Wall clock time and date at job start Tue Mar 31 2020 18:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.28722 * 125.31833 * 2 1 4 4 N 1.28983 * 108.99042 * 180.02562 * 3 2 1 5 5 C 1.34188 * 107.25265 * 359.97438 * 4 3 2 6 6 C 1.48003 * 126.70409 * 179.97438 * 5 4 3 7 7 O 1.21531 * 120.00267 * 186.44475 * 6 5 4 8 8 N 1.35208 * 119.99526 * 6.45259 * 6 5 4 9 9 C 1.43348 * 119.98383 * 356.84243 * 8 6 5 10 10 C 1.55113 * 116.04216 * 269.80373 * 9 8 6 11 11 C 1.54905 * 109.92126 * 320.36403 * 10 9 8 12 12 C 1.49062 * 111.27114 * 318.31032 * 11 10 9 13 13 C 1.51751 * 108.99032 * 97.06829 * 12 11 10 14 14 C 1.55398 * 110.77622 * 50.53715 * 13 12 11 15 15 C 1.54502 * 102.15026 * 69.44343 * 14 13 12 16 16 N 1.47279 * 106.07617 * 29.84655 * 15 14 13 17 17 C 1.36864 * 125.56965 * 175.71741 * 16 15 14 18 18 H 1.08001 * 119.99927 * 180.02562 * 17 16 15 19 19 C 1.38817 * 119.99891 * 0.02566 * 17 16 15 20 20 N 1.31613 * 120.00197 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99580 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47101 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47369 * 119.99962 * 21 19 17 24 24 H 1.48498 * 109.46886 * 239.99995 * 21 19 17 25 25 C 1.47376 * 108.55792 * 355.98198 * 16 15 14 26 26 C 1.45441 * 117.01851 * 280.94262 * 13 12 11 27 27 N 1.28874 * 125.32558 * 180.31306 * 2 1 3 28 28 H 1.09005 * 109.47152 * 90.02966 * 1 2 3 29 29 H 1.08997 * 109.47404 * 210.02185 * 1 2 3 30 30 H 1.08995 * 109.47483 * 330.02992 * 1 2 3 31 31 H 1.08881 * 108.39729 * 31.57424 * 9 8 6 32 32 H 1.09028 * 107.84083 * 148.45869 * 9 8 6 33 33 H 1.08835 * 109.67487 * 80.69810 * 10 9 8 34 34 H 1.08979 * 109.00129 * 200.51008 * 10 9 8 35 35 H 1.08299 * 108.31739 * 81.55088 * 11 10 9 36 36 H 1.09718 * 108.50291 * 198.45502 * 11 10 9 37 37 H 1.09621 * 110.37569 * 335.81336 * 12 11 10 38 38 H 1.09886 * 109.79265 * 217.31891 * 12 11 10 39 39 H 1.07539 * 114.34607 * 308.02741 * 14 13 12 40 40 H 1.09965 * 109.33697 * 185.06624 * 14 13 12 41 41 H 1.08737 * 109.97670 * 270.76087 * 15 14 13 42 42 H 1.08815 * 109.85976 * 148.83150 * 15 14 13 43 43 H 0.96998 * 120.00172 * 179.97438 * 20 19 17 44 44 H 1.08709 * 110.85971 * 94.54367 * 25 16 15 45 45 H 1.08699 * 110.80127 * 218.56657 * 25 16 15 46 46 H 1.09642 * 109.62583 * 169.31731 * 26 13 12 47 47 H 1.09983 * 109.35753 * 287.33406 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2091 1.0503 0.0000 4 7 3.4469 0.6877 -0.0005 5 6 3.4686 -0.6540 -0.0003 6 6 4.6693 -1.5193 -0.0013 7 8 4.5507 -2.7231 -0.1191 8 7 5.8981 -0.9705 0.1290 9 6 6.0427 0.4539 0.2001 10 6 6.2378 1.1869 -1.1529 11 6 7.1678 0.3575 -2.0732 12 6 8.3141 -0.2137 -1.3104 13 6 7.9882 -1.6455 -0.9278 14 6 7.5087 -2.4517 -2.1667 15 6 8.8039 -2.5662 -3.0013 16 7 9.9140 -2.5662 -2.0335 17 6 11.2373 -2.7348 -2.3398 18 1 11.9794 -2.7193 -1.5553 19 6 11.6255 -2.9256 -3.6589 20 7 10.7211 -2.9449 -4.6149 21 14 13.4314 -3.1563 -4.0768 22 1 14.2393 -3.0944 -2.8323 23 1 13.6242 -4.4771 -4.7275 24 1 13.8666 -2.0801 -5.0028 25 6 9.3594 -2.3611 -0.6836 26 6 7.1085 -1.8404 0.2139 27 7 2.2101 -1.0514 -0.0057 28 1 -0.3634 -0.0005 -1.0277 29 1 -0.3634 -0.8897 0.5141 30 1 -0.3634 0.8902 0.5133 31 1 5.1577 0.8654 0.6827 32 1 6.9055 0.6710 0.8302 33 1 5.2736 1.3211 -1.6394 34 1 6.6892 2.1612 -0.9668 35 1 6.5759 -0.4156 -2.5475 36 1 7.5561 1.0159 -2.8603 37 1 8.5109 0.3841 -0.4129 38 1 9.2211 -0.1921 -1.9303 39 1 6.7109 -1.9858 -2.7172 40 1 7.1934 -3.4558 -1.8480 41 1 8.8909 -1.7140 -3.6710 42 1 8.7991 -3.4968 -3.5653 43 1 10.9924 -3.0778 -5.5366 44 1 9.1902 -3.3127 -0.1859 45 1 10.0074 -1.7179 -0.0937 46 1 6.8022 -2.8918 0.2676 47 1 7.6532 -1.6008 1.1389 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045956102.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:22 Heat of formation + Delta-G solvation = 153.701206 kcal Electronic energy + Delta-G solvation = -30498.473278 eV Core-core repulsion = 26528.695941 eV Total energy + Delta-G solvation = -3969.777336 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.67922 -40.52437 -38.58839 -36.27203 -35.43878 -33.46090 -33.40320 -32.85610 -30.57893 -29.23663 -28.57699 -27.45043 -26.12398 -25.03003 -24.37412 -23.58943 -22.96254 -21.23916 -20.02392 -19.65424 -18.41606 -17.94692 -17.75276 -16.92299 -16.67865 -16.18669 -15.52182 -15.15041 -14.62034 -14.37631 -14.30636 -14.23508 -13.90034 -13.69511 -13.63898 -13.41824 -12.88913 -12.53375 -12.41596 -12.29141 -11.93558 -11.84768 -11.72959 -11.39872 -11.33272 -11.04383 -10.90176 -10.83130 -10.71468 -10.63254 -10.39335 -10.14483 -10.07979 -9.91139 -9.78784 -9.62171 -9.57245 -9.48894 -8.56000 -8.53813 -6.75974 -5.64801 -2.98127 0.73285 1.23703 1.45123 2.61409 2.98924 3.43188 3.48655 3.51113 3.74125 3.79936 4.36978 4.48576 4.55085 4.67496 4.82667 5.00511 5.06324 5.17462 5.25060 5.27832 5.36063 5.48018 5.57974 5.62336 5.66037 5.76111 5.84000 6.00369 6.03959 6.06830 6.11765 6.22190 6.34691 6.44676 6.48337 6.57574 6.61798 6.65017 6.79016 6.89492 7.00756 7.10170 7.32154 7.63937 7.75165 7.81153 7.91689 8.03170 8.31422 9.27836 9.88667 10.56113 11.46402 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.028407 B = 0.002859 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.431017 B = 9790.115155 C = 9945.908893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.136 5.136 3 N -0.063 5.063 4 N -0.246 5.246 5 C 0.139 3.861 6 C 0.611 3.389 7 O -0.507 6.507 8 N -0.573 5.573 9 C 0.092 3.908 10 C -0.126 4.126 11 C -0.122 4.122 12 C -0.090 4.090 13 C -0.098 4.098 14 C -0.135 4.135 15 C 0.183 3.817 16 N -0.602 5.602 17 C -0.225 4.225 18 H 0.077 0.923 19 C -0.009 4.009 20 N -0.920 5.920 21 Si 0.910 3.090 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C 0.148 3.852 26 C 0.144 3.856 27 N -0.250 5.250 28 H 0.105 0.895 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.051 0.949 41 H 0.036 0.964 42 H 0.049 0.951 43 H 0.250 0.750 44 H 0.018 0.982 45 H 0.040 0.960 46 H 0.096 0.904 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.452 9.822 11.433 25.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.049 5.049 3 N -0.056 5.056 4 N -0.121 5.121 5 C -0.145 4.145 6 C 0.392 3.608 7 O -0.378 6.378 8 N -0.305 5.305 9 C -0.033 4.033 10 C -0.165 4.165 11 C -0.159 4.159 12 C -0.128 4.128 13 C -0.100 4.100 14 C -0.173 4.173 15 C 0.059 3.941 16 N -0.328 5.328 17 C -0.353 4.353 18 H 0.095 0.905 19 C -0.205 4.205 20 N -0.568 5.568 21 Si 0.741 3.259 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C 0.021 3.979 26 C 0.024 3.976 27 N -0.104 5.104 28 H 0.124 0.876 29 H 0.132 0.868 30 H 0.134 0.866 31 H 0.115 0.885 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.103 0.897 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.054 0.946 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.036 0.964 45 H 0.059 0.941 46 H 0.115 0.885 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.745 9.630 11.189 25.461 hybrid contribution 1.020 -0.405 -0.509 1.209 sum -19.725 9.226 10.681 24.254 Atomic orbital electron populations 1.22542 0.68591 1.07151 1.06456 1.50229 1.11079 1.00732 1.42826 1.78956 0.96860 1.14291 1.15511 1.76262 1.09084 1.10121 1.16651 1.25375 0.93096 0.90230 1.05811 1.16346 0.80693 0.85592 0.78167 1.90849 1.85137 1.13215 1.48596 1.47610 1.04914 1.07732 1.70218 1.21621 1.03767 0.79417 0.98473 1.22620 0.99819 0.98446 0.95615 1.21308 0.96845 0.99787 0.98001 1.20602 0.98888 0.93143 1.00157 1.20673 0.96597 0.97065 0.95615 1.23074 0.99375 0.98295 0.96560 1.21134 0.82262 1.00579 0.90155 1.44430 1.02957 1.84994 1.00424 1.19069 0.81834 1.42049 0.92351 0.90509 1.24782 0.97609 1.02404 0.95751 1.69982 1.30919 1.56456 0.99449 0.86075 0.84605 0.77310 0.77958 1.20572 1.21881 1.21888 1.21857 0.90909 0.95754 0.89384 1.20742 0.83126 0.95614 0.98133 1.75108 1.02484 1.14284 1.18494 0.87647 0.86795 0.86605 0.88476 0.90917 0.92088 0.91172 0.91368 0.92901 0.92714 0.89705 0.91869 0.92982 0.94579 0.93289 0.93920 0.96446 0.94146 0.88542 0.90882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.26 11.62 59.84 0.70 0.95 16 2 N -0.14 -1.26 4.39 -16.65 -0.07 -1.34 16 3 N -0.06 -0.69 13.23 60.35 0.80 0.11 16 4 N -0.25 -3.11 8.27 32.10 0.27 -2.85 16 5 C 0.14 1.94 7.78 -156.24 -1.22 0.73 16 6 C 0.61 9.54 7.71 -12.06 -0.09 9.45 16 7 O -0.51 -9.37 16.54 5.34 0.09 -9.28 16 8 N -0.57 -8.05 2.63 -176.90 -0.47 -8.51 16 9 C 0.09 1.11 4.49 -4.59 -0.02 1.09 16 10 C -0.13 -1.57 6.27 -24.61 -0.15 -1.72 16 11 C -0.12 -1.85 5.26 -27.66 -0.15 -2.00 16 12 C -0.09 -1.49 3.96 -29.30 -0.12 -1.60 16 13 C -0.10 -1.67 0.60 -155.49 -0.09 -1.77 16 14 C -0.14 -2.68 5.33 -24.67 -0.13 -2.82 16 15 C 0.18 4.51 4.61 -2.83 -0.01 4.50 16 16 N -0.60 -15.18 2.86 -169.17 -0.48 -15.66 16 17 C -0.22 -6.23 10.28 -15.09 -0.16 -6.38 16 18 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 19 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 20 N -0.92 -27.30 10.34 55.49 0.57 -26.73 16 21 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 C 0.15 2.99 5.83 -1.63 -0.01 2.98 16 26 C 0.14 2.12 4.68 -6.05 -0.03 2.10 16 27 N -0.25 -3.19 12.17 32.11 0.39 -2.80 16 28 H 0.11 0.13 8.14 -51.93 -0.42 -0.30 16 29 H 0.11 0.16 8.14 -51.93 -0.42 -0.27 16 30 H 0.12 0.04 8.14 -51.93 -0.42 -0.38 16 31 H 0.10 1.14 4.89 -52.00 -0.25 0.89 16 32 H 0.07 0.79 7.12 -51.91 -0.37 0.42 16 33 H 0.06 0.79 7.40 -52.02 -0.38 0.40 16 34 H 0.07 0.77 8.14 -51.94 -0.42 0.35 16 35 H 0.07 1.15 5.13 -52.32 -0.27 0.89 16 36 H 0.05 0.81 8.20 -51.52 -0.42 0.39 16 37 H 0.05 0.79 6.81 -51.58 -0.35 0.44 16 38 H 0.08 1.72 6.95 -51.43 -0.36 1.36 16 39 H 0.06 1.23 5.79 -52.74 -0.31 0.92 16 40 H 0.05 1.06 7.89 -51.38 -0.41 0.66 16 41 H 0.04 0.97 7.59 -52.08 -0.40 0.57 16 42 H 0.05 1.37 7.21 -52.03 -0.38 0.99 16 43 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.02 0.36 7.99 -52.09 -0.42 -0.06 16 45 H 0.04 0.78 7.98 -52.10 -0.42 0.36 16 46 H 0.10 1.54 6.72 -51.56 -0.35 1.20 16 47 H 0.07 0.92 8.14 -51.37 -0.42 0.50 16 LS Contribution 359.73 15.07 5.42 5.42 Total: -1.00 -34.42 359.73 -6.81 -41.23 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -6.72 Total: -2.01 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -1.58 Total: 5.14 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: 1.01 Total: -57.78 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.09 Total: -9.28 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.42 -6.81 -41.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045956102.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.926 kcal (2) G-P(sol) polarization free energy of solvation -34.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds