Wall clock time and date at job start Tue Mar 31 2020 18:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47213 * 2 1 4 4 C 1.50699 * 109.46958 * 120.00086 * 2 1 3 5 5 O 1.21282 * 119.99919 * 120.00017 * 4 2 1 6 6 N 1.34772 * 120.00284 * 299.99353 * 4 2 1 7 7 C 1.46504 * 120.00473 * 180.02562 * 6 4 2 8 8 H 1.09001 * 109.46425 * 35.00203 * 7 6 4 9 9 C 1.52998 * 109.47201 * 155.00351 * 7 6 4 10 10 C 1.53000 * 109.47154 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47252 * 300.00272 * 10 9 7 12 12 H 1.08997 * 109.46857 * 300.00181 * 11 10 9 13 13 N 1.46490 * 109.47311 * 179.97438 * 11 10 9 14 14 C 1.36935 * 120.00121 * 154.99465 * 13 11 10 15 15 H 1.07997 * 120.00139 * 0.02562 * 14 13 11 16 16 C 1.38816 * 120.00401 * 180.02562 * 14 13 11 17 17 N 1.31624 * 119.99569 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00172 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.46685 * 269.99637 * 18 16 14 20 20 H 1.48494 * 109.47357 * 29.99716 * 18 16 14 21 21 H 1.48502 * 109.47120 * 150.00435 * 18 16 14 22 22 C 1.53002 * 109.47269 * 59.99419 * 11 10 9 23 23 C 1.53000 * 109.47458 * 300.00455 * 22 11 10 24 24 C 1.50705 * 109.47087 * 240.00054 * 2 1 3 25 25 C 1.38219 * 120.01014 * 300.00155 * 24 2 1 26 26 C 1.38225 * 120.02495 * 179.97438 * 25 24 2 27 27 C 1.38267 * 120.04850 * 0.02562 * 26 25 24 28 28 C 1.38178 * 120.02626 * 0.02562 * 27 26 25 29 29 C 1.38436 * 120.00980 * 119.72495 * 24 2 1 30 30 F 1.35098 * 120.02856 * 359.97438 * 29 24 2 31 31 H 1.09001 * 109.47213 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46804 * 300.00000 * 1 2 3 33 33 H 1.08998 * 109.47103 * 59.99748 * 1 2 3 34 34 H 0.97008 * 119.99929 * 0.02562 * 6 4 2 35 35 H 1.08997 * 109.46869 * 59.99940 * 9 7 6 36 36 H 1.08996 * 109.47293 * 300.00525 * 9 7 6 37 37 H 1.08993 * 109.47268 * 180.02562 * 10 9 7 38 38 H 1.09007 * 109.46865 * 59.99984 * 10 9 7 39 39 H 0.97000 * 120.00577 * 335.00065 * 13 11 10 40 40 H 0.97001 * 119.99885 * 359.97438 * 17 16 14 41 41 H 1.09007 * 109.46938 * 60.00233 * 22 11 10 42 42 H 1.08996 * 109.47299 * 179.97438 * 22 11 10 43 43 H 1.08996 * 109.46870 * 300.00256 * 23 22 11 44 44 H 1.08993 * 109.47268 * 179.97438 * 23 22 11 45 45 H 1.07997 * 119.98941 * 359.97438 * 25 24 2 46 46 H 1.08000 * 119.97515 * 180.02562 * 26 25 24 47 47 H 1.08001 * 119.98292 * 179.97438 * 27 26 25 48 48 H 1.08004 * 120.01091 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1192 6 7 1.7068 -0.2500 2.4545 7 6 2.1956 -0.9403 3.6508 8 1 3.1949 -1.3321 3.4612 9 6 2.2469 0.0430 4.8218 10 6 2.7579 -0.6777 6.0709 11 6 1.8149 -1.8323 6.4153 12 1 0.8155 -1.4408 6.6050 13 7 2.3045 -2.5228 7.6109 14 6 1.4326 -3.2191 8.4047 15 1 0.3841 -3.2596 8.1491 16 6 1.8964 -3.8730 9.5380 17 7 3.1742 -3.8232 9.8498 18 14 0.7072 -4.8235 10.6204 19 1 0.1618 -3.9220 11.6670 20 1 -0.4063 -5.3487 9.7901 21 1 1.4207 -5.9552 11.2648 22 6 1.7635 -2.8155 5.2442 23 6 1.2525 -2.0948 3.9951 24 6 2.0324 -0.7104 -1.2305 25 6 1.6985 -2.0337 -1.4495 26 6 2.1587 -2.6854 -2.5783 27 6 2.9537 -2.0147 -3.4892 28 6 3.2896 -0.6921 -3.2718 29 6 2.8236 -0.0362 -2.1448 30 9 3.1454 1.2590 -1.9348 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.1489 0.5386 2.5436 35 1 1.2476 0.4348 5.0112 36 1 2.9190 0.8653 4.5767 37 1 2.7940 0.0226 6.9053 38 1 3.7574 -1.0693 5.8812 39 1 3.2462 -2.4867 7.8404 40 1 3.7918 -3.3299 9.2875 41 1 2.7630 -3.2070 5.0544 42 1 1.0920 -3.6383 5.4896 43 1 0.2531 -1.7032 4.1849 44 1 1.2163 -2.7951 3.1607 45 1 1.0780 -2.5587 -0.7384 46 1 1.8970 -3.7193 -2.7488 47 1 3.3130 -2.5251 -4.3706 48 1 3.9109 -0.1686 -3.9834 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034757722.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:40 Heat of formation + Delta-G solvation = -67.129805 kcal Electronic energy + Delta-G solvation = -28567.509072 eV Core-core repulsion = 24535.943071 eV Total energy + Delta-G solvation = -4031.566000 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.21528 -40.55995 -39.14808 -37.96379 -35.03222 -34.61731 -33.19202 -30.86798 -30.61575 -30.47492 -29.62866 -27.17029 -25.16077 -23.58340 -23.06498 -22.55222 -22.22927 -21.04838 -20.22513 -19.45176 -17.99397 -17.49784 -17.14939 -16.78554 -16.30769 -15.84838 -15.80113 -15.25826 -15.12074 -14.51636 -14.14106 -14.12846 -13.93998 -13.83080 -13.58753 -13.48917 -13.43266 -13.01502 -12.66148 -12.57951 -12.37948 -12.32695 -12.10805 -11.86620 -11.54346 -11.34829 -11.24250 -11.12197 -10.82087 -10.72525 -10.43966 -10.16206 -10.00186 -9.94867 -9.80552 -9.24264 -9.14368 -9.00952 -8.94168 -8.84929 -7.00446 -6.07762 -3.07227 0.83061 0.93869 2.51052 2.97432 3.37656 3.52281 3.57362 3.71372 3.93740 4.06525 4.33856 4.54354 4.67232 4.68903 4.74817 4.80605 4.87128 4.97375 4.99300 5.04071 5.19765 5.23883 5.38459 5.51572 5.54451 5.55665 5.63339 5.65199 5.67550 5.74557 5.79543 5.80647 5.82881 5.95512 6.04422 6.12666 6.16025 6.20076 6.23215 6.38202 6.48689 6.56542 6.58130 6.65223 6.91924 7.07722 7.39586 7.83784 8.11650 8.78227 9.26079 10.12382 10.27653 11.40854 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.024160 B = 0.002116 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.655421 B =13228.694095 C =13618.164009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.075 4.075 3 H 0.107 0.893 4 C 0.518 3.482 5 O -0.528 6.528 6 N -0.723 5.723 7 C 0.145 3.855 8 H 0.087 0.913 9 C -0.118 4.118 10 C -0.122 4.122 11 C 0.183 3.817 12 H 0.047 0.953 13 N -0.737 5.737 14 C -0.328 4.328 15 H 0.064 0.936 16 C -0.047 4.047 17 N -0.945 5.945 18 Si 1.082 2.918 19 H -0.296 1.296 20 H -0.295 1.295 21 H -0.288 1.288 22 C -0.131 4.131 23 C -0.122 4.122 24 C -0.099 4.099 25 C -0.056 4.056 26 C -0.130 4.130 27 C -0.091 4.091 28 C -0.157 4.157 29 C 0.102 3.898 30 F -0.140 7.140 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.397 0.603 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.366 0.634 40 H 0.255 0.745 41 H 0.054 0.946 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.130 0.870 46 H 0.129 0.871 47 H 0.131 0.869 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.821 10.575 -27.757 30.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.096 4.096 3 H 0.125 0.875 4 C 0.303 3.697 5 O -0.404 6.404 6 N -0.374 5.374 7 C 0.042 3.958 8 H 0.105 0.895 9 C -0.157 4.157 10 C -0.161 4.161 11 C 0.073 3.927 12 H 0.065 0.935 13 N -0.379 5.379 14 C -0.459 4.459 15 H 0.082 0.918 16 C -0.245 4.245 17 N -0.591 5.591 18 Si 0.913 3.087 19 H -0.224 1.224 20 H -0.222 1.222 21 H -0.214 1.214 22 C -0.172 4.172 23 C -0.161 4.161 24 C -0.100 4.100 25 C -0.074 4.074 26 C -0.149 4.149 27 C -0.110 4.110 28 C -0.176 4.176 29 C 0.083 3.917 30 F -0.119 7.119 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.231 0.769 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.199 0.801 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.148 0.852 46 H 0.147 0.853 47 H 0.149 0.851 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.664 8.950 -26.457 28.317 hybrid contribution 0.253 1.555 -1.292 2.038 sum -4.410 10.505 -27.749 29.997 Atomic orbital electron populations 1.21795 0.91461 1.03341 1.03105 1.20232 0.98117 1.00624 0.90670 0.87460 1.20321 0.80325 0.84710 0.84369 1.90741 1.37246 1.25880 1.86538 1.46130 1.53670 1.31956 1.05635 1.21106 0.98948 0.92756 0.83008 0.89533 1.21736 1.01810 0.97567 0.94570 1.21769 0.99922 0.98329 0.96032 1.20167 0.95796 0.90086 0.86641 0.93506 1.42446 1.07731 1.61631 1.26100 1.20061 0.91503 1.27993 1.06369 0.91804 1.25759 0.99884 1.01048 0.97783 1.70844 1.02349 1.44946 1.40970 0.83206 0.73808 0.76241 0.75446 1.22369 1.22204 1.21414 1.22199 1.01063 0.99725 0.94243 1.21876 0.98563 0.96944 0.98731 1.19335 1.00026 0.95316 0.95344 1.20854 0.97764 0.92537 0.96285 1.21213 0.98671 1.00442 0.94525 1.21019 0.97066 0.93490 0.99376 1.21078 1.02983 0.96050 0.97508 1.17507 0.98983 0.78920 0.96291 1.91471 1.91197 1.34301 1.94883 0.91545 0.91335 0.91157 0.76863 0.91506 0.91838 0.91448 0.92118 0.80077 0.93350 0.92691 0.91781 0.92287 0.92357 0.85202 0.85261 0.85081 0.84804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 8.90 37.16 0.33 -0.59 16 2 C -0.08 -0.68 2.89 -92.92 -0.27 -0.95 16 3 H 0.11 0.88 7.13 -51.93 -0.37 0.51 16 4 C 0.52 6.18 6.99 -10.99 -0.08 6.11 16 5 O -0.53 -8.46 14.77 5.56 0.08 -8.38 16 6 N -0.72 -7.58 4.97 -53.80 -0.27 -7.84 16 7 C 0.15 1.90 2.45 -67.93 -0.17 1.74 16 8 H 0.09 1.34 7.58 -51.93 -0.39 0.95 16 9 C -0.12 -1.46 5.39 -26.73 -0.14 -1.60 16 10 C -0.12 -1.95 5.39 -26.73 -0.14 -2.09 16 11 C 0.18 3.60 2.77 -67.93 -0.19 3.41 16 12 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 13 N -0.74 -18.51 5.12 -53.43 -0.27 -18.79 16 14 C -0.33 -9.25 9.93 -15.06 -0.15 -9.40 16 15 H 0.06 1.78 7.83 -52.49 -0.41 1.37 16 16 C -0.05 -1.39 5.50 -17.43 -0.10 -1.48 16 17 N -0.95 -29.54 13.70 55.49 0.76 -28.78 16 18 Si 1.08 26.21 29.92 -169.99 -5.09 21.12 16 19 H -0.30 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.30 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 C -0.13 -2.41 5.50 -26.73 -0.15 -2.56 16 23 C -0.12 -1.79 5.50 -26.73 -0.15 -1.93 16 24 C -0.10 -1.02 4.40 -104.55 -0.46 -1.48 16 25 C -0.06 -0.56 7.93 -39.59 -0.31 -0.87 16 26 C -0.13 -1.10 10.04 -39.58 -0.40 -1.50 16 27 C -0.09 -0.70 10.04 -39.59 -0.40 -1.10 16 28 C -0.16 -1.35 10.03 -39.51 -0.40 -1.75 16 29 C 0.10 1.05 7.25 -39.42 -0.29 0.76 16 30 F -0.14 -1.49 16.19 2.25 0.04 -1.45 16 31 H 0.07 0.47 7.39 -51.93 -0.38 0.08 16 32 H 0.07 0.35 7.56 -51.93 -0.39 -0.04 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.40 2.98 8.02 -40.82 -0.33 2.65 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 39 H 0.37 9.53 6.63 -40.82 -0.27 9.26 16 40 H 0.26 7.85 6.77 -40.82 -0.28 7.58 16 41 H 0.05 1.07 8.14 -51.92 -0.42 0.64 16 42 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.13 1.27 7.52 -52.49 -0.39 0.87 16 46 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 47 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 48 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 LS Contribution 388.85 15.07 5.86 5.86 Total: -1.00 -34.20 388.85 -9.84 -44.05 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -7.51 Total: 9.49 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: -3.45 Total: -15.29 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: 0.22 Total: -55.41 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.08 Total: -8.38 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 26.21 SS G_CDS: -5.09 Total: 21.12 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.20 -9.84 -44.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034757722.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.084 kcal (2) G-P(sol) polarization free energy of solvation -34.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds