Wall clock time and date at job start Tue Mar 31 2020 18:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34771 * 120.00019 * 2 1 4 4 O 1.21286 * 119.99596 * 185.18954 * 3 2 1 5 5 C 1.50702 * 120.00369 * 5.19069 * 3 2 1 6 6 N 1.46501 * 109.47243 * 297.19292 * 5 3 2 7 7 C 1.34597 * 126.43546 * 289.78942 * 6 5 3 8 8 N 1.31068 * 106.67687 * 179.87167 * 7 6 5 9 9 N 1.28840 * 107.99222 * 0.38790 * 8 7 6 10 10 N 1.28735 * 109.39523 * 359.74879 * 9 8 7 11 11 C 1.52997 * 109.47386 * 177.18835 * 5 3 2 12 12 C 1.52999 * 109.47144 * 179.97438 * 11 5 3 13 13 C 1.53003 * 109.46807 * 60.00397 * 12 11 5 14 14 C 1.52997 * 109.46944 * 299.99726 * 13 12 11 15 15 C 1.52999 * 109.47144 * 60.00481 * 14 13 12 16 16 C 1.46500 * 119.99695 * 180.02562 * 2 1 3 17 17 C 1.53945 * 113.74233 * 31.73029 * 16 2 1 18 18 N 1.47581 * 86.11604 * 222.04636 * 17 16 2 19 19 C 1.36938 * 134.49293 * 204.64048 * 18 17 16 20 20 H 1.08000 * 120.00103 * 180.02562 * 19 18 17 21 21 C 1.38812 * 120.00201 * 359.97438 * 19 18 17 22 22 N 1.31621 * 119.99795 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00184 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46939 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47108 * 119.99918 * 23 21 19 26 26 H 1.48506 * 109.46649 * 240.00065 * 23 21 19 27 27 C 1.47581 * 91.01667 * 24.63964 * 18 17 16 28 28 H 1.09004 * 109.46903 * 245.37655 * 1 2 3 29 29 H 1.09003 * 109.47071 * 5.36891 * 1 2 3 30 30 H 1.08994 * 109.47304 * 125.36951 * 1 2 3 31 31 H 1.08003 * 126.65884 * 0.02562 * 7 6 5 32 32 H 1.08997 * 109.47471 * 300.00134 * 11 5 3 33 33 H 1.09004 * 109.46865 * 60.00171 * 11 5 3 34 34 H 1.08997 * 109.47159 * 300.00464 * 12 11 5 35 35 H 1.09007 * 109.46942 * 180.02562 * 12 11 5 36 36 H 1.09001 * 109.46765 * 179.97438 * 13 12 11 37 37 H 1.08997 * 109.47206 * 60.00096 * 13 12 11 38 38 H 1.09001 * 109.47570 * 299.99721 * 14 13 12 39 39 H 1.09004 * 109.46865 * 180.02562 * 14 13 12 40 40 H 1.08998 * 109.46815 * 179.97438 * 15 14 13 41 41 H 1.08997 * 109.47159 * 59.99536 * 15 14 13 42 42 H 1.09006 * 113.01499 * 163.39031 * 16 2 1 43 43 H 1.08997 * 113.76813 * 336.34214 * 17 16 2 44 44 H 1.08991 * 113.77441 * 107.74527 * 17 16 2 45 45 H 0.96995 * 120.00537 * 180.02562 * 22 21 19 46 46 H 1.09006 * 113.77185 * 221.06077 * 27 18 17 47 47 H 1.08998 * 113.77128 * 89.65956 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3480 1.1692 -0.0950 5 6 1.3901 2.4696 0.1181 6 7 0.5056 2.6311 -1.0386 7 6 0.8848 2.8725 -2.3073 8 7 -0.2124 2.9429 -3.0209 9 7 -1.2136 2.7628 -2.2302 10 7 -0.7832 2.5740 -1.0317 11 6 2.3874 3.6290 0.1633 12 6 1.6271 4.9514 0.2825 13 6 0.7928 4.9460 1.5651 14 6 -0.2045 3.7867 1.5198 15 6 0.5557 2.4643 1.4006 16 6 2.1974 -1.2688 -0.0006 17 6 1.4693 -2.4045 -0.7422 18 7 1.8921 -3.2701 0.3758 19 6 2.1069 -4.6148 0.5203 20 1 2.4227 -5.0119 1.4737 21 6 1.9177 -5.4677 -0.5584 22 7 1.5323 -4.9839 -1.7202 23 14 2.2100 -7.3021 -0.3612 24 1 2.6349 -7.5885 1.0326 25 1 0.9547 -8.0380 -0.6577 26 1 3.2733 -7.7378 -1.3018 27 6 1.9905 -2.1045 1.2757 28 1 -0.3633 -0.4282 0.9343 29 1 -0.3633 1.0232 -0.0962 30 1 -0.3633 -0.5948 -0.8379 31 1 1.8968 2.9838 -2.6678 32 1 3.0454 3.5089 1.0239 33 1 2.9815 3.6330 -0.7506 34 1 0.9694 5.0712 -0.5783 35 1 2.3377 5.7774 0.3143 36 1 0.2515 5.8883 1.6502 37 1 1.4505 4.8262 2.4259 38 1 -0.8624 3.9065 0.6590 39 1 -0.7992 3.7831 2.4333 40 1 -0.1548 1.6383 1.3688 41 1 1.2135 2.3445 2.2614 42 1 3.2432 -1.1571 -0.2873 43 1 0.3901 -2.2659 -0.8066 44 1 1.9235 -2.6674 -1.6974 45 1 1.3997 -5.5798 -2.4739 46 1 2.8610 -2.1279 1.9314 47 1 1.0644 -1.8778 1.8039 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043519096.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:23 Heat of formation + Delta-G solvation = 153.778761 kcal Electronic energy + Delta-G solvation = -30990.624642 eV Core-core repulsion = 27020.850669 eV Total energy + Delta-G solvation = -3969.773973 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -45.53301 -42.03813 -40.08610 -38.78495 -36.44972 -35.48695 -34.09266 -33.75663 -31.96184 -31.56873 -29.62887 -28.37087 -26.70850 -26.16923 -25.38715 -25.06673 -23.80201 -23.45496 -21.62610 -21.31727 -20.32295 -19.10081 -18.77144 -18.38102 -17.73360 -17.35804 -17.05507 -16.81079 -16.49863 -15.89782 -15.65466 -15.45169 -15.19488 -14.83680 -14.60877 -14.26490 -14.12917 -13.93860 -13.75961 -13.65119 -13.44224 -13.36049 -13.26195 -13.12008 -12.98333 -12.86697 -12.64746 -12.41883 -12.27380 -12.13302 -12.05558 -11.97929 -11.72794 -11.63243 -11.51590 -11.34926 -11.20073 -10.94593 -10.76202 -9.82222 -9.03326 -7.98057 -5.33166 0.10236 0.45965 1.13207 1.43277 1.44845 1.46509 1.55244 1.59193 2.43266 2.83391 2.95500 3.20618 3.28145 3.32911 3.36918 3.57348 3.66091 3.92854 3.95456 4.00605 4.03986 4.14966 4.22423 4.26786 4.32008 4.34554 4.37382 4.48524 4.56283 4.65498 4.68924 4.72105 4.79026 4.84817 4.94729 4.99260 5.06123 5.06759 5.11826 5.12859 5.25546 5.26532 5.39152 5.47187 5.48821 5.82114 6.10400 6.70425 6.82892 7.47583 7.52186 8.43498 9.19036 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.020419 B = 0.003260 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.930847 B = 8585.821619 C = 9118.693430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.583 5.583 3 C 0.508 3.492 4 O -0.541 6.541 5 C 0.169 3.831 6 N -0.294 5.294 7 C 0.177 3.823 8 N -0.327 5.327 9 N -0.100 5.100 10 N -0.084 5.084 11 C -0.108 4.108 12 C -0.117 4.117 13 C -0.122 4.122 14 C -0.120 4.120 15 C -0.132 4.132 16 C 0.115 3.885 17 C 0.158 3.842 18 N -0.633 5.633 19 C -0.236 4.236 20 H 0.090 0.910 21 C -0.065 4.065 22 N -0.954 5.954 23 Si 0.982 3.018 24 H -0.262 1.262 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.118 3.882 28 H 0.081 0.919 29 H 0.116 0.884 30 H 0.050 0.950 31 H 0.261 0.739 32 H 0.113 0.887 33 H 0.088 0.912 34 H 0.044 0.956 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.060 0.940 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.112 0.888 42 H 0.105 0.895 43 H 0.030 0.970 44 H 0.040 0.960 45 H 0.249 0.751 46 H 0.060 0.940 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.374 23.661 7.884 24.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.314 5.314 3 C 0.293 3.707 4 O -0.417 6.417 5 C 0.083 3.917 6 N -0.098 5.098 7 C -0.121 4.121 8 N -0.175 5.175 9 N -0.093 5.093 10 N -0.070 5.070 11 C -0.147 4.147 12 C -0.154 4.154 13 C -0.159 4.159 14 C -0.158 4.158 15 C -0.169 4.169 16 C 0.010 3.990 17 C 0.032 3.968 18 N -0.360 5.360 19 C -0.364 4.364 20 H 0.107 0.893 21 C -0.258 4.258 22 N -0.602 5.602 23 Si 0.810 3.190 24 H -0.186 1.186 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.008 4.008 28 H 0.099 0.901 29 H 0.133 0.867 30 H 0.069 0.931 31 H 0.277 0.723 32 H 0.132 0.868 33 H 0.107 0.893 34 H 0.063 0.937 35 H 0.114 0.886 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.079 0.921 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.131 0.869 42 H 0.123 0.877 43 H 0.048 0.952 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.078 0.922 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.122 23.279 7.553 24.499 hybrid contribution 0.819 -1.648 -0.335 1.870 sum -0.302 21.631 7.218 22.806 Atomic orbital electron populations 1.22720 0.78374 1.05477 1.03118 1.48004 1.07692 1.05414 1.70321 1.20684 0.87785 0.85078 0.77158 1.90747 1.14269 1.86955 1.49741 1.21774 0.90117 0.94853 0.84979 1.48842 1.05404 1.45378 1.10143 1.28229 1.03629 0.99246 0.80981 1.75006 0.96042 1.19563 1.26869 1.78651 1.21731 1.15251 0.93702 1.78485 0.92358 1.17675 1.18465 1.21924 0.95568 0.90739 1.06466 1.21582 0.99173 0.96349 0.98309 1.21627 0.97893 0.98480 0.97936 1.21644 0.98076 0.92468 1.03617 1.22264 0.99707 1.01780 0.93181 1.23476 0.96937 0.80413 0.98144 1.22452 0.95826 0.85485 0.93052 1.45959 1.78608 1.02183 1.09290 1.19444 1.38535 0.81434 0.96962 0.89259 1.25678 1.01901 1.02711 0.95490 1.70007 1.53550 1.35008 1.01640 0.84959 0.76831 0.79258 0.77952 1.18609 1.21908 1.21893 1.23045 0.99572 0.84739 0.93420 0.90086 0.86689 0.93143 0.72335 0.86847 0.89307 0.93703 0.88566 0.90718 0.89865 0.92147 0.89175 0.89109 0.86940 0.87695 0.95234 0.94193 0.94160 0.92159 0.92606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.23 7.82 127.77 1.00 2.23 16 2 N -0.58 -17.19 3.08 -828.31 -2.55 -19.74 16 3 C 0.51 13.05 6.55 87.66 0.57 13.63 16 4 O -0.54 -16.59 15.50 -3.05 -0.05 -16.63 16 5 C 0.17 2.99 0.41 2.86 0.00 2.99 16 6 N -0.29 -5.94 1.56 -314.92 -0.49 -6.43 16 7 C 0.18 3.61 11.58 180.27 2.09 5.70 16 8 N -0.33 -8.69 12.36 -60.29 -0.74 -9.44 16 9 N -0.10 -2.82 13.43 37.01 0.50 -2.32 16 10 N -0.08 -2.00 8.04 37.02 0.30 -1.70 16 11 C -0.11 -1.38 3.79 30.59 0.12 -1.27 16 12 C -0.12 -1.17 5.77 30.59 0.18 -0.99 16 13 C -0.12 -1.10 5.92 30.59 0.18 -0.92 16 14 C -0.12 -1.46 5.70 30.59 0.17 -1.28 16 15 C -0.13 -1.91 4.17 30.59 0.13 -1.78 16 16 C 0.11 4.33 4.37 46.75 0.20 4.53 16 17 C 0.16 7.50 6.90 86.48 0.60 8.10 16 18 N -0.63 -32.10 3.70 -717.37 -2.65 -34.75 16 19 C -0.24 -13.08 10.70 84.03 0.90 -12.18 16 20 H 0.09 4.70 7.83 -2.91 -0.02 4.68 16 21 C -0.06 -3.66 5.50 84.86 0.47 -3.20 16 22 N -0.95 -57.65 11.38 21.65 0.25 -57.40 16 23 Si 0.98 45.46 29.55 68.60 2.03 47.49 16 24 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 25 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 26 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 27 C 0.12 4.59 8.59 86.48 0.74 5.33 16 28 H 0.08 2.00 7.40 -2.38 -0.02 1.98 16 29 H 0.12 2.71 1.66 -2.39 0.00 2.71 16 30 H 0.05 1.61 6.56 -2.39 -0.02 1.59 16 31 H 0.26 3.28 7.79 -2.91 -0.02 3.26 16 32 H 0.11 1.33 8.13 -2.39 -0.02 1.31 16 33 H 0.09 1.10 7.52 -2.39 -0.02 1.08 16 34 H 0.04 0.59 7.32 -2.39 -0.02 0.58 16 35 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 36 H 0.07 0.61 8.14 -2.39 -0.02 0.60 16 37 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.06 0.99 5.94 -2.39 -0.01 0.97 16 39 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.09 1.50 4.83 -2.39 -0.01 1.49 16 41 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.11 4.27 7.29 -2.38 -0.02 4.25 16 43 H 0.03 1.42 6.05 -2.39 -0.01 1.41 16 44 H 0.04 2.19 7.15 -2.39 -0.02 2.17 16 45 H 0.25 14.67 8.31 -92.71 -0.77 13.89 16 46 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 47 H 0.06 1.98 7.39 -2.39 -0.02 1.96 16 Total: -1.00 -71.78 357.74 4.93 -66.84 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 1.00 Total: 13.22 kcal Atomic # 6 Polarization: 13.52 SS G_CDS: 7.35 Total: 20.87 kcal Atomic # 7 Polarization: -126.39 SS G_CDS: -5.40 Total: -131.79 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.05 Total: -16.63 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -71.78 4.93 -66.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043519096.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 220.622 kcal (2) G-P(sol) polarization free energy of solvation -71.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds