Wall clock time and date at job start Tue Mar 31 2020 18:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34776 * 120.00155 * 2 1 4 4 O 1.21280 * 120.00188 * 185.48606 * 3 2 1 5 5 C 1.50698 * 120.00112 * 5.47922 * 3 2 1 6 6 H 1.09010 * 107.87640 * 322.58430 * 5 3 2 7 7 C 1.51009 * 108.05087 * 79.17336 * 5 3 2 8 8 C 1.54194 * 110.79559 * 193.95106 * 7 5 3 9 9 C 1.51807 * 106.68810 * 280.83697 * 8 7 5 10 10 N 1.30313 * 127.91652 * 245.54633 * 9 8 7 11 11 N 1.29268 * 107.46261 * 180.26699 * 10 9 8 12 12 N 1.29154 * 109.43262 * 359.97438 * 11 10 9 13 13 N 1.28393 * 108.35462 * 0.02562 * 12 11 10 14 14 C 1.47655 * 127.73978 * 179.97438 * 13 12 11 15 15 C 1.50877 * 108.05392 * 205.99526 * 5 3 2 16 16 C 1.46506 * 120.00009 * 179.97438 * 2 1 3 17 17 H 1.08998 * 110.64098 * 181.68722 * 16 2 1 18 18 C 1.55151 * 110.71917 * 305.02416 * 16 2 1 19 19 C 1.54914 * 101.58178 * 153.86212 * 18 16 2 20 20 N 1.47421 * 104.83077 * 322.99369 * 19 18 16 21 21 C 1.36943 * 125.64386 * 204.09159 * 20 19 18 22 22 H 1.07998 * 119.99674 * 180.02562 * 21 20 19 23 23 C 1.38809 * 120.00103 * 0.04058 * 21 20 19 24 24 N 1.31613 * 120.00108 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99717 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46892 * 90.00196 * 25 23 21 27 27 H 1.48498 * 109.46692 * 209.99695 * 25 23 21 28 28 H 1.48490 * 109.47067 * 329.99735 * 25 23 21 29 29 C 1.47018 * 108.70660 * 24.12511 * 20 19 18 30 30 H 1.08996 * 109.47182 * 94.69364 * 1 2 3 31 31 H 1.09005 * 109.47327 * 214.69409 * 1 2 3 32 32 H 1.09000 * 109.47268 * 334.68992 * 1 2 3 33 33 H 1.08997 * 109.20032 * 314.23458 * 7 5 3 34 34 H 1.08997 * 109.19500 * 73.56748 * 7 5 3 35 35 H 1.08996 * 109.85562 * 161.68048 * 8 7 5 36 36 H 1.09002 * 110.30550 * 40.23783 * 8 7 5 37 37 H 1.09003 * 109.91793 * 233.63756 * 14 13 12 38 38 H 1.08997 * 109.91755 * 354.80723 * 14 13 12 39 39 H 1.08994 * 109.13471 * 45.27844 * 15 5 3 40 40 H 1.09000 * 109.08047 * 286.13539 * 15 5 3 41 41 H 1.08999 * 111.00587 * 271.93702 * 18 16 2 42 42 H 1.09002 * 111.00740 * 35.79033 * 18 16 2 43 43 H 1.09000 * 110.36520 * 204.14791 * 19 18 16 44 44 H 1.09003 * 110.45452 * 81.87405 * 19 18 16 45 45 H 0.97004 * 120.00567 * 180.02562 * 24 23 21 46 46 H 1.09006 * 109.88463 * 239.52774 * 29 20 19 47 47 H 1.08997 * 109.88500 * 118.36006 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3475 1.1696 -0.1004 5 6 1.3906 2.4693 0.1246 6 1 0.4603 2.3756 -0.4359 7 6 1.0418 2.6712 1.5799 8 6 -0.0102 3.7868 1.7411 9 6 0.7330 5.1060 1.6317 10 7 0.8992 6.0105 2.5549 11 7 1.5865 6.9739 2.0349 12 7 1.8564 6.6932 0.8034 13 7 1.3431 5.5491 0.5277 14 6 1.3933 4.8218 -0.7563 15 6 2.2205 3.5495 -0.5241 16 6 2.1975 -1.2688 0.0006 17 1 3.2726 -1.0917 0.0305 18 6 1.7507 -2.1600 1.1893 19 6 2.0637 -3.5780 0.6498 20 7 1.7323 -3.5173 -0.7854 21 6 1.4002 -4.5868 -1.5737 22 1 1.1737 -4.4373 -2.6190 23 6 1.3546 -5.8628 -1.0292 24 7 1.6309 -6.0449 0.2447 25 14 0.9023 -7.3216 -2.1047 26 1 2.1334 -7.8923 -2.7080 27 1 0.2305 -8.3564 -1.2783 28 1 -0.0164 -6.8757 -3.1828 29 6 1.8182 -2.1187 -1.2304 30 1 -0.3633 -0.0841 -1.0242 31 1 -0.3634 -0.8450 0.5850 32 1 -0.3634 0.9290 0.4393 33 1 0.6426 1.7414 1.9852 34 1 1.9425 2.9442 2.1298 35 1 -0.4866 3.7081 2.7183 36 1 -0.7605 3.7160 0.9535 37 1 0.3845 4.5562 -1.0724 38 1 1.8702 5.4414 -1.5156 39 1 2.5939 3.1865 -1.4817 40 1 3.0657 3.7861 0.1223 41 1 2.3372 -1.9435 2.0821 42 1 0.6849 -2.0434 1.3862 43 1 1.4429 -4.3204 1.1515 44 1 3.1194 -3.8129 0.7858 45 1 1.5994 -6.9366 0.6252 46 1 0.8540 -1.7944 -1.6220 47 1 2.5847 -2.0207 -1.9991 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033435465.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:07 Heat of formation + Delta-G solvation = 95.125065 kcal Electronic energy + Delta-G solvation = -29570.451095 eV Core-core repulsion = 25598.133706 eV Total energy + Delta-G solvation = -3972.317389 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -45.35009 -41.60091 -39.33664 -38.08140 -36.36426 -35.87522 -34.14688 -33.51670 -32.33877 -31.10253 -29.40326 -28.30770 -27.59076 -26.36687 -26.03296 -24.68737 -23.21919 -22.14361 -22.07138 -21.26360 -19.89933 -19.00259 -18.94359 -18.35722 -17.71619 -17.33692 -16.73797 -16.47478 -16.35121 -15.91643 -15.63374 -15.11887 -14.92027 -14.85398 -14.47231 -14.35309 -13.96058 -13.82137 -13.68196 -13.54161 -13.40132 -13.14661 -13.04071 -12.97271 -12.87374 -12.72661 -12.68190 -12.36410 -12.32668 -12.12657 -12.00927 -11.99374 -11.83450 -11.81240 -11.78582 -11.36926 -11.10575 -10.76675 -10.62451 -9.60549 -8.91317 -7.77886 -5.23364 0.29409 1.11799 1.17411 1.48206 1.49899 1.57530 1.58442 1.91589 2.50542 2.95757 3.20683 3.30915 3.32782 3.41228 3.70903 3.74595 3.83104 3.92705 3.98410 4.02040 4.13401 4.20550 4.23322 4.31582 4.36224 4.39617 4.45982 4.58604 4.66645 4.73280 4.75812 4.80801 4.84690 4.89712 4.93497 4.98763 5.05918 5.08463 5.10579 5.18827 5.33736 5.46053 5.56265 5.61042 5.78311 6.29178 6.47141 7.09343 7.15551 7.55532 7.76026 8.39028 9.23716 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.034931 B = 0.002292 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.376578 B =12212.837574 C =12391.516709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.596 5.596 3 C 0.511 3.489 4 O -0.591 6.591 5 C -0.100 4.100 6 H 0.147 0.853 7 C -0.111 4.111 8 C -0.025 4.025 9 C 0.188 3.812 10 N -0.336 5.336 11 N -0.124 5.124 12 N -0.111 5.111 13 N -0.296 5.296 14 C 0.114 3.886 15 C -0.117 4.117 16 C 0.141 3.859 17 H 0.077 0.923 18 C -0.132 4.132 19 C 0.154 3.846 20 N -0.622 5.622 21 C -0.238 4.238 22 H 0.082 0.918 23 C -0.065 4.065 24 N -0.949 5.949 25 Si 0.980 3.020 26 H -0.292 1.292 27 H -0.292 1.292 28 H -0.266 1.266 29 C 0.131 3.869 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.121 0.879 33 H 0.112 0.888 34 H 0.048 0.952 35 H 0.129 0.871 36 H 0.149 0.851 37 H 0.162 0.838 38 H 0.135 0.865 39 H 0.108 0.892 40 H 0.051 0.949 41 H 0.074 0.926 42 H 0.088 0.912 43 H 0.081 0.919 44 H -0.020 1.020 45 H 0.248 0.752 46 H 0.047 0.953 47 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.718 20.395 -1.326 22.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.327 5.327 3 C 0.300 3.700 4 O -0.471 6.471 5 C -0.121 4.121 6 H 0.165 0.835 7 C -0.150 4.150 8 C -0.065 4.065 9 C -0.091 4.091 10 N -0.186 5.186 11 N -0.117 5.117 12 N -0.097 5.097 13 N -0.100 5.100 14 C -0.004 4.004 15 C -0.156 4.156 16 C 0.036 3.964 17 H 0.095 0.905 18 C -0.171 4.171 19 C 0.029 3.971 20 N -0.349 5.349 21 C -0.367 4.367 22 H 0.100 0.900 23 C -0.257 4.257 24 N -0.598 5.598 25 Si 0.808 3.192 26 H -0.219 1.219 27 H -0.219 1.219 28 H -0.191 1.191 29 C 0.005 3.995 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.139 0.861 33 H 0.130 0.870 34 H 0.067 0.933 35 H 0.147 0.853 36 H 0.166 0.834 37 H 0.179 0.821 38 H 0.153 0.847 39 H 0.126 0.874 40 H 0.070 0.930 41 H 0.093 0.907 42 H 0.107 0.893 43 H 0.099 0.901 44 H -0.002 1.002 45 H 0.058 0.942 46 H 0.065 0.935 47 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges -8.640 21.447 -0.913 23.140 hybrid contribution 0.658 -1.964 -0.785 2.215 sum -7.981 19.483 -1.698 21.123 Atomic orbital electron populations 1.22268 0.76909 1.05457 1.03612 1.47875 1.08539 1.04311 1.71974 1.21378 0.87536 0.86193 0.74849 1.90709 1.16908 1.87851 1.51663 1.20854 1.01554 0.90228 0.99486 0.83544 1.21431 0.99285 1.00706 0.93565 1.21139 0.95676 0.80802 1.08889 1.26744 0.98618 1.00670 0.83061 1.74868 1.16412 1.00600 1.26682 1.78838 1.12910 1.20021 0.99938 1.78762 1.18010 1.00643 1.12277 1.48966 1.33580 1.12771 1.14657 1.23282 1.06549 0.91448 0.79133 1.21455 0.97742 0.92985 1.03412 1.21723 0.96355 0.83096 0.95211 0.90454 1.23172 1.02229 0.94952 0.96734 1.21718 0.96207 0.94709 0.84467 1.44706 1.80819 1.02172 1.07158 1.19425 1.38496 0.86048 0.92691 0.90047 1.25617 1.02462 0.99992 0.97678 1.70020 1.56454 1.20901 1.12454 0.85058 0.77578 0.78855 0.77704 1.21908 1.21860 1.19065 1.21595 0.98269 0.84686 0.94936 0.91242 0.91042 0.86090 0.87010 0.93335 0.85302 0.83362 0.82083 0.84655 0.87390 0.93048 0.90737 0.89335 0.90131 1.00227 0.94248 0.93488 0.97370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.74 8.81 127.77 1.13 1.86 16 2 N -0.60 -13.01 2.88 -815.97 -2.35 -15.36 16 3 C 0.51 10.85 6.45 87.66 0.57 11.41 16 4 O -0.59 -19.03 15.51 -3.03 -0.05 -19.08 16 5 C -0.10 -0.92 1.29 -12.88 -0.02 -0.94 16 6 H 0.15 -0.01 6.18 -2.38 -0.01 -0.02 16 7 C -0.11 -0.91 4.43 30.35 0.13 -0.78 16 8 C -0.03 -0.11 6.03 30.61 0.18 0.08 16 9 C 0.19 2.80 7.09 139.13 0.99 3.79 16 10 N -0.34 -8.05 12.37 -50.67 -0.63 -8.68 16 11 N -0.12 -3.40 13.45 36.91 0.50 -2.91 16 12 N -0.11 -2.53 13.36 37.02 0.49 -2.04 16 13 N -0.30 -4.33 3.36 -335.18 -1.13 -5.46 16 14 C 0.11 0.55 6.72 86.33 0.58 1.13 16 15 C -0.12 -1.21 4.35 30.08 0.13 -1.08 16 16 C 0.14 4.61 3.36 46.18 0.15 4.77 16 17 H 0.08 2.95 7.01 -2.39 -0.02 2.93 16 18 C -0.13 -4.47 6.62 31.99 0.21 -4.26 16 19 C 0.15 7.32 5.89 86.86 0.51 7.83 16 20 N -0.62 -30.68 3.39 -691.99 -2.35 -33.03 16 21 C -0.24 -12.82 10.27 84.03 0.86 -11.96 16 22 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 23 C -0.06 -3.56 5.49 84.86 0.47 -3.09 16 24 N -0.95 -54.84 10.09 21.65 0.22 -54.62 16 25 Si 0.98 44.05 29.55 68.60 2.03 46.08 16 26 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 27 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 28 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 29 C 0.13 5.13 6.88 86.73 0.60 5.72 16 30 H 0.07 0.81 7.70 -2.39 -0.02 0.79 16 31 H 0.07 1.12 6.07 -2.38 -0.01 1.11 16 32 H 0.12 0.30 4.96 -2.39 -0.01 0.29 16 33 H 0.11 0.68 6.86 -2.39 -0.02 0.66 16 34 H 0.05 0.74 7.91 -2.39 -0.02 0.72 16 35 H 0.13 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.15 -0.67 7.91 -2.39 -0.02 -0.69 16 37 H 0.16 -0.68 7.88 -2.39 -0.02 -0.70 16 38 H 0.14 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.11 1.15 7.89 -2.39 -0.02 1.13 16 40 H 0.05 0.92 8.08 -2.39 -0.02 0.91 16 41 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.09 2.63 6.07 -2.39 -0.01 2.62 16 43 H 0.08 4.31 5.87 -2.39 -0.01 4.30 16 44 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 45 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 46 H 0.05 1.66 6.82 -2.38 -0.02 1.64 16 47 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 Total: -1.00 -84.94 363.06 4.23 -80.71 By element: Atomic # 1 Polarization: -1.11 SS G_CDS: 1.00 Total: -0.12 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: 6.50 Total: 14.50 kcal Atomic # 7 Polarization: -116.85 SS G_CDS: -5.24 Total: -122.10 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.05 Total: -19.08 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -84.94 4.23 -80.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033435465.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.836 kcal (2) G-P(sol) polarization free energy of solvation -84.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds