Wall clock time and date at job start Tue Mar 31 2020 18:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 N 1.28720 * 125.32329 * 2 1 4 4 N 1.28984 * 108.98742 * 179.97438 * 3 2 1 5 5 C 1.34183 * 107.25484 * 359.97438 * 4 3 2 6 6 C 1.48003 * 126.70053 * 179.97438 * 5 4 3 7 7 O 1.21530 * 120.00413 * 187.30703 * 6 5 4 8 8 N 1.34779 * 119.99739 * 7.31620 * 6 5 4 9 9 C 1.46962 * 120.65507 * 6.80152 * 8 6 5 10 10 C 1.53195 * 108.88585 * 233.53993 * 9 8 6 11 11 C 1.53041 * 109.31449 * 305.44106 * 10 9 8 12 12 C 1.53041 * 109.53691 * 61.36335 * 11 10 9 13 13 C 1.46933 * 120.62754 * 186.98675 * 8 6 5 14 14 H 1.08997 * 109.58402 * 246.31246 * 13 8 6 15 15 C 1.52995 * 109.58578 * 6.59879 * 13 8 6 16 16 H 1.08995 * 110.64486 * 303.17054 * 15 13 8 17 17 C 1.55159 * 110.72076 * 66.32003 * 15 13 8 18 18 C 1.54907 * 101.58010 * 154.03825 * 17 15 13 19 19 N 1.47423 * 104.83687 * 322.99021 * 18 17 15 20 20 C 1.36938 * 125.64953 * 204.09436 * 19 18 17 21 21 H 1.07999 * 119.99649 * 180.02562 * 20 19 18 22 22 C 1.38806 * 120.00005 * 0.02562 * 20 19 18 23 23 N 1.31622 * 120.00034 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99960 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.46978 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47131 * 120.00033 * 24 22 20 27 27 H 1.48501 * 109.47297 * 239.99621 * 24 22 20 28 28 C 1.47028 * 108.69980 * 24.12549 * 19 18 17 29 29 N 1.28876 * 125.32167 * 180.31028 * 2 1 3 30 30 H 1.09010 * 109.46929 * 89.97736 * 1 2 3 31 31 H 1.08997 * 109.47494 * 209.97715 * 1 2 3 32 32 H 1.09001 * 109.47660 * 329.97943 * 1 2 3 33 33 H 1.08995 * 109.46749 * 113.75878 * 9 8 6 34 34 H 1.09004 * 109.71313 * 353.46450 * 9 8 6 35 35 H 1.09005 * 109.49730 * 185.48779 * 10 9 8 36 36 H 1.08996 * 109.52570 * 65.41069 * 10 9 8 37 37 H 1.09003 * 109.45770 * 301.35017 * 11 10 9 38 38 H 1.09001 * 109.45311 * 181.38007 * 11 10 9 39 39 H 1.09000 * 109.49972 * 178.68419 * 12 11 10 40 40 H 1.09004 * 109.52388 * 58.60322 * 12 11 10 41 41 H 1.09006 * 111.00281 * 35.96376 * 17 15 13 42 42 H 1.09000 * 111.00154 * 272.11295 * 17 15 13 43 43 H 1.09001 * 110.36633 * 81.83445 * 18 17 15 44 44 H 1.09005 * 110.36391 * 204.14790 * 18 17 15 45 45 H 0.96999 * 119.99773 * 180.02562 * 23 22 20 46 46 H 1.09002 * 109.88310 * 239.52602 * 28 19 18 47 47 H 1.09002 * 109.87426 * 118.36083 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2092 1.0502 0.0000 4 7 3.4469 0.6874 0.0005 5 6 3.4684 -0.6542 0.0015 6 6 4.6691 -1.5196 0.0018 7 8 4.5518 -2.7219 -0.1312 8 7 5.8927 -0.9742 0.1498 9 6 6.0439 0.4543 0.4599 10 6 6.9804 1.0894 -0.5728 11 6 8.2976 0.3111 -0.6079 12 6 8.0262 -1.1356 -1.0272 13 6 7.1016 -1.7960 0.0003 14 1 7.6144 -1.8695 0.9593 15 6 6.7142 -3.1950 -0.4828 16 1 6.0036 -3.6555 0.2036 17 6 6.1314 -3.1379 -1.9197 18 6 6.4488 -4.5617 -2.4408 19 7 7.7664 -4.8890 -1.8662 20 6 8.6580 -5.7935 -2.3782 21 1 9.6013 -5.9629 -1.8803 22 6 8.3494 -6.4926 -3.5369 23 7 7.1995 -6.2865 -4.1433 24 14 9.5659 -7.7260 -4.2357 25 1 10.7739 -7.7727 -3.3734 26 1 8.9374 -9.0707 -4.2797 27 1 9.9532 -7.3155 -5.6093 28 6 7.9643 -4.0840 -0.6519 29 7 2.2100 -1.0515 -0.0057 30 1 -0.3633 0.0004 -1.0278 31 1 -0.3634 -0.8901 0.5135 32 1 -0.3634 0.8898 0.5141 33 1 6.4696 0.5666 1.4570 34 1 5.0709 0.9441 0.4206 35 1 7.1773 2.1254 -0.2968 36 1 6.5128 1.0577 -1.5568 37 1 8.7528 0.3227 0.3825 38 1 8.9750 0.7758 -1.3243 39 1 8.9674 -1.6833 -1.0746 40 1 7.5486 -1.1474 -2.0069 41 1 6.6392 -2.3808 -2.5174 42 1 5.0562 -2.9603 -1.8984 43 1 5.6966 -5.2696 -2.0926 44 1 6.4985 -4.5648 -3.5297 45 1 6.9836 -6.7754 -4.9528 46 1 8.8511 -3.4597 -0.7614 47 1 8.0736 -4.7384 0.2129 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039247737.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:47 Heat of formation + Delta-G solvation = 149.113471 kcal Electronic energy + Delta-G solvation = -30539.583133 eV Core-core repulsion = 26569.606857 eV Total energy + Delta-G solvation = -3969.976276 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -45.55381 -41.98599 -38.97898 -38.27316 -36.39835 -34.92359 -34.26512 -33.86032 -32.58265 -30.67299 -29.78432 -28.97573 -27.29924 -26.21182 -25.28589 -24.60288 -23.77357 -22.34833 -22.14592 -21.14011 -20.24267 -18.99211 -18.71145 -18.52578 -17.72183 -17.12173 -16.91114 -16.75366 -16.19326 -15.86712 -15.62487 -15.34737 -15.01635 -14.57105 -14.53827 -14.37697 -14.24466 -14.14051 -13.97180 -13.51837 -13.42773 -13.24705 -12.99611 -12.88081 -12.73177 -12.49667 -12.25736 -12.24893 -12.08838 -11.96396 -11.85074 -11.70324 -11.55437 -11.45441 -11.37397 -11.10286 -10.98315 -10.71760 -10.27546 -9.56314 -8.84466 -7.74016 -5.19485 -0.13414 0.24748 0.82644 1.45180 1.47683 1.58072 1.64358 1.92461 2.50834 2.70523 3.02490 3.34121 3.57444 3.75642 3.84709 3.95287 4.02139 4.07882 4.12235 4.21885 4.23605 4.29516 4.35604 4.42720 4.46047 4.58674 4.61322 4.69500 4.76257 4.87336 4.96835 4.98167 5.02698 5.09616 5.16131 5.21503 5.24714 5.32113 5.35976 5.46527 5.52742 5.56323 5.64000 5.79653 5.82940 6.21732 6.31468 6.85311 7.08863 7.12052 7.80814 8.48061 9.28200 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.015935 B = 0.003416 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.662961 B = 8193.866471 C = 9455.800214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.116 5.116 3 N -0.060 5.060 4 N -0.261 5.261 5 C 0.124 3.876 6 C 0.597 3.403 7 O -0.518 6.518 8 N -0.577 5.577 9 C 0.069 3.931 10 C -0.124 4.124 11 C -0.113 4.113 12 C -0.134 4.134 13 C 0.170 3.830 14 H 0.099 0.901 15 C -0.088 4.088 16 H 0.093 0.907 17 C -0.117 4.117 18 C 0.164 3.836 19 N -0.623 5.623 20 C -0.235 4.235 21 H 0.084 0.916 22 C -0.075 4.075 23 N -0.953 5.953 24 Si 0.984 3.016 25 H -0.263 1.263 26 H -0.295 1.295 27 H -0.290 1.290 28 C 0.133 3.867 29 N -0.269 5.269 30 H 0.126 0.874 31 H 0.128 0.872 32 H 0.147 0.853 33 H 0.089 0.911 34 H 0.132 0.868 35 H 0.102 0.898 36 H 0.050 0.950 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.053 0.947 41 H 0.058 0.942 42 H 0.065 0.935 43 H -0.031 1.031 44 H 0.066 0.934 45 H 0.244 0.756 46 H 0.043 0.957 47 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.612 22.326 12.215 27.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.031 5.031 3 N -0.053 5.053 4 N -0.134 5.134 5 C -0.160 4.160 6 C 0.379 3.621 7 O -0.391 6.391 8 N -0.309 5.309 9 C -0.053 4.053 10 C -0.162 4.162 11 C -0.151 4.151 12 C -0.172 4.172 13 C 0.067 3.933 14 H 0.117 0.883 15 C -0.107 4.107 16 H 0.111 0.889 17 C -0.156 4.156 18 C 0.039 3.961 19 N -0.349 5.349 20 C -0.364 4.364 21 H 0.102 0.898 22 C -0.266 4.266 23 N -0.604 5.604 24 Si 0.812 3.188 25 H -0.187 1.187 26 H -0.222 1.222 27 H -0.217 1.217 28 C 0.007 3.993 29 N -0.124 5.124 30 H 0.144 0.856 31 H 0.147 0.853 32 H 0.165 0.835 33 H 0.107 0.893 34 H 0.149 0.851 35 H 0.121 0.879 36 H 0.069 0.931 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.083 0.917 43 H -0.013 1.013 44 H 0.084 0.916 45 H 0.054 0.946 46 H 0.060 0.940 47 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -11.037 22.086 12.009 27.456 hybrid contribution 0.408 -1.714 -0.799 1.934 sum -10.629 20.372 11.210 25.567 Atomic orbital electron populations 1.23244 0.65121 1.09488 1.08535 1.50748 1.12638 0.99457 1.40240 1.78833 0.96533 1.14579 1.15325 1.75696 1.10099 1.09425 1.18200 1.25317 0.93232 0.90475 1.06930 1.16563 0.81486 0.85404 0.78615 1.90888 1.85045 1.14395 1.48804 1.47882 1.03418 1.11823 1.67818 1.22919 1.05012 0.77801 0.99530 1.21834 0.95055 1.00506 0.98809 1.21546 0.97599 0.93122 1.02820 1.22089 0.99200 0.97590 0.98278 1.21232 0.83925 0.88320 0.99791 0.88324 1.22599 0.95821 0.94558 0.97732 0.88879 1.23155 0.99676 0.97026 0.95695 1.21550 0.84655 0.90994 0.98878 1.44812 1.16944 1.46331 1.26837 1.19567 0.97530 1.13733 1.05532 0.89771 1.25727 0.99329 1.02713 0.98863 1.70144 1.23920 1.45543 1.20762 0.84914 0.78175 0.77788 0.77880 1.18718 1.22186 1.21683 1.21632 0.96729 0.92679 0.88228 1.75109 1.02651 1.15663 1.18999 0.85604 0.85322 0.83478 0.89270 0.85149 0.87917 0.93108 0.89991 0.90755 0.90546 0.92824 0.92326 0.91654 1.01350 0.91564 0.94588 0.93969 0.96726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.32 11.62 127.77 1.49 1.80 16 2 N -0.12 -2.10 4.39 -206.59 -0.91 -3.00 16 3 N -0.06 -1.24 13.23 37.02 0.49 -0.75 16 4 N -0.26 -6.34 8.99 -52.37 -0.47 -6.81 16 5 C 0.12 3.56 7.85 137.15 1.08 4.64 16 6 C 0.60 19.51 6.80 86.83 0.59 20.10 16 7 O -0.52 -20.92 10.69 -3.81 -0.04 -20.96 16 8 N -0.58 -15.78 2.96 -798.13 -2.36 -18.14 16 9 C 0.07 1.37 6.31 86.36 0.55 1.91 16 10 C -0.12 -2.18 6.08 30.67 0.19 -1.99 16 11 C -0.11 -2.12 5.88 30.62 0.18 -1.94 16 12 C -0.13 -3.64 4.79 30.67 0.15 -3.49 16 13 C 0.17 4.98 2.75 44.97 0.12 5.10 16 14 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 15 C -0.09 -3.52 2.06 -9.61 -0.02 -3.54 16 16 H 0.09 4.10 5.81 -11.65 -0.07 4.03 16 17 C -0.12 -5.35 5.36 31.99 0.17 -5.18 16 18 C 0.16 9.40 5.89 86.85 0.51 9.91 16 19 N -0.62 -35.31 3.39 -691.97 -2.35 -37.66 16 20 C -0.23 -14.03 10.27 84.03 0.86 -13.16 16 21 H 0.08 4.76 7.83 -2.91 -0.02 4.73 16 22 C -0.07 -4.50 5.49 84.86 0.47 -4.04 16 23 N -0.95 -61.19 10.09 21.65 0.22 -60.98 16 24 Si 0.98 48.08 29.55 68.60 2.03 50.11 16 25 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 26 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 27 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 28 C 0.13 5.99 6.66 86.73 0.58 6.56 16 29 N -0.27 -7.20 12.17 -52.32 -0.64 -7.83 16 30 H 0.13 0.14 8.14 -2.38 -0.02 0.12 16 31 H 0.13 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.15 -0.26 8.14 -2.39 -0.02 -0.28 16 33 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.13 2.71 3.78 -65.74 -0.25 2.46 16 35 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.08 2.20 6.40 -2.39 -0.02 2.18 16 40 H 0.05 1.73 5.71 -2.39 -0.01 1.72 16 41 H 0.06 2.58 5.49 -2.38 -0.01 2.57 16 42 H 0.07 3.05 5.55 -2.39 -0.01 3.04 16 43 H -0.03 -2.00 8.14 -2.39 -0.02 -2.02 16 44 H 0.07 4.21 5.88 -2.38 -0.01 4.20 16 45 H 0.24 15.14 8.31 -92.71 -0.77 14.36 16 46 H 0.04 1.75 5.93 -2.39 -0.01 1.74 16 47 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -82.77 354.87 3.59 -79.19 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 0.71 Total: 10.14 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: 6.90 Total: 16.69 kcal Atomic # 7 Polarization: -129.16 SS G_CDS: -6.02 Total: -135.17 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.04 Total: -20.96 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 2.03 Total: 50.11 kcal Total: -82.77 3.59 -79.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039247737.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.299 kcal (2) G-P(sol) polarization free energy of solvation -82.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds