Wall clock time and date at job start Tue Mar 31 2020 18:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.28722 * 125.31833 * 2 1 4 4 N 1.28983 * 108.99042 * 180.02562 * 3 2 1 5 5 C 1.34188 * 107.25265 * 359.97438 * 4 3 2 6 6 C 1.48003 * 126.70409 * 179.97438 * 5 4 3 7 7 O 1.21531 * 120.00267 * 186.44475 * 6 5 4 8 8 N 1.35208 * 119.99526 * 6.45259 * 6 5 4 9 9 C 1.43348 * 119.98383 * 356.84243 * 8 6 5 10 10 C 1.55113 * 116.04216 * 269.80373 * 9 8 6 11 11 C 1.54905 * 109.92126 * 320.36403 * 10 9 8 12 12 C 1.49062 * 111.27114 * 318.31032 * 11 10 9 13 13 C 1.51751 * 108.99032 * 97.06829 * 12 11 10 14 14 C 1.55398 * 110.77622 * 50.53715 * 13 12 11 15 15 C 1.54502 * 102.15026 * 69.44343 * 14 13 12 16 16 N 1.47279 * 106.07617 * 29.84655 * 15 14 13 17 17 C 1.36864 * 125.56965 * 175.71741 * 16 15 14 18 18 H 1.08001 * 119.99927 * 180.02562 * 17 16 15 19 19 C 1.38817 * 119.99891 * 0.02566 * 17 16 15 20 20 N 1.31613 * 120.00197 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99580 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47101 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47369 * 119.99962 * 21 19 17 24 24 H 1.48498 * 109.46886 * 239.99995 * 21 19 17 25 25 C 1.47376 * 108.55792 * 355.98198 * 16 15 14 26 26 C 1.45441 * 117.01851 * 280.94262 * 13 12 11 27 27 N 1.28874 * 125.32558 * 180.31306 * 2 1 3 28 28 H 1.09005 * 109.47152 * 90.02966 * 1 2 3 29 29 H 1.08997 * 109.47404 * 210.02185 * 1 2 3 30 30 H 1.08995 * 109.47483 * 330.02992 * 1 2 3 31 31 H 1.08881 * 108.39729 * 31.57424 * 9 8 6 32 32 H 1.09028 * 107.84083 * 148.45869 * 9 8 6 33 33 H 1.08835 * 109.67487 * 80.69810 * 10 9 8 34 34 H 1.08979 * 109.00129 * 200.51008 * 10 9 8 35 35 H 1.08299 * 108.31739 * 81.55088 * 11 10 9 36 36 H 1.09718 * 108.50291 * 198.45502 * 11 10 9 37 37 H 1.09621 * 110.37569 * 335.81336 * 12 11 10 38 38 H 1.09886 * 109.79265 * 217.31891 * 12 11 10 39 39 H 1.07539 * 114.34607 * 308.02741 * 14 13 12 40 40 H 1.09965 * 109.33697 * 185.06624 * 14 13 12 41 41 H 1.08737 * 109.97670 * 270.76087 * 15 14 13 42 42 H 1.08815 * 109.85976 * 148.83150 * 15 14 13 43 43 H 0.96998 * 120.00172 * 179.97438 * 20 19 17 44 44 H 1.08709 * 110.85971 * 94.54367 * 25 16 15 45 45 H 1.08699 * 110.80127 * 218.56657 * 25 16 15 46 46 H 1.09642 * 109.62583 * 169.31731 * 26 13 12 47 47 H 1.09983 * 109.35753 * 287.33406 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2091 1.0503 0.0000 4 7 3.4469 0.6877 -0.0005 5 6 3.4686 -0.6540 -0.0003 6 6 4.6693 -1.5193 -0.0013 7 8 4.5507 -2.7231 -0.1191 8 7 5.8981 -0.9705 0.1290 9 6 6.0427 0.4539 0.2001 10 6 6.2378 1.1869 -1.1529 11 6 7.1678 0.3575 -2.0732 12 6 8.3141 -0.2137 -1.3104 13 6 7.9882 -1.6455 -0.9278 14 6 7.5087 -2.4517 -2.1667 15 6 8.8039 -2.5662 -3.0013 16 7 9.9140 -2.5662 -2.0335 17 6 11.2373 -2.7348 -2.3398 18 1 11.9794 -2.7193 -1.5553 19 6 11.6255 -2.9256 -3.6589 20 7 10.7211 -2.9449 -4.6149 21 14 13.4314 -3.1563 -4.0768 22 1 14.2393 -3.0944 -2.8323 23 1 13.6242 -4.4771 -4.7275 24 1 13.8666 -2.0801 -5.0028 25 6 9.3594 -2.3611 -0.6836 26 6 7.1085 -1.8404 0.2139 27 7 2.2101 -1.0514 -0.0057 28 1 -0.3634 -0.0005 -1.0277 29 1 -0.3634 -0.8897 0.5141 30 1 -0.3634 0.8902 0.5133 31 1 5.1577 0.8654 0.6827 32 1 6.9055 0.6710 0.8302 33 1 5.2736 1.3211 -1.6394 34 1 6.6892 2.1612 -0.9668 35 1 6.5759 -0.4156 -2.5475 36 1 7.5561 1.0159 -2.8603 37 1 8.5109 0.3841 -0.4129 38 1 9.2211 -0.1921 -1.9303 39 1 6.7109 -1.9858 -2.7172 40 1 7.1934 -3.4558 -1.8480 41 1 8.8909 -1.7140 -3.6710 42 1 8.7991 -3.4968 -3.5653 43 1 10.9924 -3.0778 -5.5366 44 1 9.1902 -3.3127 -0.1859 45 1 10.0074 -1.7179 -0.0937 46 1 6.8022 -2.8918 0.2676 47 1 7.6532 -1.6008 1.1389 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045956102.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:21 Heat of formation + Delta-G solvation = 130.522311 kcal Electronic energy + Delta-G solvation = -30499.478390 eV Core-core repulsion = 26528.695941 eV Total energy + Delta-G solvation = -3970.782449 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.53194 -41.82413 -40.00367 -37.61496 -36.28629 -35.00261 -34.37953 -34.22558 -32.34701 -30.51576 -29.77601 -28.65970 -27.58315 -26.22051 -25.86110 -24.86847 -23.96029 -22.53950 -21.84621 -20.71760 -19.85965 -18.84624 -18.71388 -18.56724 -17.74984 -17.41143 -16.94384 -16.58552 -16.41272 -15.73067 -15.43689 -15.36923 -15.14034 -14.82910 -14.38708 -14.29447 -14.16898 -14.01016 -13.79320 -13.73156 -13.26391 -13.13988 -12.88579 -12.86705 -12.80907 -12.69143 -12.26899 -12.18321 -12.01434 -11.97087 -11.85658 -11.79503 -11.51999 -11.46206 -11.33863 -11.12803 -11.03535 -10.93621 -10.68054 -9.73021 -8.85036 -7.80930 -5.16016 -0.14960 0.28099 0.82356 1.46678 1.47654 1.57916 1.61923 1.87815 2.51922 2.72928 3.04926 3.37666 3.49915 3.75435 3.83378 3.83997 3.98398 4.08495 4.15718 4.21815 4.22873 4.24830 4.38008 4.49531 4.57813 4.58154 4.62966 4.69038 4.77806 4.85870 4.86643 4.91951 5.00556 5.06176 5.13014 5.14190 5.22381 5.35048 5.37754 5.46585 5.51080 5.64014 5.66650 5.71944 5.80318 6.20716 6.21793 6.76328 7.06755 7.12407 7.80875 8.47660 9.29708 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.028407 B = 0.002859 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.431017 B = 9790.115155 C = 9945.908893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.115 5.115 3 N -0.064 5.064 4 N -0.252 5.252 5 C 0.121 3.879 6 C 0.609 3.391 7 O -0.546 6.546 8 N -0.567 5.567 9 C 0.088 3.912 10 C -0.115 4.115 11 C -0.119 4.119 12 C -0.083 4.083 13 C -0.072 4.072 14 C -0.121 4.121 15 C 0.198 3.802 16 N -0.620 5.620 17 C -0.232 4.232 18 H 0.086 0.914 19 C -0.071 4.071 20 N -0.954 5.954 21 Si 0.977 3.023 22 H -0.262 1.262 23 H -0.297 1.297 24 H -0.294 1.294 25 C 0.141 3.859 26 C 0.144 3.856 27 N -0.267 5.267 28 H 0.126 0.874 29 H 0.130 0.870 30 H 0.145 0.855 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.056 0.944 34 H 0.094 0.906 35 H 0.045 0.955 36 H 0.046 0.954 37 H 0.088 0.912 38 H 0.043 0.957 39 H 0.066 0.934 40 H 0.044 0.956 41 H 0.004 0.996 42 H 0.004 0.996 43 H 0.243 0.757 44 H 0.024 0.976 45 H 0.058 0.942 46 H 0.084 0.916 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.511 11.763 13.953 28.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.031 5.031 3 N -0.057 5.057 4 N -0.126 5.126 5 C -0.163 4.163 6 C 0.391 3.609 7 O -0.420 6.420 8 N -0.297 5.297 9 C -0.036 4.036 10 C -0.153 4.153 11 C -0.157 4.157 12 C -0.120 4.120 13 C -0.073 4.073 14 C -0.159 4.159 15 C 0.073 3.927 16 N -0.346 5.346 17 C -0.361 4.361 18 H 0.104 0.896 19 C -0.264 4.264 20 N -0.604 5.604 21 Si 0.806 3.194 22 H -0.186 1.186 23 H -0.224 1.224 24 H -0.222 1.222 25 C 0.016 3.984 26 C 0.023 3.977 27 N -0.122 5.122 28 H 0.144 0.856 29 H 0.149 0.851 30 H 0.163 0.837 31 H 0.124 0.876 32 H 0.115 0.885 33 H 0.075 0.925 34 H 0.113 0.887 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.106 0.894 38 H 0.062 0.938 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.022 0.978 42 H 0.022 0.978 43 H 0.053 0.947 44 H 0.042 0.958 45 H 0.076 0.924 46 H 0.103 0.897 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -21.816 11.616 13.758 28.287 hybrid contribution 1.189 -0.985 -1.298 2.018 sum -20.627 10.630 12.460 26.338 Atomic orbital electron populations 1.23239 0.65127 1.09489 1.08525 1.50764 1.12645 0.99484 1.40159 1.78878 0.96580 1.14573 1.15655 1.76193 1.10066 1.09325 1.17046 1.25020 0.92962 0.90614 1.07672 1.16585 0.81533 0.85340 0.77411 1.90823 1.85831 1.14895 1.50489 1.47600 1.04189 1.08505 1.69438 1.21804 1.05354 0.77964 0.98484 1.22552 0.98847 0.98938 0.95012 1.21211 0.96668 0.99393 0.98417 1.20510 0.97503 0.93111 1.00870 1.20563 0.95193 0.96697 0.94867 1.22904 0.96911 0.98785 0.97325 1.20751 0.84761 0.96877 0.90309 1.44674 1.02493 1.84847 1.02582 1.19498 0.83261 1.40677 0.92647 0.89572 1.25643 1.01764 1.03093 0.95871 1.70219 1.32795 1.58028 0.99336 0.85018 0.79927 0.76472 0.77996 1.18638 1.22427 1.22152 1.22074 0.92560 0.96676 0.87133 1.20645 0.83298 0.95526 0.98202 1.75066 1.02525 1.15679 1.18971 0.85587 0.85148 0.83684 0.87562 0.88509 0.92539 0.88741 0.93654 0.93526 0.89382 0.93834 0.91534 0.93694 0.97768 0.97765 0.94726 0.95833 0.92377 0.89744 0.87176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.18 11.62 127.77 1.49 1.67 16 2 N -0.12 -1.88 4.39 -206.60 -0.91 -2.79 16 3 N -0.06 -1.25 13.23 37.02 0.49 -0.76 16 4 N -0.25 -5.87 8.27 -52.36 -0.43 -6.30 16 5 C 0.12 3.23 7.78 137.15 1.07 4.29 16 6 C 0.61 18.54 7.71 86.76 0.67 19.21 16 7 O -0.55 -20.32 16.54 -3.81 -0.06 -20.38 16 8 N -0.57 -14.83 2.63 -831.63 -2.19 -17.01 16 9 C 0.09 1.84 4.49 87.69 0.39 2.23 16 10 C -0.11 -2.56 6.27 31.97 0.20 -2.36 16 11 C -0.12 -3.54 5.26 29.99 0.16 -3.38 16 12 C -0.08 -2.61 3.96 28.93 0.11 -2.50 16 13 C -0.07 -2.39 0.60 -52.82 -0.03 -2.42 16 14 C -0.12 -4.99 5.33 31.93 0.17 -4.82 16 15 C 0.20 10.33 4.61 86.74 0.40 10.73 16 16 N -0.62 -32.02 2.86 -689.15 -1.97 -33.99 16 17 C -0.23 -13.04 10.28 84.05 0.86 -12.17 16 18 H 0.09 4.58 7.83 -2.91 -0.02 4.56 16 19 C -0.07 -4.14 5.49 84.86 0.47 -3.67 16 20 N -0.95 -59.34 10.34 21.65 0.22 -59.11 16 21 Si 0.98 46.75 29.55 68.60 2.03 48.78 16 22 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 23 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 24 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 25 C 0.14 5.59 5.83 87.47 0.51 6.10 16 26 C 0.14 3.95 4.68 83.53 0.39 4.34 16 27 N -0.27 -6.47 12.17 -52.32 -0.64 -7.10 16 28 H 0.13 -0.10 8.14 -2.38 -0.02 -0.12 16 29 H 0.13 -0.04 8.14 -2.39 -0.02 -0.06 16 30 H 0.15 -0.44 8.14 -2.39 -0.02 -0.46 16 31 H 0.11 2.16 4.89 -2.45 -0.01 2.15 16 32 H 0.10 1.62 7.12 -2.37 -0.02 1.60 16 33 H 0.06 1.34 7.40 -2.47 -0.02 1.32 16 34 H 0.09 1.71 8.14 -2.40 -0.02 1.69 16 35 H 0.04 1.55 5.13 -2.76 -0.01 1.54 16 36 H 0.05 1.43 8.20 -2.00 -0.02 1.41 16 37 H 0.09 2.22 6.81 -2.06 -0.01 2.21 16 38 H 0.04 1.76 6.95 -1.91 -0.01 1.75 16 39 H 0.07 2.70 5.79 -3.15 -0.02 2.68 16 40 H 0.04 1.90 7.89 -1.87 -0.01 1.88 16 41 H 0.00 0.24 7.59 -2.53 -0.02 0.22 16 42 H 0.00 0.25 7.21 -2.48 -0.02 0.23 16 43 H 0.24 14.78 8.31 -92.71 -0.77 14.01 16 44 H 0.02 0.93 7.99 -2.54 -0.02 0.91 16 45 H 0.06 2.11 7.98 -2.55 -0.02 2.09 16 46 H 0.08 2.61 6.72 -2.04 -0.01 2.60 16 47 H 0.11 2.32 8.14 -1.86 -0.02 2.31 16 Total: -1.00 -79.30 359.73 4.41 -74.89 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: 1.00 Total: 6.55 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: 6.86 Total: 17.24 kcal Atomic # 7 Polarization: -121.65 SS G_CDS: -5.42 Total: -127.07 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.06 Total: -20.38 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -79.30 4.41 -74.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045956102.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.413 kcal (2) G-P(sol) polarization free energy of solvation -79.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds