Wall clock time and date at job start Tue Mar 31 2020 18:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34771 * 120.00019 * 2 1 4 4 O 1.21286 * 119.99596 * 185.18954 * 3 2 1 5 5 C 1.50702 * 120.00369 * 5.19069 * 3 2 1 6 6 N 1.46501 * 109.47243 * 297.19292 * 5 3 2 7 7 C 1.34597 * 126.43546 * 289.78942 * 6 5 3 8 8 N 1.31068 * 106.67687 * 179.87167 * 7 6 5 9 9 N 1.28840 * 107.99222 * 0.38790 * 8 7 6 10 10 N 1.28735 * 109.39523 * 359.74879 * 9 8 7 11 11 C 1.52997 * 109.47386 * 177.18835 * 5 3 2 12 12 C 1.52999 * 109.47144 * 179.97438 * 11 5 3 13 13 C 1.53003 * 109.46807 * 60.00397 * 12 11 5 14 14 C 1.52997 * 109.46944 * 299.99726 * 13 12 11 15 15 C 1.52999 * 109.47144 * 60.00481 * 14 13 12 16 16 C 1.46500 * 119.99695 * 180.02562 * 2 1 3 17 17 C 1.53945 * 113.74233 * 31.73029 * 16 2 1 18 18 N 1.47581 * 86.11604 * 222.04636 * 17 16 2 19 19 C 1.36938 * 134.49293 * 204.64048 * 18 17 16 20 20 H 1.08000 * 120.00103 * 180.02562 * 19 18 17 21 21 C 1.38812 * 120.00201 * 359.97438 * 19 18 17 22 22 N 1.31621 * 119.99795 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00184 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46939 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47108 * 119.99918 * 23 21 19 26 26 H 1.48506 * 109.46649 * 240.00065 * 23 21 19 27 27 C 1.47581 * 91.01667 * 24.63964 * 18 17 16 28 28 H 1.09004 * 109.46903 * 245.37655 * 1 2 3 29 29 H 1.09003 * 109.47071 * 5.36891 * 1 2 3 30 30 H 1.08994 * 109.47304 * 125.36951 * 1 2 3 31 31 H 1.08003 * 126.65884 * 0.02562 * 7 6 5 32 32 H 1.08997 * 109.47471 * 300.00134 * 11 5 3 33 33 H 1.09004 * 109.46865 * 60.00171 * 11 5 3 34 34 H 1.08997 * 109.47159 * 300.00464 * 12 11 5 35 35 H 1.09007 * 109.46942 * 180.02562 * 12 11 5 36 36 H 1.09001 * 109.46765 * 179.97438 * 13 12 11 37 37 H 1.08997 * 109.47206 * 60.00096 * 13 12 11 38 38 H 1.09001 * 109.47570 * 299.99721 * 14 13 12 39 39 H 1.09004 * 109.46865 * 180.02562 * 14 13 12 40 40 H 1.08998 * 109.46815 * 179.97438 * 15 14 13 41 41 H 1.08997 * 109.47159 * 59.99536 * 15 14 13 42 42 H 1.09006 * 113.01499 * 163.39031 * 16 2 1 43 43 H 1.08997 * 113.76813 * 336.34214 * 17 16 2 44 44 H 1.08991 * 113.77441 * 107.74527 * 17 16 2 45 45 H 0.96995 * 120.00537 * 180.02562 * 22 21 19 46 46 H 1.09006 * 113.77185 * 221.06077 * 27 18 17 47 47 H 1.08998 * 113.77128 * 89.65956 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3480 1.1692 -0.0950 5 6 1.3901 2.4696 0.1181 6 7 0.5056 2.6311 -1.0386 7 6 0.8848 2.8725 -2.3073 8 7 -0.2124 2.9429 -3.0209 9 7 -1.2136 2.7628 -2.2302 10 7 -0.7832 2.5740 -1.0317 11 6 2.3874 3.6290 0.1633 12 6 1.6271 4.9514 0.2825 13 6 0.7928 4.9460 1.5651 14 6 -0.2045 3.7867 1.5198 15 6 0.5557 2.4643 1.4006 16 6 2.1974 -1.2688 -0.0006 17 6 1.4693 -2.4045 -0.7422 18 7 1.8921 -3.2701 0.3758 19 6 2.1069 -4.6148 0.5203 20 1 2.4227 -5.0119 1.4737 21 6 1.9177 -5.4677 -0.5584 22 7 1.5323 -4.9839 -1.7202 23 14 2.2100 -7.3021 -0.3612 24 1 2.6349 -7.5885 1.0326 25 1 0.9547 -8.0380 -0.6577 26 1 3.2733 -7.7378 -1.3018 27 6 1.9905 -2.1045 1.2757 28 1 -0.3633 -0.4282 0.9343 29 1 -0.3633 1.0232 -0.0962 30 1 -0.3633 -0.5948 -0.8379 31 1 1.8968 2.9838 -2.6678 32 1 3.0454 3.5089 1.0239 33 1 2.9815 3.6330 -0.7506 34 1 0.9694 5.0712 -0.5783 35 1 2.3377 5.7774 0.3143 36 1 0.2515 5.8883 1.6502 37 1 1.4505 4.8262 2.4259 38 1 -0.8624 3.9065 0.6590 39 1 -0.7992 3.7831 2.4333 40 1 -0.1548 1.6383 1.3688 41 1 1.2135 2.3445 2.2614 42 1 3.2432 -1.1571 -0.2873 43 1 0.3901 -2.2659 -0.8066 44 1 1.9235 -2.6674 -1.6974 45 1 1.3997 -5.5798 -2.4739 46 1 2.8610 -2.1279 1.9314 47 1 1.0644 -1.8778 1.8039 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043519096.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:24 Heat of formation + Delta-G solvation = 173.674655 kcal Electronic energy + Delta-G solvation = -30989.761892 eV Core-core repulsion = 27020.850669 eV Total energy + Delta-G solvation = -3968.911223 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.58891 -40.94752 -38.78541 -37.56540 -35.27022 -34.43286 -32.84036 -32.15386 -31.20190 -30.76005 -27.83121 -27.09946 -25.19028 -24.95498 -24.19079 -24.03654 -22.75438 -22.52603 -20.65231 -20.31538 -18.84493 -18.03079 -17.37087 -16.99605 -16.56392 -16.25407 -16.00270 -15.51038 -14.95614 -14.86195 -14.56951 -14.32345 -13.92069 -13.74675 -13.54902 -13.37909 -13.06696 -12.89509 -12.70732 -12.59509 -12.27761 -12.15211 -11.99512 -11.70530 -11.56453 -11.47497 -11.41823 -11.22039 -11.08652 -10.97287 -10.86895 -10.81023 -10.63386 -10.37151 -10.32178 -10.13629 -9.69167 -9.66035 -8.90403 -8.44465 -7.02262 -5.87508 -3.21348 1.03314 1.40058 2.11399 2.52924 2.77131 3.34122 3.39229 3.42047 3.71958 3.86579 4.04965 4.09743 4.38503 4.41643 4.51093 4.58765 4.67178 4.82438 4.93721 4.97533 5.05110 5.06819 5.24683 5.26366 5.31923 5.37636 5.39576 5.44812 5.55460 5.56704 5.58217 5.63373 5.72098 5.77149 5.80231 5.87248 5.93559 5.98809 6.08121 6.28863 6.41508 6.50356 7.04204 7.12385 7.34702 7.44134 7.85472 7.90650 8.44742 8.93108 9.59427 10.44001 11.29616 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.020419 B = 0.003260 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.930847 B = 8585.821619 C = 9118.693430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.579 5.579 3 C 0.505 3.495 4 O -0.521 6.521 5 C 0.161 3.839 6 N -0.297 5.297 7 C 0.172 3.828 8 N -0.303 5.303 9 N -0.073 5.073 10 N -0.088 5.088 11 C -0.110 4.110 12 C -0.123 4.123 13 C -0.123 4.123 14 C -0.125 4.125 15 C -0.130 4.130 16 C 0.085 3.915 17 C 0.157 3.843 18 N -0.603 5.603 19 C -0.226 4.226 20 H 0.084 0.916 21 C -0.005 4.005 22 N -0.919 5.919 23 Si 0.915 3.085 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.289 1.289 27 C 0.111 3.889 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.230 0.770 32 H 0.104 0.896 33 H 0.085 0.915 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.117 0.883 43 H 0.034 0.966 44 H 0.078 0.922 45 H 0.255 0.745 46 H 0.049 0.951 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.000 22.009 5.850 22.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.310 5.310 3 C 0.288 3.712 4 O -0.396 6.396 5 C 0.074 3.926 6 N -0.100 5.100 7 C -0.127 4.127 8 N -0.151 5.151 9 N -0.067 5.067 10 N -0.073 5.073 11 C -0.149 4.149 12 C -0.160 4.160 13 C -0.161 4.161 14 C -0.162 4.162 15 C -0.168 4.168 16 C -0.018 4.018 17 C 0.031 3.969 18 N -0.329 5.329 19 C -0.354 4.354 20 H 0.101 0.899 21 C -0.202 4.202 22 N -0.566 5.566 23 Si 0.745 3.255 24 H -0.204 1.204 25 H -0.216 1.216 26 H -0.215 1.215 27 C -0.016 4.016 28 H 0.088 0.912 29 H 0.116 0.884 30 H 0.092 0.908 31 H 0.246 0.754 32 H 0.123 0.877 33 H 0.103 0.897 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.118 0.882 41 H 0.114 0.886 42 H 0.135 0.865 43 H 0.051 0.949 44 H 0.097 0.903 45 H 0.065 0.935 46 H 0.067 0.933 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -1.740 21.575 5.486 22.330 hybrid contribution 0.986 -1.214 0.268 1.587 sum -0.754 20.361 5.755 21.172 Atomic orbital electron populations 1.22686 0.79363 1.04732 1.03527 1.48134 1.07302 1.06061 1.69514 1.20135 0.87920 0.84558 0.78616 1.90751 1.13079 1.86476 1.49285 1.21705 0.89797 0.96469 0.84648 1.48751 1.05720 1.45743 1.09780 1.27648 1.02978 1.00802 0.81277 1.75061 0.95354 1.18526 1.26119 1.78664 1.20920 1.13992 0.93094 1.78546 0.91692 1.18039 1.19016 1.21828 0.96010 0.91222 1.05813 1.21608 0.99143 0.96681 0.98614 1.21609 0.98014 0.98793 0.97677 1.21676 0.98057 0.92723 1.03788 1.22183 0.99718 1.01284 0.93616 1.24259 0.98060 0.79450 0.99992 1.22616 0.96016 0.83652 0.94585 1.45637 1.78310 1.01786 1.07211 1.19038 1.39622 0.79886 0.96810 0.89869 1.24823 1.01316 0.98388 0.95674 1.69813 1.51826 1.33922 1.01006 0.86000 0.77475 0.84529 0.77457 1.20352 1.21614 1.21544 1.22937 0.98370 0.86919 0.93393 0.91211 0.88382 0.90809 0.75351 0.87733 0.89652 0.92328 0.90399 0.91419 0.91301 0.90305 0.90508 0.88188 0.88584 0.86470 0.94878 0.90339 0.93468 0.93292 0.94685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 7.82 59.85 0.47 1.02 16 2 N -0.58 -8.79 3.08 -175.74 -0.54 -9.33 16 3 C 0.50 6.91 6.55 -10.99 -0.07 6.83 16 4 O -0.52 -8.42 15.50 5.55 0.09 -8.33 16 5 C 0.16 1.59 0.41 -132.97 -0.05 1.54 16 6 N -0.30 -3.20 1.56 -50.89 -0.08 -3.28 16 7 C 0.17 1.85 11.58 -90.39 -1.05 0.81 16 8 N -0.30 -4.08 12.36 29.59 0.37 -3.71 16 9 N -0.07 -1.04 13.43 60.35 0.81 -0.23 16 10 N -0.09 -1.08 8.04 60.35 0.49 -0.59 16 11 C -0.11 -0.86 3.79 -26.73 -0.10 -0.97 16 12 C -0.12 -0.81 5.77 -26.73 -0.15 -0.96 16 13 C -0.12 -0.77 5.92 -26.73 -0.16 -0.93 16 14 C -0.12 -0.92 5.70 -26.73 -0.15 -1.08 16 15 C -0.13 -1.12 4.17 -26.73 -0.11 -1.23 16 16 C 0.09 1.61 4.37 -70.15 -0.31 1.31 16 17 C 0.16 3.62 6.90 -2.97 -0.02 3.60 16 18 N -0.60 -15.15 3.70 -178.09 -0.66 -15.81 16 19 C -0.23 -6.25 10.70 -15.06 -0.16 -6.41 16 20 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 21 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 22 N -0.92 -26.93 11.38 55.49 0.63 -26.30 16 23 Si 0.92 21.88 29.55 -169.99 -5.02 16.85 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 C 0.11 2.22 8.59 -2.97 -0.03 2.19 16 28 H 0.07 0.91 7.40 -51.93 -0.38 0.52 16 29 H 0.10 1.20 1.66 -51.93 -0.09 1.12 16 30 H 0.07 1.16 6.56 -51.93 -0.34 0.81 16 31 H 0.23 1.68 7.79 -52.48 -0.41 1.27 16 32 H 0.10 0.80 8.13 -51.93 -0.42 0.38 16 33 H 0.08 0.65 7.52 -51.93 -0.39 0.26 16 34 H 0.06 0.46 7.32 -51.93 -0.38 0.08 16 35 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.72 5.94 -51.93 -0.31 0.41 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.10 0.94 4.83 -51.93 -0.25 0.69 16 41 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.12 2.37 7.29 -51.93 -0.38 2.00 16 43 H 0.03 0.77 6.05 -51.93 -0.31 0.45 16 44 H 0.08 2.04 7.15 -51.93 -0.37 1.67 16 45 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 46 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 47 H 0.04 0.66 7.39 -51.93 -0.38 0.28 16 LS Contribution 357.74 15.07 5.39 5.39 Total: -1.00 -32.46 357.74 -7.03 -39.49 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -6.50 Total: 0.36 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -1.99 Total: 5.49 kcal Atomic # 7 Polarization: -60.27 SS G_CDS: 1.01 Total: -59.25 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: 0.09 Total: -8.33 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.46 -7.03 -39.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043519096.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.166 kcal (2) G-P(sol) polarization free energy of solvation -32.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 180.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 173.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds