 21.18 29.56 -169.99 -5.02 16.15 16 8 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 9 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 C 0.17 3.19 2.75 -67.81 -0.19 3.01 16 12 H 0.07 1.40 7.89 -51.93 -0.41 0.99 16 13 C -0.13 -2.14 5.10 -26.69 -0.14 -2.28 16 14 C -0.13 -1.75 6.08 -26.61 -0.16 -1.91 16 15 C 0.11 1.54 6.41 -3.71 -0.02 1.51 16 16 N -0.60 -9.29 2.97 -172.76 -0.51 -9.81 16 17 C 0.50 8.09 7.04 -10.99 -0.08 8.01 16 18 O -0.54 -9.82 16.02 5.56 0.09 -9.73 16 19 C 0.08 1.21 3.39 -27.88 -0.09 1.11 16 20 H 0.11 1.67 5.33 -51.93 -0.28 1.40 16 21 F -0.19 -3.18 16.76 2.25 0.04 -3.14 16 22 C -0.09 -1.20 4.81 -27.88 -0.13 -1.33 16 23 C -0.09 -1.12 5.00 -104.63 -0.52 -1.64 16 24 C -0.10 -1.29 9.56 -39.58 -0.38 -1.67 16 25 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 26 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 27 C -0.12 -1.36 10.05 -39.59 -0.40 -1.76 16 28 C -0.11 -1.36 9.70 -39.59 -0.38 -1.74 16 29 C 0.08 1.42 5.68 -3.71 -0.02 1.40 16 30 H 0.02 0.47 7.75 -51.93 -0.40 0.07 16 31 H 0.05 1.30 7.16 -51.93 -0.37 0.92 16 32 H 0.00 -0.05 6.48 -51.93 -0.34 -0.39 16 33 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 34 H 0.06 0.95 6.75 -51.93 -0.35 0.60 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.09 1.22 7.05 -51.92 -0.37 0.85 16 40 H 0.09 1.04 8.09 -51.92 -0.42 0.62 16 41 H 0.09 1.22 7.99 -51.93 -0.41 0.81 16 42 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 43 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 44 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 45 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 46 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 47 H 0.09 1.55 5.14 -51.93 -0.27 1.29 16 48 H 0.07 1.20 7.51 -51.93 -0.39 0.81 16 LS Contribution 384.86 15.07 5.80 5.80 Total: -1.00 -29.86 384.86 -9.91 -39.77 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -7.36 Total: 2.88 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -3.07 Total: -3.47 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: -0.38 Total: -48.27 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.04 Total: -3.14 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.86 -9.91 -39.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027691464.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.427 kcal (2) G-P(sol) polarization free energy of solvation -29.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds