Wall clock time and date at job start Tue Mar 31 2020 18:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47213 * 2 1 4 4 C 1.50699 * 109.46958 * 120.00086 * 2 1 3 5 5 O 1.21282 * 119.99919 * 120.00017 * 4 2 1 6 6 N 1.34772 * 120.00284 * 299.99353 * 4 2 1 7 7 C 1.46504 * 120.00473 * 180.02562 * 6 4 2 8 8 H 1.09001 * 109.46425 * 35.00203 * 7 6 4 9 9 C 1.52998 * 109.47201 * 155.00351 * 7 6 4 10 10 C 1.53000 * 109.47154 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47252 * 300.00272 * 10 9 7 12 12 H 1.08997 * 109.46857 * 300.00181 * 11 10 9 13 13 N 1.46490 * 109.47311 * 179.97438 * 11 10 9 14 14 C 1.36935 * 120.00121 * 154.99465 * 13 11 10 15 15 H 1.07997 * 120.00139 * 0.02562 * 14 13 11 16 16 C 1.38816 * 120.00401 * 180.02562 * 14 13 11 17 17 N 1.31624 * 119.99569 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00172 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.46685 * 269.99637 * 18 16 14 20 20 H 1.48494 * 109.47357 * 29.99716 * 18 16 14 21 21 H 1.48502 * 109.47120 * 150.00435 * 18 16 14 22 22 C 1.53002 * 109.47269 * 59.99419 * 11 10 9 23 23 C 1.53000 * 109.47458 * 300.00455 * 22 11 10 24 24 C 1.50705 * 109.47087 * 240.00054 * 2 1 3 25 25 C 1.38219 * 120.01014 * 300.00155 * 24 2 1 26 26 C 1.38225 * 120.02495 * 179.97438 * 25 24 2 27 27 C 1.38267 * 120.04850 * 0.02562 * 26 25 24 28 28 C 1.38178 * 120.02626 * 0.02562 * 27 26 25 29 29 C 1.38436 * 120.00980 * 119.72495 * 24 2 1 30 30 F 1.35098 * 120.02856 * 359.97438 * 29 24 2 31 31 H 1.09001 * 109.47213 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46804 * 300.00000 * 1 2 3 33 33 H 1.08998 * 109.47103 * 59.99748 * 1 2 3 34 34 H 0.97008 * 119.99929 * 0.02562 * 6 4 2 35 35 H 1.08997 * 109.46869 * 59.99940 * 9 7 6 36 36 H 1.08996 * 109.47293 * 300.00525 * 9 7 6 37 37 H 1.08993 * 109.47268 * 180.02562 * 10 9 7 38 38 H 1.09007 * 109.46865 * 59.99984 * 10 9 7 39 39 H 0.97000 * 120.00577 * 335.00065 * 13 11 10 40 40 H 0.97001 * 119.99885 * 359.97438 * 17 16 14 41 41 H 1.09007 * 109.46938 * 60.00233 * 22 11 10 42 42 H 1.08996 * 109.47299 * 179.97438 * 22 11 10 43 43 H 1.08996 * 109.46870 * 300.00256 * 23 22 11 44 44 H 1.08993 * 109.47268 * 179.97438 * 23 22 11 45 45 H 1.07997 * 119.98941 * 359.97438 * 25 24 2 46 46 H 1.08000 * 119.97515 * 180.02562 * 26 25 24 47 47 H 1.08001 * 119.98292 * 179.97438 * 27 26 25 48 48 H 1.08004 * 120.01091 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1192 6 7 1.7068 -0.2500 2.4545 7 6 2.1956 -0.9403 3.6508 8 1 3.1949 -1.3321 3.4612 9 6 2.2469 0.0430 4.8218 10 6 2.7579 -0.6777 6.0709 11 6 1.8149 -1.8323 6.4153 12 1 0.8155 -1.4408 6.6050 13 7 2.3045 -2.5228 7.6109 14 6 1.4326 -3.2191 8.4047 15 1 0.3841 -3.2596 8.1491 16 6 1.8964 -3.8730 9.5380 17 7 3.1742 -3.8232 9.8498 18 14 0.7072 -4.8235 10.6204 19 1 0.1618 -3.9220 11.6670 20 1 -0.4063 -5.3487 9.7901 21 1 1.4207 -5.9552 11.2648 22 6 1.7635 -2.8155 5.2442 23 6 1.2525 -2.0948 3.9951 24 6 2.0324 -0.7104 -1.2305 25 6 1.6985 -2.0337 -1.4495 26 6 2.1587 -2.6854 -2.5783 27 6 2.9537 -2.0147 -3.4892 28 6 3.2896 -0.6921 -3.2718 29 6 2.8236 -0.0362 -2.1448 30 9 3.1454 1.2590 -1.9348 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.1489 0.5386 2.5436 35 1 1.2476 0.4348 5.0112 36 1 2.9190 0.8653 4.5767 37 1 2.7940 0.0226 6.9053 38 1 3.7574 -1.0693 5.8812 39 1 3.2462 -2.4867 7.8404 40 1 3.7918 -3.3299 9.2875 41 1 2.7630 -3.2070 5.0544 42 1 1.0920 -3.6383 5.4896 43 1 0.2531 -1.7032 4.1849 44 1 1.2163 -2.7951 3.1607 45 1 1.0780 -2.5587 -0.7384 46 1 1.8970 -3.7193 -2.7488 47 1 3.3130 -2.5251 -4.3706 48 1 3.9109 -0.1686 -3.9834 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034757722.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:39 Heat of formation + Delta-G solvation = -87.758765 kcal Electronic energy + Delta-G solvation = -28568.403611 eV Core-core repulsion = 24535.943071 eV Total energy + Delta-G solvation = -4032.460539 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.180 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -49.96311 -41.48046 -40.05230 -39.14251 -36.62179 -35.40416 -34.70216 -32.31407 -31.78125 -31.47730 -30.42154 -28.67185 -25.98169 -25.40676 -23.92773 -23.67317 -23.28480 -22.25762 -21.29315 -20.68705 -19.34719 -18.69320 -18.25045 -17.65227 -17.15073 -17.04311 -16.58784 -16.45175 -16.07827 -15.93662 -15.44851 -15.32926 -15.14349 -15.08628 -14.82964 -14.58985 -14.15882 -14.07266 -13.72880 -13.48620 -13.21944 -13.17333 -13.05347 -12.98524 -12.91867 -12.72535 -12.37176 -12.27817 -12.13107 -12.10666 -11.89492 -11.87041 -11.54176 -11.49534 -11.12958 -10.89046 -10.77347 -10.07161 -9.90688 -9.63701 -9.11342 -8.38757 -5.32109 0.15455 0.26778 1.56994 1.58529 1.68174 1.81955 2.08800 2.67740 2.71480 3.24965 3.38818 3.39878 3.58838 3.68858 3.72266 3.79956 3.89744 4.07408 4.12301 4.18876 4.20945 4.28195 4.29532 4.38149 4.42380 4.44743 4.50827 4.56201 4.74209 4.76558 4.83598 4.88964 4.95297 5.03950 5.06944 5.07451 5.15343 5.15785 5.18765 5.22936 5.38879 5.42523 5.45937 5.48659 5.54238 5.61929 5.93680 6.49852 6.54413 7.10834 7.23630 8.01256 8.13017 9.13383 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.024160 B = 0.002116 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.655421 B =13228.694095 C =13618.164009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.068 4.068 3 H 0.118 0.882 4 C 0.516 3.484 5 O -0.573 6.573 6 N -0.708 5.708 7 C 0.154 3.846 8 H 0.061 0.939 9 C -0.105 4.105 10 C -0.114 4.114 11 C 0.178 3.822 12 H 0.047 0.953 13 N -0.752 5.752 14 C -0.325 4.325 15 H 0.066 0.934 16 C -0.110 4.110 17 N -0.978 5.978 18 Si 1.129 2.871 19 H -0.283 1.283 20 H -0.274 1.274 21 H -0.295 1.295 22 C -0.122 4.122 23 C -0.109 4.109 24 C -0.114 4.114 25 C -0.074 4.074 26 C -0.136 4.136 27 C -0.090 4.090 28 C -0.161 4.161 29 C 0.080 3.920 30 F -0.146 7.146 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.417 0.583 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.051 0.949 39 H 0.357 0.643 40 H 0.243 0.757 41 H 0.035 0.965 42 H 0.038 0.962 43 H 0.078 0.922 44 H 0.050 0.950 45 H 0.124 0.876 46 H 0.148 0.852 47 H 0.161 0.839 48 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.456 12.007 -29.477 32.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.089 4.089 3 H 0.136 0.864 4 C 0.303 3.697 5 O -0.452 6.452 6 N -0.359 5.359 7 C 0.049 3.951 8 H 0.079 0.921 9 C -0.144 4.144 10 C -0.153 4.153 11 C 0.070 3.930 12 H 0.065 0.935 13 N -0.394 5.394 14 C -0.456 4.456 15 H 0.084 0.916 16 C -0.301 4.301 17 N -0.627 5.627 18 Si 0.954 3.046 19 H -0.209 1.209 20 H -0.199 1.199 21 H -0.222 1.222 22 C -0.163 4.163 23 C -0.148 4.148 24 C -0.115 4.115 25 C -0.092 4.092 26 C -0.154 4.154 27 C -0.108 4.108 28 C -0.180 4.180 29 C 0.061 3.939 30 F -0.125 7.125 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.100 0.900 34 H 0.254 0.746 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.189 0.811 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.096 0.904 44 H 0.068 0.932 45 H 0.142 0.858 46 H 0.165 0.835 47 H 0.179 0.821 48 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.346 10.449 -28.228 30.762 hybrid contribution 0.781 1.096 -0.861 1.597 sum -5.565 11.544 -29.089 31.787 Atomic orbital electron populations 1.21816 0.89418 1.03432 1.04643 1.20240 0.99673 1.00357 0.88639 0.86403 1.20862 0.79397 0.84115 0.85311 1.90725 1.39290 1.28018 1.87186 1.45895 1.53477 1.32163 1.04408 1.20800 0.97238 0.92653 0.84400 0.92121 1.21644 1.03560 0.97269 0.91889 1.21653 0.98630 0.97031 0.97986 1.20427 0.96508 0.91078 0.85023 0.93532 1.42711 1.07070 1.62002 1.27570 1.20393 0.91989 1.27000 1.06236 0.91583 1.27203 1.00544 1.02484 0.99824 1.70960 1.03344 1.46703 1.41679 0.82601 0.72529 0.75015 0.74443 1.20938 1.19910 1.22157 1.22001 0.99553 0.99002 0.95700 1.21732 0.99698 0.97140 0.96247 1.19522 1.00443 0.95680 0.95905 1.20957 0.98494 0.92759 0.96990 1.21531 0.98325 1.01387 0.94114 1.21382 0.96195 0.93189 1.00001 1.21406 1.02747 0.96563 0.97285 1.17760 0.99878 0.78972 0.97277 1.91446 1.91352 1.34670 1.95018 0.92176 0.89422 0.90004 0.74575 0.89197 0.89384 0.91539 0.93057 0.81100 0.94632 0.94574 0.94287 0.90386 0.93159 0.85812 0.83460 0.82144 0.82973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.90 71.98 0.64 -0.85 16 2 C -0.07 -1.13 2.89 -12.28 -0.04 -1.17 16 3 H 0.12 1.71 7.13 -2.39 -0.02 1.69 16 4 C 0.52 11.76 6.99 87.66 0.61 12.37 16 5 O -0.57 -18.46 14.77 -3.04 -0.04 -18.51 16 6 N -0.71 -13.21 4.97 -442.53 -2.20 -15.41 16 7 C 0.15 3.80 2.45 44.99 0.11 3.91 16 8 H 0.06 1.87 7.58 -2.39 -0.02 1.85 16 9 C -0.11 -2.30 5.39 30.59 0.16 -2.14 16 10 C -0.11 -3.56 5.39 30.59 0.16 -3.39 16 11 C 0.18 6.98 2.77 44.99 0.12 7.11 16 12 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 13 N -0.75 -38.58 5.12 -322.96 -1.65 -40.23 16 14 C -0.32 -18.49 9.93 84.03 0.83 -17.65 16 15 H 0.07 3.66 7.83 -2.91 -0.02 3.64 16 16 C -0.11 -6.50 5.50 84.86 0.47 -6.03 16 17 N -0.98 -62.56 13.70 21.65 0.30 -62.27 16 18 Si 1.13 52.87 29.92 68.60 2.05 54.93 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 20 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 21 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 22 C -0.12 -4.55 5.50 30.59 0.17 -4.38 16 23 C -0.11 -3.09 5.50 30.59 0.17 -2.93 16 24 C -0.11 -2.28 4.40 -19.82 -0.09 -2.36 16 25 C -0.07 -1.44 7.93 22.26 0.18 -1.26 16 26 C -0.14 -2.13 10.04 22.27 0.22 -1.90 16 27 C -0.09 -1.21 10.04 22.26 0.22 -0.98 16 28 C -0.16 -2.54 10.03 22.31 0.22 -2.31 16 29 C 0.08 1.58 7.25 22.38 0.16 1.74 16 30 F -0.15 -2.98 16.19 44.97 0.73 -2.25 16 31 H 0.06 0.75 7.39 -2.39 -0.02 0.73 16 32 H 0.09 0.61 7.56 -2.39 -0.02 0.59 16 33 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.42 4.70 8.02 -92.70 -0.74 3.96 16 35 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 39 H 0.36 19.30 6.63 -92.71 -0.61 18.68 16 40 H 0.24 15.54 6.77 -92.71 -0.63 14.91 16 41 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 42 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.12 2.46 7.52 -2.91 -0.02 2.44 16 46 H 0.15 1.66 8.06 -2.91 -0.02 1.63 16 47 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 48 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -76.56 388.85 3.28 -73.28 By element: Atomic # 1 Polarization: 32.94 SS G_CDS: -0.25 Total: 32.69 kcal Atomic # 6 Polarization: -26.57 SS G_CDS: 4.34 Total: -22.23 kcal Atomic # 7 Polarization: -114.35 SS G_CDS: -3.56 Total: -117.91 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.04 Total: -18.51 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.73 Total: -2.25 kcal Atomic # 14 Polarization: 52.87 SS G_CDS: 2.05 Total: 54.93 kcal Total: -76.56 3.28 -73.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034757722.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.480 kcal (2) G-P(sol) polarization free energy of solvation -76.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds