Wall clock time and date at job start Tue Mar 31 2020 18:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36935 * 119.99863 * 2 1 4 4 H 1.08004 * 119.99721 * 212.49478 * 3 2 1 5 5 C 1.38810 * 120.00373 * 32.49696 * 3 2 1 6 6 N 1.31625 * 119.99640 * 6.22394 * 5 3 2 7 7 Si 1.86804 * 120.00587 * 186.22515 * 5 3 2 8 8 H 1.48498 * 109.46914 * 89.99535 * 7 5 3 9 9 H 1.48498 * 109.46996 * 210.00000 * 7 5 3 10 10 H 1.48500 * 109.46791 * 329.99934 * 7 5 3 11 11 C 1.46493 * 120.00129 * 180.02562 * 2 1 3 12 12 H 1.08999 * 109.52735 * 180.02562 * 11 2 1 13 13 C 1.53045 * 109.50091 * 59.99204 * 11 2 1 14 14 C 1.53040 * 109.53683 * 178.68523 * 13 11 2 15 15 C 1.53192 * 109.31185 * 61.37074 * 14 13 11 16 16 N 1.46927 * 108.77457 * 305.35987 * 15 14 13 17 17 C 1.34773 * 120.62963 * 233.61299 * 16 15 14 18 18 O 1.21282 * 120.00485 * 354.97063 * 17 16 15 19 19 C 1.50698 * 119.99807 * 174.97629 * 17 16 15 20 20 H 1.08996 * 109.47278 * 16.04488 * 19 17 16 21 21 F 1.39901 * 109.46902 * 256.04448 * 19 17 16 22 22 C 1.53002 * 109.47655 * 136.04868 * 19 17 16 23 23 C 1.50696 * 109.47265 * 185.00062 * 22 19 17 24 24 C 1.38236 * 119.99557 * 269.71758 * 23 22 19 25 25 C 1.38242 * 119.99881 * 179.74598 * 24 23 22 26 26 C 1.38238 * 119.99324 * 0.53369 * 25 24 23 27 27 C 1.38235 * 120.00488 * 359.74523 * 26 25 24 28 28 C 1.38229 * 119.99854 * 359.97438 * 27 26 25 29 29 C 1.46926 * 118.73854 * 53.61130 * 16 15 14 30 30 H 1.08998 * 109.47160 * 265.14028 * 1 2 3 31 31 H 1.09002 * 109.46953 * 25.14047 * 1 2 3 32 32 H 1.09003 * 109.47262 * 145.13799 * 1 2 3 33 33 H 0.96992 * 119.99924 * 180.02562 * 6 5 3 34 34 H 1.08993 * 109.45943 * 298.70659 * 13 11 2 35 35 H 1.09001 * 109.45655 * 58.67042 * 13 11 2 36 36 H 1.09002 * 109.49483 * 181.32125 * 14 13 11 37 37 H 1.08998 * 109.49782 * 301.38168 * 14 13 11 38 38 H 1.08996 * 109.59037 * 65.14959 * 15 14 13 39 39 H 1.09007 * 109.58218 * 185.43204 * 15 14 13 40 40 H 1.09009 * 109.46543 * 304.99827 * 22 19 17 41 41 H 1.08995 * 109.47129 * 64.98982 * 22 19 17 42 42 H 1.07999 * 120.00100 * 0.02562 * 24 23 22 43 43 H 1.07991 * 120.00234 * 180.30118 * 25 24 23 44 44 H 1.08007 * 119.99358 * 179.77081 * 26 25 24 45 45 H 1.08000 * 120.00098 * 180.02562 * 27 26 25 46 46 H 1.08001 * 119.99924 * 179.97438 * 28 27 26 47 47 H 1.08996 * 109.58730 * 186.60400 * 29 16 15 48 48 H 1.09005 * 109.58609 * 66.17650 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1029 1.2591 -0.5025 5 6 1.6187 2.2940 0.6458 6 7 0.5199 2.1751 1.3607 7 14 2.4634 3.9538 0.5005 8 1 1.9185 4.6855 -0.6712 9 1 2.2194 4.7431 1.7344 10 1 3.9238 3.7520 0.3226 11 6 2.1975 -1.2686 -0.0006 12 1 3.2693 -1.0705 0.0000 13 6 1.8281 -2.0713 -1.2502 14 6 2.6175 -3.3823 -1.2683 15 6 2.2496 -4.2123 -0.0344 16 7 2.4654 -3.3946 1.1671 17 6 3.2362 -3.8466 2.1760 18 8 3.6850 -4.9727 2.1388 19 6 3.5405 -2.9527 3.3504 20 1 2.8455 -2.1131 3.3578 21 9 4.8504 -2.4728 3.2441 22 6 3.3929 -3.7484 4.6489 23 6 3.5765 -2.8265 5.8267 24 6 4.8353 -2.6353 6.3650 25 6 5.0046 -1.7855 7.4422 26 6 3.9134 -1.1356 7.9878 27 6 2.6538 -1.3312 7.4531 28 6 2.4854 -2.1765 6.3724 29 6 1.8249 -2.0747 1.2478 30 1 -0.3633 -0.0871 1.0239 31 1 -0.3633 0.9303 -0.4366 32 1 -0.3634 -0.8432 -0.5874 33 1 0.1486 2.9494 1.8117 34 1 0.7605 -2.2904 -1.2386 35 1 2.0697 -1.4897 -2.1399 36 1 2.3715 -3.9426 -2.1703 37 1 3.6854 -3.1641 -1.2555 38 1 1.2021 -4.5079 -0.0919 39 1 2.8785 -5.1016 0.0085 40 1 2.4000 -4.1964 4.6895 41 1 4.1476 -4.5342 4.6813 42 1 5.6872 -3.1463 5.9413 43 1 5.9887 -1.6324 7.8597 44 1 4.0451 -0.4745 8.8318 45 1 1.8013 -0.8231 7.8792 46 1 1.5012 -2.3297 5.9549 47 1 2.1751 -1.5524 2.1380 48 1 0.7426 -2.1960 1.2948 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027691464.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:17 Heat of formation + Delta-G solvation = -50.135780 kcal Electronic energy + Delta-G solvation = -29778.082478 eV Core-core repulsion = 25747.253394 eV Total energy + Delta-G solvation = -4030.829084 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.00978 -41.30265 -40.10882 -39.00820 -36.65908 -34.86263 -33.97924 -33.16405 -31.78621 -30.71048 -30.12478 -27.97417 -26.94365 -25.53025 -25.07032 -23.48717 -22.91583 -21.99896 -21.28328 -20.06295 -19.13538 -18.67294 -17.79786 -17.57478 -17.11095 -16.99090 -16.51495 -15.98740 -15.82730 -15.75892 -15.70164 -15.51744 -15.13361 -15.07738 -14.40632 -14.30267 -14.15833 -14.02872 -13.81656 -13.78387 -13.56058 -13.48222 -13.02359 -12.98663 -12.82029 -12.51980 -12.33123 -12.22217 -12.18852 -12.10546 -11.98509 -11.88172 -11.78503 -11.61789 -11.42553 -10.81601 -10.59394 -9.82712 -9.82395 -9.66191 -8.62324 -7.85921 -5.41156 0.36827 0.49549 1.18890 1.45763 1.47836 1.55336 1.74641 2.48874 2.81363 3.00668 3.30690 3.44744 3.48942 3.68093 3.76225 3.89218 3.96203 4.00341 4.09407 4.11603 4.15419 4.23296 4.29396 4.35952 4.50349 4.58937 4.60734 4.64866 4.74940 4.78250 4.81609 4.83812 4.97192 5.01782 5.09035 5.10109 5.15787 5.27523 5.37625 5.41551 5.53011 5.55279 5.61384 5.65766 5.65946 5.71060 6.10375 6.12831 6.39471 6.82042 7.17730 7.84940 8.32346 9.17009 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008291 B = 0.004602 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3376.294420 B = 6082.892950 C = 8527.385741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.603 5.603 3 C -0.270 4.270 4 H 0.059 0.941 5 C -0.034 4.034 6 N -0.926 5.926 7 Si 0.958 3.042 8 H -0.284 1.284 9 H -0.293 1.293 10 H -0.274 1.274 11 C 0.164 3.836 12 H 0.046 0.954 13 C -0.123 4.123 14 C -0.120 4.120 15 C 0.108 3.892 16 N -0.593 5.593 17 C 0.497 3.503 18 O -0.556 6.556 19 C 0.079 3.921 20 H 0.109 0.891 21 F -0.200 7.200 22 C -0.084 4.084 23 C -0.102 4.102 24 C -0.121 4.121 25 C -0.127 4.127 26 C -0.126 4.126 27 C -0.129 4.129 28 C -0.125 4.125 29 C 0.098 3.902 30 H 0.002 0.998 31 H 0.021 0.979 32 H 0.031 0.969 33 H 0.250 0.750 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.104 0.896 37 H 0.054 0.946 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.092 0.908 42 H 0.125 0.875 43 H 0.142 0.858 44 H 0.144 0.856 45 H 0.140 0.860 46 H 0.132 0.868 47 H 0.074 0.926 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.496 -11.758 6.906 13.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.325 5.325 3 C -0.400 4.400 4 H 0.076 0.924 5 C -0.231 4.231 6 N -0.571 5.571 7 Si 0.786 3.214 8 H -0.211 1.211 9 H -0.219 1.219 10 H -0.199 1.199 11 C 0.056 3.944 12 H 0.065 0.935 13 C -0.163 4.163 14 C -0.159 4.159 15 C -0.013 4.013 16 N -0.325 5.325 17 C 0.283 3.717 18 O -0.435 6.435 19 C 0.040 3.960 20 H 0.126 0.874 21 F -0.180 7.180 22 C -0.122 4.122 23 C -0.102 4.102 24 C -0.139 4.139 25 C -0.145 4.145 26 C -0.144 4.144 27 C -0.147 4.147 28 C -0.143 4.143 29 C -0.026 4.026 30 H 0.021 0.979 31 H 0.040 0.960 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.122 0.878 37 H 0.073 0.927 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.125 0.875 41 H 0.110 0.890 42 H 0.143 0.857 43 H 0.160 0.840 44 H 0.162 0.838 45 H 0.157 0.843 46 H 0.150 0.850 47 H 0.092 0.908 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.651 -12.200 6.943 14.286 hybrid contribution 0.384 1.449 -0.013 1.499 sum 3.035 -10.752 6.930 13.146 Atomic orbital electron populations 1.20535 0.82698 0.97049 0.96779 1.43962 1.01918 1.00594 1.86060 1.19360 1.04319 0.88848 1.27476 0.92351 1.25853 0.98536 1.01941 0.96739 1.70118 1.22705 1.29711 1.34587 0.85421 0.78664 0.80530 0.76747 1.21061 1.21910 1.19860 1.20793 0.95205 0.85458 0.92975 0.93530 1.21925 1.00588 0.95700 0.98041 1.21850 0.99981 0.95871 0.98183 1.21836 1.02789 0.93947 0.82760 1.48358 1.47507 1.18687 1.17932 1.20993 0.78641 0.87657 0.84417 1.90656 1.53053 1.20344 1.79492 1.21848 0.81387 0.97981 0.94763 0.87380 1.92848 1.38593 1.89489 1.97110 1.20948 1.05758 0.96769 0.88754 1.19760 0.94362 0.99072 0.97026 1.21282 0.96711 0.99130 0.96734 1.21446 1.00054 0.96698 0.96330 1.21522 0.92631 0.99630 1.00625 1.21459 0.98477 0.98250 0.96477 1.21323 0.98866 0.97169 0.96916 1.22543 0.97981 0.81209 1.00913 0.97923 0.95966 0.95066 0.94027 0.91270 0.92433 0.87812 0.92693 0.89337 0.89276 0.87540 0.88965 0.85698 0.84014 0.83844 0.84252 0.84967 0.90813 0.90378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 7.82 7.98 127.77 1.02 8.84 16 2 N -0.60 -28.01 2.78 -702.33 -1.96 -29.96 16 3 C -0.27 -14.23 9.47 84.03 0.80 -13.43 16 4 H 0.06 3.09 7.84 -2.91 -0.02 3.07 16 5 C -0.03 -1.81 5.15 84.86 0.44 -1.38 16 6 N -0.93 -51.88 11.03 21.65 0.24 -51.64 16 7 Si 0.96 43.84 29.56 68.60 2.03 45.86 16 8 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 9 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 11 C 0.16 6.17 2.75 45.07 0.12 6.30 16 12 H 0.05 1.94 7.89 -2.39 -0.02 1.92 16 13 C -0.12 -3.70 5.10 30.62 0.16 -3.55 16 14 C -0.12 -2.89 6.08 30.67 0.19 -2.71 16 15 C 0.11 2.67 6.41 86.36 0.55 3.23 16 16 N -0.59 -17.69 2.97 -818.89 -2.43 -20.13 16 17 C 0.50 15.84 7.04 87.66 0.62 16.46 16 18 O -0.56 -19.79 16.02 -3.04 -0.05 -19.84 16 19 C 0.08 2.38 3.39 29.85 0.10 2.48 16 20 H 0.11 3.31 5.33 -2.39 -0.01 3.30 16 21 F -0.20 -6.90 16.76 44.97 0.75 -6.15 16 22 C -0.08 -2.13 4.81 29.85 0.14 -1.99 16 23 C -0.10 -2.59 5.00 -19.87 -0.10 -2.68 16 24 C -0.12 -2.95 9.56 22.27 0.21 -2.74 16 25 C -0.13 -2.74 10.05 22.27 0.22 -2.51 16 26 C -0.13 -2.60 10.05 22.27 0.22 -2.37 16 27 C -0.13 -2.83 10.05 22.27 0.22 -2.60 16 28 C -0.12 -2.99 9.70 22.27 0.22 -2.78 16 29 C 0.10 3.26 5.68 86.36 0.49 3.75 16 30 H 0.00 0.12 7.75 -2.39 -0.02 0.10 16 31 H 0.02 1.10 7.16 -2.39 -0.02 1.08 16 32 H 0.03 1.17 6.48 -2.39 -0.02 1.16 16 33 H 0.25 13.70 8.31 -92.71 -0.77 12.93 16 34 H 0.07 1.97 6.75 -2.39 -0.02 1.95 16 35 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.09 2.26 7.05 -2.38 -0.02 2.24 16 40 H 0.11 2.32 8.09 -2.38 -0.02 2.31 16 41 H 0.09 2.36 7.99 -2.39 -0.02 2.34 16 42 H 0.13 2.87 8.06 -2.91 -0.02 2.85 16 43 H 0.14 2.33 8.06 -2.92 -0.02 2.30 16 44 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 45 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 46 H 0.13 2.80 8.06 -2.91 -0.02 2.78 16 47 H 0.07 2.67 5.14 -2.39 -0.01 2.66 16 48 H 0.08 2.53 7.51 -2.38 -0.02 2.51 16 Total: -1.00 -63.95 384.86 5.16 -58.80 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.95 Total: 20.74 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 5.63 Total: 2.32 kcal Atomic # 7 Polarization: -97.58 SS G_CDS: -4.15 Total: -101.73 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.05 Total: -19.84 kcal Atomic # 9 Polarization: -6.90 SS G_CDS: 0.75 Total: -6.15 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -63.95 5.16 -58.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027691464.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.660 kcal (2) G-P(sol) polarization free energy of solvation -63.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds