Wall clock time and date at job start Tue Mar 31 2020 18:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47536 * 2 1 4 4 C 1.50704 * 109.46705 * 240.00649 * 2 1 3 5 5 O 1.21283 * 120.00054 * 239.99653 * 4 2 1 6 6 N 1.34775 * 120.00209 * 60.00253 * 4 2 1 7 7 C 1.46503 * 120.00106 * 180.02562 * 6 4 2 8 8 H 1.09001 * 109.46988 * 34.99517 * 7 6 4 9 9 C 1.52995 * 109.47135 * 154.99462 * 7 6 4 10 10 C 1.53001 * 109.47140 * 179.97438 * 9 7 6 11 11 C 1.53006 * 109.47217 * 300.00271 * 10 9 7 12 12 H 1.09003 * 109.46710 * 299.99881 * 11 10 9 13 13 N 1.46499 * 109.47334 * 179.97438 * 11 10 9 14 14 C 1.36936 * 120.00046 * 154.99852 * 13 11 10 15 15 H 1.08001 * 120.00259 * 0.02562 * 14 13 11 16 16 C 1.38807 * 119.99928 * 179.97438 * 14 13 11 17 17 N 1.31623 * 120.00165 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00105 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47392 * 90.00150 * 18 16 14 20 20 H 1.48498 * 109.47146 * 210.00039 * 18 16 14 21 21 H 1.48500 * 109.47231 * 330.00076 * 18 16 14 22 22 C 1.53003 * 109.46872 * 59.99635 * 11 10 9 23 23 C 1.52998 * 109.46784 * 274.99505 * 7 6 4 24 24 C 1.50694 * 109.47406 * 120.00992 * 2 1 3 25 25 C 1.38220 * 120.01674 * 59.99344 * 24 2 1 26 26 C 1.38223 * 120.02755 * 180.02562 * 25 24 2 27 27 C 1.38265 * 120.04931 * 359.97438 * 26 25 24 28 28 C 1.38168 * 120.02977 * 359.97438 * 27 26 25 29 29 C 1.38440 * 120.01195 * 240.00047 * 24 2 1 30 30 F 1.35102 * 120.02757 * 0.24616 * 29 24 2 31 31 H 1.08996 * 109.47081 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46683 * 299.99676 * 1 2 3 33 33 H 1.09000 * 109.47263 * 59.99083 * 1 2 3 34 34 H 0.97001 * 119.99924 * 359.97438 * 6 4 2 35 35 H 1.08993 * 109.47395 * 299.99995 * 9 7 6 36 36 H 1.09008 * 109.46803 * 60.00202 * 9 7 6 37 37 H 1.08997 * 109.47483 * 60.00170 * 10 9 7 38 38 H 1.09000 * 109.47388 * 180.02562 * 10 9 7 39 39 H 0.97003 * 119.99368 * 334.99801 * 13 11 10 40 40 H 0.97001 * 120.00215 * 180.02562 * 17 16 14 41 41 H 1.08997 * 109.46850 * 60.00700 * 22 11 10 42 42 H 1.09007 * 109.47008 * 180.02562 * 22 11 10 43 43 H 1.08995 * 109.47469 * 300.00208 * 23 7 6 44 44 H 1.09002 * 109.47236 * 60.00413 * 23 7 6 45 45 H 1.08000 * 119.98716 * 0.02562 * 25 24 2 46 46 H 1.08001 * 119.97168 * 180.02562 * 26 25 24 47 47 H 1.08002 * 119.98423 * 179.97438 * 27 26 25 48 48 H 1.08001 * 120.02005 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7296 -1.6964 -1.1195 6 7 1.7067 -0.2497 -2.4546 7 6 2.1945 -0.9406 -3.6509 8 1 2.2307 -2.0134 -3.4615 9 6 1.2503 -0.6610 -4.8219 10 6 1.7601 -1.3820 -6.0714 11 6 3.1627 -0.8766 -6.4153 12 1 3.1260 0.1963 -6.6044 13 7 3.6511 -1.5674 -7.6114 14 6 4.5980 -0.9764 -8.4046 15 1 4.9851 -0.0013 -8.1484 16 6 5.0611 -1.6312 -9.5376 17 7 4.5897 -2.8198 -9.8497 18 14 6.3533 -0.8254 -10.6194 19 1 7.7066 -1.2124 -10.1459 20 1 6.1732 -1.2740 -12.0234 21 1 6.2076 0.6507 -10.5488 22 6 4.1068 -1.1562 -5.2442 23 6 3.5971 -0.4357 -3.9950 24 6 2.0324 -0.7106 1.2303 25 6 1.6986 -2.0339 1.4492 26 6 2.1589 -2.6857 2.5778 27 6 2.9540 -2.0152 3.4888 28 6 3.2899 -0.6926 3.2716 29 6 2.8283 -0.0382 2.1418 30 9 3.1511 1.2568 1.9315 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 -0.3634 0.5140 -0.8899 34 1 1.1487 0.5388 -2.5435 35 1 0.2510 -1.0207 -4.5768 36 1 1.2141 0.4119 -5.0113 37 1 1.7967 -2.4548 -5.8824 38 1 1.0877 -1.1825 -6.9058 39 1 3.3036 -2.4434 -7.8413 40 1 4.9136 -3.2775 -10.6412 41 1 4.1435 -2.2290 -5.0552 42 1 5.1060 -0.7957 -5.4890 43 1 3.5609 0.6371 -4.1843 44 1 4.2698 -0.6349 -3.1608 45 1 1.0780 -2.5588 0.7381 46 1 1.8979 -3.7198 2.7478 47 1 3.3127 -2.5254 4.3705 48 1 3.9106 -0.1689 3.9835 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034757718.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:36 Heat of formation + Delta-G solvation = -67.246702 kcal Electronic energy + Delta-G solvation = -28514.879277 eV Core-core repulsion = 24483.308207 eV Total energy + Delta-G solvation = -4031.571069 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.18221 -40.52357 -39.11129 -37.89072 -34.86386 -34.59073 -32.96115 -30.86026 -30.66197 -30.39839 -29.64873 -27.33576 -25.17940 -23.70447 -23.03293 -22.48526 -22.16813 -20.89429 -20.21032 -19.35202 -17.96125 -17.46372 -16.96962 -16.72042 -16.28870 -15.79587 -15.76517 -15.23340 -14.95801 -14.50516 -14.20802 -14.09013 -13.93356 -13.70511 -13.57994 -13.40867 -13.14734 -12.84753 -12.67468 -12.53753 -12.35316 -12.26826 -12.01734 -11.80670 -11.50472 -11.41986 -11.24469 -11.00814 -10.80965 -10.75054 -10.65326 -10.16997 -10.09742 -9.84249 -9.74572 -9.56366 -9.22262 -8.97423 -8.92007 -8.82935 -6.92425 -5.74006 -3.02406 0.85191 0.95789 2.54853 3.01050 3.39906 3.45057 3.50169 3.51621 3.96434 4.08720 4.36572 4.56526 4.61179 4.69807 4.76557 4.83270 4.92661 4.99177 5.05385 5.06118 5.24650 5.29072 5.40052 5.53460 5.57333 5.61942 5.65952 5.70075 5.74262 5.76324 5.84825 5.86707 5.89159 6.04003 6.05976 6.14078 6.24732 6.27956 6.31376 6.50047 6.57913 6.60036 6.66769 6.74272 7.00645 7.16790 7.43814 7.72540 8.15550 8.44943 9.55813 10.14530 10.49050 11.48787 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022031 B = 0.002123 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.634780 B =13188.328481 C =13455.355967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.076 4.076 3 H 0.108 0.892 4 C 0.518 3.482 5 O -0.528 6.528 6 N -0.723 5.723 7 C 0.146 3.854 8 H 0.087 0.913 9 C -0.118 4.118 10 C -0.120 4.120 11 C 0.177 3.823 12 H 0.046 0.954 13 N -0.726 5.726 14 C -0.236 4.236 15 H 0.070 0.930 16 C -0.015 4.015 17 N -0.934 5.934 18 Si 0.905 3.095 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 C -0.132 4.132 23 C -0.124 4.124 24 C -0.099 4.099 25 C -0.056 4.056 26 C -0.131 4.131 27 C -0.091 4.091 28 C -0.157 4.157 29 C 0.103 3.897 30 F -0.139 7.139 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.397 0.603 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.383 0.617 40 H 0.254 0.746 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.130 0.870 46 H 0.129 0.871 47 H 0.131 0.869 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.430 5.600 27.499 30.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.097 4.097 3 H 0.126 0.874 4 C 0.303 3.697 5 O -0.404 6.404 6 N -0.374 5.374 7 C 0.042 3.958 8 H 0.105 0.895 9 C -0.157 4.157 10 C -0.159 4.159 11 C 0.067 3.933 12 H 0.064 0.936 13 N -0.366 5.366 14 C -0.367 4.367 15 H 0.088 0.912 16 C -0.211 4.211 17 N -0.582 5.582 18 Si 0.737 3.263 19 H -0.218 1.218 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.173 4.173 23 C -0.163 4.163 24 C -0.100 4.100 25 C -0.075 4.075 26 C -0.149 4.149 27 C -0.110 4.110 28 C -0.176 4.176 29 C 0.084 3.916 30 F -0.118 7.118 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.231 0.769 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.217 0.783 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.148 0.852 46 H 0.147 0.853 47 H 0.149 0.851 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.793 5.040 27.438 29.913 hybrid contribution 0.649 0.756 -0.779 1.265 sum -10.145 5.796 26.660 29.107 Atomic orbital electron populations 1.21789 0.91529 1.03234 1.03097 1.20236 0.98062 1.00702 0.90705 0.87425 1.20310 0.80372 0.84690 0.84373 1.90742 1.37089 1.26040 1.86536 1.46141 1.53545 1.32036 1.05662 1.21114 0.93988 0.97713 0.82969 0.89469 1.21746 0.97973 1.01303 0.94657 1.21751 0.98243 1.00046 0.95878 1.20238 0.90101 0.95934 0.86983 0.93626 1.42432 1.48077 1.21060 1.25017 1.19239 1.13986 1.00554 1.02953 0.91249 1.24739 1.00583 0.96904 0.98885 1.69662 1.46413 1.14173 1.27974 0.86210 0.81648 0.78445 0.80022 1.21771 1.21819 1.20812 1.22215 1.00894 0.99954 0.94221 1.21885 0.95406 1.00171 0.98842 1.19337 0.99929 0.95344 0.95395 1.20837 0.97844 0.92516 0.96260 1.21202 0.98739 1.00406 0.94567 1.21012 0.97064 0.93482 0.99397 1.21081 1.03015 0.96078 0.97443 1.17519 0.98864 0.78989 0.96253 1.91477 1.91167 1.34286 1.94873 0.91610 0.91192 0.91342 0.76894 0.91897 0.91587 0.91988 0.91367 0.78314 0.93565 0.92525 0.91848 0.92349 0.92440 0.85238 0.85299 0.85103 0.84802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 8.90 37.16 0.33 -0.54 16 2 C -0.08 -0.69 2.89 -92.92 -0.27 -0.96 16 3 H 0.11 0.91 7.13 -51.93 -0.37 0.54 16 4 C 0.52 6.18 6.99 -10.98 -0.08 6.10 16 5 O -0.53 -8.46 14.77 5.56 0.08 -8.38 16 6 N -0.72 -7.57 4.97 -53.81 -0.27 -7.83 16 7 C 0.15 1.90 2.45 -67.93 -0.17 1.73 16 8 H 0.09 1.32 7.58 -51.93 -0.39 0.93 16 9 C -0.12 -1.43 5.39 -26.73 -0.14 -1.57 16 10 C -0.12 -1.91 5.39 -26.73 -0.14 -2.05 16 11 C 0.18 3.47 2.77 -67.93 -0.19 3.28 16 12 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 13 N -0.73 -18.22 5.12 -53.42 -0.27 -18.49 16 14 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 15 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 16 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 17 N -0.93 -28.43 13.06 55.49 0.72 -27.71 16 18 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 19 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 20 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 C -0.13 -2.43 5.50 -26.75 -0.15 -2.58 16 23 C -0.12 -1.87 5.49 -26.76 -0.15 -2.01 16 24 C -0.10 -1.02 4.40 -104.56 -0.46 -1.48 16 25 C -0.06 -0.55 7.93 -39.59 -0.31 -0.86 16 26 C -0.13 -1.09 10.04 -39.58 -0.40 -1.48 16 27 C -0.09 -0.70 10.04 -39.60 -0.40 -1.10 16 28 C -0.16 -1.38 10.03 -39.52 -0.40 -1.77 16 29 C 0.10 1.08 7.25 -39.42 -0.29 0.79 16 30 F -0.14 -1.53 16.20 2.25 0.04 -1.49 16 31 H 0.06 0.42 7.39 -51.93 -0.38 0.04 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.33 7.56 -51.93 -0.39 -0.07 16 34 H 0.40 2.97 8.02 -40.82 -0.33 2.64 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.38 10.24 7.80 -40.82 -0.32 9.92 16 40 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.13 1.21 7.52 -52.49 -0.39 0.81 16 46 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 47 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 48 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 390.55 15.07 5.89 5.89 Total: -1.00 -33.26 390.55 -9.90 -43.16 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -7.62 Total: 9.05 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -3.45 Total: -11.78 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: 0.18 Total: -54.03 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.08 Total: -8.38 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.26 -9.90 -43.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034757718.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.088 kcal (2) G-P(sol) polarization free energy of solvation -33.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds