Wall clock time and date at job start Tue Mar 31 2020 18:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34776 * 120.00155 * 2 1 4 4 O 1.21280 * 120.00188 * 185.48606 * 3 2 1 5 5 C 1.50698 * 120.00112 * 5.47922 * 3 2 1 6 6 H 1.09010 * 107.87640 * 322.58430 * 5 3 2 7 7 C 1.51009 * 108.05087 * 79.17336 * 5 3 2 8 8 C 1.54194 * 110.79559 * 193.95106 * 7 5 3 9 9 C 1.51807 * 106.68810 * 280.83697 * 8 7 5 10 10 N 1.30313 * 127.91652 * 245.54633 * 9 8 7 11 11 N 1.29268 * 107.46261 * 180.26699 * 10 9 8 12 12 N 1.29154 * 109.43262 * 359.97438 * 11 10 9 13 13 N 1.28393 * 108.35462 * 0.02562 * 12 11 10 14 14 C 1.47655 * 127.73978 * 179.97438 * 13 12 11 15 15 C 1.50877 * 108.05392 * 205.99526 * 5 3 2 16 16 C 1.46506 * 120.00009 * 179.97438 * 2 1 3 17 17 H 1.08998 * 110.64098 * 181.68722 * 16 2 1 18 18 C 1.55151 * 110.71917 * 305.02416 * 16 2 1 19 19 C 1.54914 * 101.58178 * 153.86212 * 18 16 2 20 20 N 1.47421 * 104.83077 * 322.99369 * 19 18 16 21 21 C 1.36943 * 125.64386 * 204.09159 * 20 19 18 22 22 H 1.07998 * 119.99674 * 180.02562 * 21 20 19 23 23 C 1.38809 * 120.00103 * 0.04058 * 21 20 19 24 24 N 1.31613 * 120.00108 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99717 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46892 * 90.00196 * 25 23 21 27 27 H 1.48498 * 109.46692 * 209.99695 * 25 23 21 28 28 H 1.48490 * 109.47067 * 329.99735 * 25 23 21 29 29 C 1.47018 * 108.70660 * 24.12511 * 20 19 18 30 30 H 1.08996 * 109.47182 * 94.69364 * 1 2 3 31 31 H 1.09005 * 109.47327 * 214.69409 * 1 2 3 32 32 H 1.09000 * 109.47268 * 334.68992 * 1 2 3 33 33 H 1.08997 * 109.20032 * 314.23458 * 7 5 3 34 34 H 1.08997 * 109.19500 * 73.56748 * 7 5 3 35 35 H 1.08996 * 109.85562 * 161.68048 * 8 7 5 36 36 H 1.09002 * 110.30550 * 40.23783 * 8 7 5 37 37 H 1.09003 * 109.91793 * 233.63756 * 14 13 12 38 38 H 1.08997 * 109.91755 * 354.80723 * 14 13 12 39 39 H 1.08994 * 109.13471 * 45.27844 * 15 5 3 40 40 H 1.09000 * 109.08047 * 286.13539 * 15 5 3 41 41 H 1.08999 * 111.00587 * 271.93702 * 18 16 2 42 42 H 1.09002 * 111.00740 * 35.79033 * 18 16 2 43 43 H 1.09000 * 110.36520 * 204.14791 * 19 18 16 44 44 H 1.09003 * 110.45452 * 81.87405 * 19 18 16 45 45 H 0.97004 * 120.00567 * 180.02562 * 24 23 21 46 46 H 1.09006 * 109.88463 * 239.52774 * 29 20 19 47 47 H 1.08997 * 109.88500 * 118.36006 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3475 1.1696 -0.1004 5 6 1.3906 2.4693 0.1246 6 1 0.4603 2.3756 -0.4359 7 6 1.0418 2.6712 1.5799 8 6 -0.0102 3.7868 1.7411 9 6 0.7330 5.1060 1.6317 10 7 0.8992 6.0105 2.5549 11 7 1.5865 6.9739 2.0349 12 7 1.8564 6.6932 0.8034 13 7 1.3431 5.5491 0.5277 14 6 1.3933 4.8218 -0.7563 15 6 2.2205 3.5495 -0.5241 16 6 2.1975 -1.2688 0.0006 17 1 3.2726 -1.0917 0.0305 18 6 1.7507 -2.1600 1.1893 19 6 2.0637 -3.5780 0.6498 20 7 1.7323 -3.5173 -0.7854 21 6 1.4002 -4.5868 -1.5737 22 1 1.1737 -4.4373 -2.6190 23 6 1.3546 -5.8628 -1.0292 24 7 1.6309 -6.0449 0.2447 25 14 0.9023 -7.3216 -2.1047 26 1 2.1334 -7.8923 -2.7080 27 1 0.2305 -8.3564 -1.2783 28 1 -0.0164 -6.8757 -3.1828 29 6 1.8182 -2.1187 -1.2304 30 1 -0.3633 -0.0841 -1.0242 31 1 -0.3634 -0.8450 0.5850 32 1 -0.3634 0.9290 0.4393 33 1 0.6426 1.7414 1.9852 34 1 1.9425 2.9442 2.1298 35 1 -0.4866 3.7081 2.7183 36 1 -0.7605 3.7160 0.9535 37 1 0.3845 4.5562 -1.0724 38 1 1.8702 5.4414 -1.5156 39 1 2.5939 3.1865 -1.4817 40 1 3.0657 3.7861 0.1223 41 1 2.3372 -1.9435 2.0821 42 1 0.6849 -2.0434 1.3862 43 1 1.4429 -4.3204 1.1515 44 1 3.1194 -3.8129 0.7858 45 1 1.5994 -6.9366 0.6252 46 1 0.8540 -1.7944 -1.6220 47 1 2.5847 -2.0207 -1.9991 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033435465.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:08 Heat of formation + Delta-G solvation = 120.016289 kcal Electronic energy + Delta-G solvation = -29569.371730 eV Core-core repulsion = 25598.133706 eV Total energy + Delta-G solvation = -3971.238024 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.62504 -40.67977 -38.13328 -37.09861 -35.42595 -34.86160 -33.04382 -32.18870 -31.67676 -29.38611 -28.17475 -27.49536 -26.52712 -25.46958 -24.58499 -23.92852 -22.34556 -21.52112 -20.32714 -20.21456 -18.89010 -18.32286 -17.57878 -17.09602 -16.90452 -16.31472 -15.82072 -15.59250 -14.93650 -14.62540 -14.47064 -14.33307 -14.13387 -13.84213 -13.51879 -13.25368 -13.01570 -12.92827 -12.65638 -12.49757 -12.37320 -12.24714 -12.07072 -11.94380 -11.70901 -11.62909 -11.36630 -11.33039 -11.16827 -11.12467 -10.95553 -10.88019 -10.52670 -10.34649 -10.18637 -9.92127 -9.72362 -9.61475 -8.74463 -8.51715 -6.93985 -5.74142 -3.16778 0.98604 1.63484 1.95516 2.47323 2.86507 3.34219 3.39358 3.41115 3.45946 3.75951 3.87792 3.89985 4.24310 4.38596 4.42193 4.44504 4.52851 4.69688 4.75943 4.81483 4.99188 5.03835 5.20601 5.25018 5.25858 5.31204 5.32712 5.42655 5.44420 5.46432 5.52324 5.58987 5.62220 5.65529 5.81453 5.86854 6.09299 6.25304 6.43140 6.45433 6.58282 6.83575 7.37380 7.43252 7.53257 7.74884 8.08312 8.25946 8.32979 9.12441 9.73101 10.36588 11.29627 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.034931 B = 0.002292 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.376578 B =12212.837574 C =12391.516709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.597 5.597 3 C 0.514 3.486 4 O -0.540 6.540 5 C -0.113 4.113 6 H 0.098 0.902 7 C -0.115 4.115 8 C -0.034 4.034 9 C 0.182 3.818 10 N -0.301 5.301 11 N -0.085 5.085 12 N -0.093 5.093 13 N -0.302 5.302 14 C 0.116 3.884 15 C -0.121 4.121 16 C 0.125 3.875 17 H 0.103 0.897 18 C -0.153 4.153 19 C 0.153 3.847 20 N -0.602 5.602 21 C -0.224 4.224 22 H 0.077 0.923 23 C -0.010 4.010 24 N -0.922 5.922 25 Si 0.915 3.085 26 H -0.288 1.288 27 H -0.290 1.290 28 H -0.281 1.281 29 C 0.131 3.869 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.116 0.884 36 H 0.101 0.899 37 H 0.113 0.887 38 H 0.122 0.878 39 H 0.107 0.893 40 H 0.087 0.913 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.110 0.890 44 H 0.015 0.985 45 H 0.253 0.747 46 H 0.027 0.973 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.477 19.332 -0.023 20.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.329 5.329 3 C 0.301 3.699 4 O -0.417 6.417 5 C -0.134 4.134 6 H 0.116 0.884 7 C -0.154 4.154 8 C -0.074 4.074 9 C -0.097 4.097 10 N -0.150 5.150 11 N -0.078 5.078 12 N -0.079 5.079 13 N -0.105 5.105 14 C -0.005 4.005 15 C -0.160 4.160 16 C 0.022 3.978 17 H 0.121 0.879 18 C -0.192 4.192 19 C 0.028 3.972 20 N -0.329 5.329 21 C -0.352 4.352 22 H 0.095 0.905 23 C -0.205 4.205 24 N -0.570 5.570 25 Si 0.746 3.254 26 H -0.216 1.216 27 H -0.216 1.216 28 H -0.207 1.207 29 C 0.004 3.996 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.115 0.885 34 H 0.098 0.902 35 H 0.134 0.866 36 H 0.119 0.881 37 H 0.131 0.869 38 H 0.140 0.860 39 H 0.125 0.875 40 H 0.105 0.895 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.128 0.872 44 H 0.033 0.967 45 H 0.064 0.936 46 H 0.045 0.955 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -5.368 20.343 0.410 21.043 hybrid contribution -0.430 -1.595 -1.133 2.003 sum -5.799 18.748 -0.723 19.638 Atomic orbital electron populations 1.21927 0.79747 1.03209 1.02638 1.47867 1.07022 1.05953 1.72067 1.20422 0.87912 0.84994 0.76594 1.90718 1.14226 1.87109 1.49638 1.20766 1.00520 0.93845 0.98274 0.88383 1.21463 0.99836 0.99493 0.94572 1.20831 0.96023 0.84352 1.06239 1.26011 0.99596 1.00214 0.83869 1.74970 1.15394 0.99629 1.25015 1.78879 1.11375 1.18572 0.99015 1.78864 1.17445 0.98938 1.12637 1.48662 1.34715 1.13636 1.13514 1.22862 1.04076 0.92944 0.80575 1.21536 0.98391 0.91921 1.04159 1.22286 0.97041 0.81245 0.97201 0.87942 1.23398 1.00650 0.98795 0.96347 1.21942 0.98975 0.91764 0.84545 1.44432 1.81049 1.00733 1.06657 1.19054 1.39082 0.84972 0.92113 0.90474 1.24794 1.01887 0.97432 0.96418 1.69770 1.55337 1.20920 1.10996 0.86062 0.78010 0.82272 0.79074 1.21567 1.21593 1.20687 1.21492 0.97901 0.86313 0.93920 0.92144 0.89971 0.91037 0.88478 0.90228 0.86570 0.88080 0.86874 0.85958 0.87501 0.89485 0.92050 0.91537 0.87240 0.96719 0.93608 0.95499 0.95825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.60 8.81 59.84 0.53 1.13 16 2 N -0.60 -7.39 2.88 -171.84 -0.50 -7.89 16 3 C 0.51 6.07 6.45 -10.99 -0.07 6.00 16 4 O -0.54 -8.72 15.51 5.56 0.09 -8.63 16 5 C -0.11 -0.76 1.29 -93.84 -0.12 -0.88 16 6 H 0.10 0.38 6.18 -51.92 -0.32 0.06 16 7 C -0.11 -0.71 4.43 -27.11 -0.12 -0.83 16 8 C -0.03 -0.16 6.03 -26.71 -0.16 -0.32 16 9 C 0.18 1.61 7.09 -156.73 -1.11 0.49 16 10 N -0.30 -3.73 12.37 32.63 0.40 -3.33 16 11 N -0.08 -1.16 13.45 60.32 0.81 -0.35 16 12 N -0.09 -1.10 13.36 60.35 0.81 -0.29 16 13 N -0.30 -2.59 3.36 -57.30 -0.19 -2.78 16 14 C 0.12 0.52 6.72 -3.14 -0.02 0.50 16 15 C -0.12 -0.79 4.35 -27.53 -0.12 -0.91 16 16 C 0.13 2.09 3.36 -66.09 -0.22 1.87 16 17 H 0.10 1.91 7.01 -51.93 -0.36 1.54 16 18 C -0.15 -2.65 6.62 -24.58 -0.16 -2.81 16 19 C 0.15 3.52 5.89 -2.53 -0.01 3.50 16 20 N -0.60 -14.67 3.39 -170.07 -0.58 -15.24 16 21 C -0.22 -5.99 10.27 -15.06 -0.15 -6.15 16 22 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 23 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 24 N -0.92 -25.92 10.09 55.49 0.56 -25.36 16 25 Si 0.92 21.32 29.55 -169.99 -5.02 16.30 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 27 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 28 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 29 C 0.13 2.58 6.88 -3.07 -0.02 2.56 16 30 H 0.06 0.52 7.70 -51.93 -0.40 0.12 16 31 H 0.08 0.84 6.07 -51.93 -0.32 0.52 16 32 H 0.07 0.36 4.96 -51.93 -0.26 0.10 16 33 H 0.10 0.55 6.86 -51.93 -0.36 0.19 16 34 H 0.08 0.67 7.91 -51.93 -0.41 0.26 16 35 H 0.12 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.10 0.19 7.91 -51.93 -0.41 -0.22 16 37 H 0.11 0.17 7.88 -51.93 -0.41 -0.24 16 38 H 0.12 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.11 0.70 7.89 -51.93 -0.41 0.29 16 40 H 0.09 0.80 8.08 -51.93 -0.42 0.38 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.07 1.07 6.07 -51.93 -0.32 0.75 16 43 H 0.11 2.83 5.87 -51.93 -0.31 2.52 16 44 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 46 H 0.03 0.51 6.82 -51.93 -0.35 0.15 16 47 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 363.06 15.07 5.47 5.47 Total: -1.00 -35.12 363.06 -6.73 -41.84 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -6.71 Total: -3.54 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -1.87 Total: 3.80 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: 1.32 Total: -55.24 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.09 Total: -8.63 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.12 -6.73 -41.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033435465.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.858 kcal (2) G-P(sol) polarization free energy of solvation -35.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds