Wall clock time and date at job start Tue Mar 31 2020 18:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47536 * 2 1 4 4 C 1.50704 * 109.46705 * 240.00649 * 2 1 3 5 5 O 1.21283 * 120.00054 * 239.99653 * 4 2 1 6 6 N 1.34775 * 120.00209 * 60.00253 * 4 2 1 7 7 C 1.46503 * 120.00106 * 180.02562 * 6 4 2 8 8 H 1.09001 * 109.46988 * 34.99517 * 7 6 4 9 9 C 1.52995 * 109.47135 * 154.99462 * 7 6 4 10 10 C 1.53001 * 109.47140 * 179.97438 * 9 7 6 11 11 C 1.53006 * 109.47217 * 300.00271 * 10 9 7 12 12 H 1.09003 * 109.46710 * 299.99881 * 11 10 9 13 13 N 1.46499 * 109.47334 * 179.97438 * 11 10 9 14 14 C 1.36936 * 120.00046 * 154.99852 * 13 11 10 15 15 H 1.08001 * 120.00259 * 0.02562 * 14 13 11 16 16 C 1.38807 * 119.99928 * 179.97438 * 14 13 11 17 17 N 1.31623 * 120.00165 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00105 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47392 * 90.00150 * 18 16 14 20 20 H 1.48498 * 109.47146 * 210.00039 * 18 16 14 21 21 H 1.48500 * 109.47231 * 330.00076 * 18 16 14 22 22 C 1.53003 * 109.46872 * 59.99635 * 11 10 9 23 23 C 1.52998 * 109.46784 * 274.99505 * 7 6 4 24 24 C 1.50694 * 109.47406 * 120.00992 * 2 1 3 25 25 C 1.38220 * 120.01674 * 59.99344 * 24 2 1 26 26 C 1.38223 * 120.02755 * 180.02562 * 25 24 2 27 27 C 1.38265 * 120.04931 * 359.97438 * 26 25 24 28 28 C 1.38168 * 120.02977 * 359.97438 * 27 26 25 29 29 C 1.38440 * 120.01195 * 240.00047 * 24 2 1 30 30 F 1.35102 * 120.02757 * 0.24616 * 29 24 2 31 31 H 1.08996 * 109.47081 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46683 * 299.99676 * 1 2 3 33 33 H 1.09000 * 109.47263 * 59.99083 * 1 2 3 34 34 H 0.97001 * 119.99924 * 359.97438 * 6 4 2 35 35 H 1.08993 * 109.47395 * 299.99995 * 9 7 6 36 36 H 1.09008 * 109.46803 * 60.00202 * 9 7 6 37 37 H 1.08997 * 109.47483 * 60.00170 * 10 9 7 38 38 H 1.09000 * 109.47388 * 180.02562 * 10 9 7 39 39 H 0.97003 * 119.99368 * 334.99801 * 13 11 10 40 40 H 0.97001 * 120.00215 * 180.02562 * 17 16 14 41 41 H 1.08997 * 109.46850 * 60.00700 * 22 11 10 42 42 H 1.09007 * 109.47008 * 180.02562 * 22 11 10 43 43 H 1.08995 * 109.47469 * 300.00208 * 23 7 6 44 44 H 1.09002 * 109.47236 * 60.00413 * 23 7 6 45 45 H 1.08000 * 119.98716 * 0.02562 * 25 24 2 46 46 H 1.08001 * 119.97168 * 180.02562 * 26 25 24 47 47 H 1.08002 * 119.98423 * 179.97438 * 27 26 25 48 48 H 1.08001 * 120.02005 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7296 -1.6964 -1.1195 6 7 1.7067 -0.2497 -2.4546 7 6 2.1945 -0.9406 -3.6509 8 1 2.2307 -2.0134 -3.4615 9 6 1.2503 -0.6610 -4.8219 10 6 1.7601 -1.3820 -6.0714 11 6 3.1627 -0.8766 -6.4153 12 1 3.1260 0.1963 -6.6044 13 7 3.6511 -1.5674 -7.6114 14 6 4.5980 -0.9764 -8.4046 15 1 4.9851 -0.0013 -8.1484 16 6 5.0611 -1.6312 -9.5376 17 7 4.5897 -2.8198 -9.8497 18 14 6.3533 -0.8254 -10.6194 19 1 7.7066 -1.2124 -10.1459 20 1 6.1732 -1.2740 -12.0234 21 1 6.2076 0.6507 -10.5488 22 6 4.1068 -1.1562 -5.2442 23 6 3.5971 -0.4357 -3.9950 24 6 2.0324 -0.7106 1.2303 25 6 1.6986 -2.0339 1.4492 26 6 2.1589 -2.6857 2.5778 27 6 2.9540 -2.0152 3.4888 28 6 3.2899 -0.6926 3.2716 29 6 2.8283 -0.0382 2.1418 30 9 3.1511 1.2568 1.9315 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 -0.3634 0.5140 -0.8899 34 1 1.1487 0.5388 -2.5435 35 1 0.2510 -1.0207 -4.5768 36 1 1.2141 0.4119 -5.0113 37 1 1.7967 -2.4548 -5.8824 38 1 1.0877 -1.1825 -6.9058 39 1 3.3036 -2.4434 -7.8413 40 1 4.9136 -3.2775 -10.6412 41 1 4.1435 -2.2290 -5.0552 42 1 5.1060 -0.7957 -5.4890 43 1 3.5609 0.6371 -4.1843 44 1 4.2698 -0.6349 -3.1608 45 1 1.0780 -2.5588 0.7381 46 1 1.8979 -3.7198 2.7478 47 1 3.3127 -2.5254 4.3705 48 1 3.9106 -0.1689 3.9835 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034757718.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:35 Heat of formation + Delta-G solvation = -87.138764 kcal Electronic energy + Delta-G solvation = -28515.741861 eV Core-core repulsion = 24483.308207 eV Total energy + Delta-G solvation = -4032.433654 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -49.94829 -41.43670 -39.99888 -39.06817 -36.37331 -35.36187 -34.52792 -32.42501 -31.70007 -31.46097 -30.42780 -28.81160 -26.02518 -25.39996 -23.84905 -23.63245 -23.19904 -22.12263 -21.26032 -20.62744 -19.12488 -18.66359 -18.17661 -17.58605 -17.14707 -16.92722 -16.57666 -16.47287 -16.13331 -15.70626 -15.38089 -15.21755 -15.08837 -14.86540 -14.81472 -14.55189 -14.13096 -14.01537 -13.63492 -13.45932 -13.17761 -13.16566 -13.09322 -12.97235 -12.91343 -12.82141 -12.43018 -12.32286 -12.15998 -12.09699 -12.03784 -11.86138 -11.65908 -11.46287 -11.20611 -10.87566 -10.74549 -10.02068 -9.88615 -9.61600 -8.99912 -7.93968 -5.22065 0.17475 0.28799 1.45926 1.47792 1.55881 1.62451 2.13219 2.56067 2.70286 3.27348 3.38718 3.41537 3.65403 3.76469 3.81611 3.89951 3.94328 4.10632 4.15399 4.22569 4.29635 4.36672 4.40190 4.40230 4.44607 4.53059 4.59251 4.65192 4.77776 4.85405 4.87483 4.97366 5.00221 5.09232 5.11709 5.13266 5.18488 5.24914 5.25701 5.27330 5.40997 5.47466 5.49407 5.54694 5.55303 5.63303 5.95699 6.28967 6.58718 7.27739 7.34267 8.12048 8.34355 9.29708 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022031 B = 0.002123 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.634780 B =13188.328481 C =13455.355967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.069 4.069 3 H 0.115 0.885 4 C 0.516 3.484 5 O -0.574 6.574 6 N -0.708 5.708 7 C 0.154 3.846 8 H 0.065 0.935 9 C -0.104 4.104 10 C -0.113 4.113 11 C 0.173 3.827 12 H 0.047 0.953 13 N -0.739 5.739 14 C -0.236 4.236 15 H 0.074 0.926 16 C -0.079 4.079 17 N -0.971 5.971 18 Si 0.970 3.030 19 H -0.291 1.291 20 H -0.295 1.295 21 H -0.268 1.268 22 C -0.122 4.122 23 C -0.113 4.113 24 C -0.114 4.114 25 C -0.072 4.072 26 C -0.135 4.135 27 C -0.091 4.091 28 C -0.163 4.163 29 C 0.078 3.922 30 F -0.148 7.148 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.416 0.584 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.052 0.948 38 H 0.068 0.932 39 H 0.371 0.629 40 H 0.250 0.750 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.074 0.926 44 H 0.043 0.957 45 H 0.127 0.873 46 H 0.149 0.851 47 H 0.160 0.840 48 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.712 7.205 29.106 32.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.090 4.090 3 H 0.133 0.867 4 C 0.303 3.697 5 O -0.452 6.452 6 N -0.359 5.359 7 C 0.049 3.951 8 H 0.083 0.917 9 C -0.143 4.143 10 C -0.152 4.152 11 C 0.065 3.935 12 H 0.065 0.935 13 N -0.379 5.379 14 C -0.368 4.368 15 H 0.092 0.908 16 C -0.271 4.271 17 N -0.622 5.622 18 Si 0.800 3.200 19 H -0.218 1.218 20 H -0.222 1.222 21 H -0.193 1.193 22 C -0.163 4.163 23 C -0.152 4.152 24 C -0.115 4.115 25 C -0.091 4.091 26 C -0.153 4.153 27 C -0.108 4.108 28 C -0.181 4.181 29 C 0.059 3.941 30 F -0.126 7.126 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.254 0.746 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.203 0.797 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.093 0.907 44 H 0.062 0.938 45 H 0.145 0.855 46 H 0.167 0.833 47 H 0.178 0.822 48 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -12.111 6.716 29.086 32.214 hybrid contribution 1.064 0.232 -1.179 1.605 sum -11.046 6.948 27.907 30.807 Atomic orbital electron populations 1.21811 0.89186 1.03564 1.04633 1.20245 0.99880 1.00217 0.88681 0.86741 1.20848 0.79440 0.84093 0.85321 1.90725 1.39141 1.28174 1.87191 1.45906 1.53255 1.32326 1.04446 1.20817 0.93114 0.96681 0.84438 0.91715 1.21647 0.98612 1.02172 0.91832 1.21640 0.95752 0.99918 0.97892 1.20491 0.92281 0.95550 0.85227 0.93469 1.42678 1.47817 1.20860 1.26501 1.19615 1.13738 1.00522 1.02893 0.90783 1.25550 1.03171 0.97709 1.00699 1.69819 1.48170 1.15711 1.28493 0.85179 0.78858 0.78207 0.77792 1.21807 1.22158 1.19277 1.22018 0.99543 0.99140 0.95626 1.21754 0.96482 1.00623 0.96326 1.19539 1.00299 0.95801 0.95910 1.20972 0.98489 0.92614 0.96976 1.21540 0.98250 1.01417 0.94082 1.21379 0.96259 0.93118 1.00085 1.21398 1.02853 0.96672 0.97220 1.17803 0.99925 0.79012 0.97364 1.91447 1.91362 1.34788 1.95029 0.91883 0.90159 0.89313 0.74612 0.89024 0.89431 0.92898 0.91359 0.79705 0.94124 0.94345 0.94338 0.90695 0.93829 0.85468 0.83285 0.82193 0.83150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.37 8.90 71.98 0.64 -0.73 16 2 C -0.07 -1.16 2.89 -12.29 -0.04 -1.19 16 3 H 0.11 1.75 7.13 -2.39 -0.02 1.74 16 4 C 0.52 11.76 6.99 87.66 0.61 12.37 16 5 O -0.57 -18.45 14.77 -3.04 -0.04 -18.50 16 6 N -0.71 -13.17 4.97 -442.53 -2.20 -15.37 16 7 C 0.15 3.78 2.45 44.99 0.11 3.89 16 8 H 0.06 1.94 7.58 -2.39 -0.02 1.92 16 9 C -0.10 -2.21 5.39 30.59 0.16 -2.04 16 10 C -0.11 -3.46 5.39 30.60 0.16 -3.30 16 11 C 0.17 6.73 2.77 44.99 0.12 6.85 16 12 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 13 N -0.74 -37.80 5.12 -322.93 -1.65 -39.45 16 14 C -0.24 -13.27 9.93 84.03 0.83 -12.43 16 15 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 16 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 17 N -0.97 -60.45 13.06 21.65 0.28 -60.17 16 18 Si 0.97 46.94 29.55 68.60 2.03 48.96 16 19 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 20 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 22 C -0.12 -4.60 5.50 30.58 0.17 -4.43 16 23 C -0.11 -3.31 5.49 30.58 0.17 -3.15 16 24 C -0.11 -2.28 4.40 -19.82 -0.09 -2.37 16 25 C -0.07 -1.37 7.93 22.26 0.18 -1.19 16 26 C -0.13 -2.06 10.04 22.27 0.22 -1.84 16 27 C -0.09 -1.23 10.04 22.26 0.22 -1.00 16 28 C -0.16 -2.65 10.03 22.31 0.22 -2.43 16 29 C 0.08 1.59 7.25 22.38 0.16 1.75 16 30 F -0.15 -3.17 16.20 44.97 0.73 -2.44 16 31 H 0.06 0.70 7.39 -2.39 -0.02 0.68 16 32 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.09 0.53 7.56 -2.39 -0.02 0.51 16 34 H 0.42 4.68 8.02 -92.71 -0.74 3.94 16 35 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.37 20.45 7.80 -92.71 -0.72 19.73 16 40 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 41 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 43 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.04 1.41 8.14 -2.39 -0.02 1.40 16 45 H 0.13 2.36 7.52 -2.91 -0.02 2.34 16 46 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 47 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 48 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -74.30 390.55 2.99 -71.31 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: -0.50 Total: 31.07 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: 4.34 Total: -15.42 kcal Atomic # 7 Polarization: -111.42 SS G_CDS: -3.57 Total: -114.99 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.04 Total: -18.50 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.73 Total: -2.44 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.96 kcal Total: -74.30 2.99 -71.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034757718.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.825 kcal (2) G-P(sol) polarization free energy of solvation -74.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds