Wall clock time and date at job start Tue Mar 31 2020 18:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34588 * 125.74948 * 2 1 4 4 N 1.30868 * 107.62330 * 179.73595 * 3 2 1 5 5 C 1.34547 * 107.27128 * 0.36682 * 4 3 2 6 6 C 1.47875 * 126.04894 * 179.89668 * 5 4 3 7 7 O 1.21553 * 120.00019 * 186.04977 * 6 5 4 8 8 N 1.34780 * 119.99910 * 6.04692 * 6 5 4 9 9 C 1.47082 * 120.87819 * 5.55633 * 8 6 5 10 10 C 1.53239 * 108.51509 * 231.20113 * 9 8 6 11 11 N 1.46893 * 109.34479 * 306.17217 * 10 9 8 12 12 C 1.46901 * 111.00027 * 187.25492 * 11 10 9 13 13 H 1.09001 * 110.64128 * 296.11627 * 12 11 10 14 14 C 1.55156 * 110.72296 * 59.26149 * 12 11 10 15 15 C 1.54914 * 101.58109 * 153.86214 * 14 12 11 16 16 N 1.47420 * 104.83485 * 322.99547 * 15 14 12 17 17 C 1.36936 * 125.64822 * 204.09157 * 16 15 14 18 18 H 1.07999 * 120.00055 * 168.06769 * 17 16 15 19 19 C 1.38811 * 119.99916 * 348.06737 * 17 16 15 20 20 N 1.31624 * 119.99800 * 324.58652 * 19 17 16 21 21 Si 1.86798 * 120.00144 * 144.59182 * 19 17 16 22 22 H 1.48503 * 109.47322 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.46835 * 239.99928 * 21 19 17 24 24 H 1.48499 * 109.47399 * 120.00087 * 21 19 17 25 25 C 1.47026 * 108.70372 * 24.35331 * 16 15 14 26 26 C 1.46898 * 111.26950 * 63.10562 * 11 10 9 27 27 C 1.47075 * 120.87871 * 185.57434 * 8 6 5 28 28 N 1.28856 * 125.74619 * 179.97438 * 2 1 3 29 29 H 1.09006 * 109.46975 * 270.01335 * 1 2 3 30 30 H 1.08996 * 109.47156 * 30.01425 * 1 2 3 31 31 H 1.09001 * 109.47385 * 150.01905 * 1 2 3 32 32 H 1.08000 * 126.18362 * 359.96613 * 3 2 1 33 33 H 1.08999 * 109.62609 * 111.49911 * 9 8 6 34 34 H 1.08991 * 109.63051 * 350.91032 * 9 8 6 35 35 H 1.09004 * 109.48935 * 186.21121 * 10 9 8 36 36 H 1.09008 * 109.49349 * 66.13747 * 10 9 8 37 37 H 1.09003 * 110.99736 * 35.79360 * 14 12 11 38 38 H 1.08995 * 111.00730 * 271.94335 * 14 12 11 39 39 H 1.09003 * 110.36273 * 204.15155 * 15 14 12 40 40 H 1.09000 * 110.36070 * 81.83526 * 15 14 12 41 41 H 0.96995 * 119.99757 * 354.39209 * 20 19 17 42 42 H 1.08999 * 109.87826 * 118.13444 * 25 16 15 43 43 H 1.09000 * 109.88080 * 239.29692 * 25 16 15 44 44 H 1.09001 * 109.49050 * 56.85646 * 26 11 10 45 45 H 1.09000 * 109.49302 * 176.93585 * 26 11 10 46 46 H 1.09008 * 109.62809 * 248.50226 * 27 8 6 47 47 H 1.08995 * 109.62973 * 9.08578 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2513 1.0923 0.0000 4 7 3.4950 0.6852 0.0057 5 6 3.4750 -0.6602 0.0011 6 6 4.6574 -1.5481 0.0027 7 8 4.5153 -2.7497 -0.1129 8 7 5.8928 -1.0250 0.1323 9 6 6.0812 0.4100 0.3945 10 6 7.0786 0.9647 -0.6281 11 7 8.3074 0.1606 -0.5949 12 6 9.3523 0.7609 -1.4349 13 1 9.0478 0.7666 -2.4815 14 6 9.6866 2.1972 -0.9527 15 6 11.1479 2.3572 -1.4415 16 7 11.7575 1.0287 -1.2503 17 6 13.0948 0.7792 -1.0937 18 1 13.4280 -0.1955 -0.7694 19 6 14.0222 1.7793 -1.3519 20 7 13.8096 2.6384 -2.3262 21 14 15.5720 1.9058 -0.3168 22 1 15.5731 0.8297 0.7066 23 1 15.6108 3.2287 0.3567 24 1 16.7640 1.7599 -1.1904 25 6 10.6924 0.0152 -1.2617 26 6 8.0459 -1.2291 -0.9928 27 6 7.0881 -1.8738 0.0148 28 7 2.2177 -1.0458 0.0005 29 1 -0.3633 0.0002 1.0277 30 1 -0.3633 0.8898 -0.5140 31 1 -0.3634 -0.8901 -0.5135 32 1 1.9163 2.1190 -0.0005 33 1 6.4737 0.5496 1.4017 34 1 5.1279 0.9287 0.2947 35 1 7.3145 1.9999 -0.3814 36 1 6.6407 0.9188 -1.6252 37 1 9.6281 2.2681 0.1334 38 1 9.0337 2.9303 -1.4263 39 1 11.6689 3.1036 -0.8419 40 1 11.1670 2.6352 -2.4953 41 1 13.0473 2.5247 -2.9152 42 1 10.8455 -0.6740 -2.0921 43 1 10.6910 -0.5317 -0.3188 44 1 7.5945 -1.2445 -1.9848 45 1 8.9833 -1.7849 -1.0106 46 1 7.5774 -1.9536 0.9857 47 1 6.8004 -2.8649 -0.3359 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046025902.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:18 Heat of formation + Delta-G solvation = 123.555837 kcal Electronic energy + Delta-G solvation = -29137.436506 eV Core-core repulsion = 25166.351969 eV Total energy + Delta-G solvation = -3971.084538 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.90691 -40.15642 -38.57038 -36.73839 -35.22008 -34.21785 -32.20992 -32.09463 -31.32624 -29.12849 -28.79556 -27.79187 -25.98639 -24.57973 -23.75365 -23.48165 -22.61755 -21.32689 -20.05287 -19.87738 -19.39285 -17.94227 -17.42601 -17.23271 -16.95808 -16.40259 -15.66083 -15.46945 -15.09929 -14.77074 -14.72554 -14.28703 -13.98688 -13.81058 -13.79146 -13.67291 -13.31974 -13.02000 -12.96833 -12.67643 -12.12923 -12.08042 -11.67425 -11.66173 -11.34126 -11.20796 -10.91180 -10.65499 -10.55130 -10.45158 -10.37235 -10.28770 -10.10211 -10.00163 -9.98732 -9.80771 -9.58045 -8.82372 -8.25170 -8.10671 -6.88740 -6.10910 -3.00412 1.02191 1.65024 1.71878 2.68042 3.09561 3.57818 3.60285 3.63074 3.75286 3.84963 4.02750 4.21826 4.39620 4.52635 4.67212 4.70297 4.92648 4.99873 5.10673 5.24324 5.31077 5.33645 5.38092 5.47158 5.51912 5.60929 5.69834 5.71960 5.77874 5.84226 5.89512 5.90736 6.05510 6.15803 6.24704 6.36698 6.42095 6.55953 6.64010 6.67364 7.00959 7.11688 7.15090 7.25110 7.41816 7.54223 7.88040 7.95328 8.55246 9.07269 9.88813 10.45823 11.24197 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.030435 B = 0.002250 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.761200 B =12439.664552 C =13015.602198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.305 5.305 3 C 0.194 3.806 4 N -0.481 5.481 5 C 0.152 3.848 6 C 0.613 3.387 7 O -0.525 6.525 8 N -0.589 5.589 9 C 0.069 3.931 10 C 0.047 3.953 11 N -0.527 5.527 12 C 0.072 3.928 13 H 0.043 0.957 14 C -0.125 4.125 15 C 0.146 3.854 16 N -0.601 5.601 17 C -0.340 4.340 18 H 0.066 0.934 19 C -0.023 4.023 20 N -0.908 5.908 21 Si 1.059 2.941 22 H -0.292 1.292 23 H -0.290 1.290 24 H -0.296 1.296 25 C 0.147 3.853 26 C 0.041 3.959 27 C 0.120 3.880 28 N -0.252 5.252 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.229 0.771 33 H 0.070 0.930 34 H 0.152 0.848 35 H 0.089 0.911 36 H 0.032 0.968 37 H 0.075 0.925 38 H 0.058 0.942 39 H 0.052 0.948 40 H 0.021 0.979 41 H 0.268 0.732 42 H 0.016 0.984 43 H 0.038 0.962 44 H 0.035 0.965 45 H 0.093 0.907 46 H 0.081 0.919 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.005 -0.937 5.101 30.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.100 5.100 3 C -0.101 4.101 4 N -0.207 5.207 5 C -0.127 4.127 6 C 0.396 3.604 7 O -0.398 6.398 8 N -0.322 5.322 9 C -0.053 4.053 10 C -0.082 4.082 11 N -0.252 5.252 12 C -0.036 4.036 13 H 0.060 0.940 14 C -0.163 4.163 15 C 0.020 3.980 16 N -0.328 5.328 17 C -0.467 4.467 18 H 0.084 0.916 19 C -0.226 4.226 20 N -0.548 5.548 21 Si 0.889 3.111 22 H -0.218 1.218 23 H -0.217 1.217 24 H -0.224 1.224 25 C 0.021 3.979 26 C -0.088 4.088 27 C -0.002 4.002 28 N -0.091 5.091 29 H 0.110 0.890 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.245 0.755 33 H 0.089 0.911 34 H 0.169 0.831 35 H 0.107 0.893 36 H 0.051 0.949 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.038 0.962 41 H 0.078 0.922 42 H 0.034 0.966 43 H 0.056 0.944 44 H 0.053 0.947 45 H 0.112 0.888 46 H 0.099 0.901 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -28.364 -1.226 5.812 28.979 hybrid contribution -1.857 -0.534 -1.233 2.292 sum -30.221 -1.760 4.579 30.617 Atomic orbital electron populations 1.22289 0.72037 1.06132 1.05145 1.47381 1.09416 1.03808 1.49376 1.26707 0.86045 0.96109 1.01218 1.70801 1.19211 1.09389 1.21292 1.23758 0.92128 0.89279 1.07576 1.16341 0.80904 0.85613 0.77524 1.90817 1.85102 1.13784 1.50127 1.47891 1.04414 1.10712 1.69186 1.23129 1.03926 0.79459 0.98810 1.22408 0.89664 0.98304 0.97810 1.62028 1.07776 1.01434 1.53976 1.22658 0.91621 0.95775 0.93522 0.93953 1.22871 0.98067 0.94017 1.01382 1.21470 0.89595 0.89372 0.97575 1.44537 1.02096 1.00179 1.85988 1.19701 0.80777 1.01276 1.44977 0.91568 1.25628 1.01885 0.96315 0.98724 1.70733 1.29294 1.41894 1.12913 0.83654 0.75539 0.75754 0.76166 1.21792 1.21692 1.22388 1.21254 0.86319 0.92073 0.98282 1.22477 0.99534 0.90541 0.96209 1.21835 0.83663 0.94233 1.00518 1.74369 1.02716 1.13254 1.18767 0.88975 0.87821 0.88088 0.75526 0.91128 0.83141 0.89269 0.94934 0.90600 0.92306 0.92923 0.96164 0.92159 0.96574 0.94398 0.94701 0.88840 0.90090 0.88735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.10 11.38 59.84 0.68 0.78 16 2 N -0.30 -2.04 3.72 -69.39 -0.26 -2.30 16 3 C 0.19 1.14 12.62 -90.48 -1.14 0.00 16 4 N -0.48 -4.80 7.77 -12.36 -0.10 -4.90 16 5 C 0.15 1.94 7.71 -156.35 -1.21 0.73 16 6 C 0.61 9.05 7.71 -12.31 -0.09 8.96 16 7 O -0.52 -9.17 16.57 5.32 0.09 -9.09 16 8 N -0.59 -7.92 3.01 -173.57 -0.52 -8.44 16 9 C 0.07 0.83 6.51 -3.60 -0.02 0.81 16 10 C 0.05 0.61 5.46 -3.70 -0.02 0.59 16 11 N -0.53 -8.01 4.45 -224.14 -1.00 -9.01 16 12 C 0.07 1.29 2.64 -65.87 -0.17 1.12 16 13 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 14 C -0.12 -2.28 5.31 -24.58 -0.13 -2.41 16 15 C 0.15 3.46 5.37 -2.53 -0.01 3.44 16 16 N -0.60 -15.70 3.33 -170.06 -0.57 -16.27 16 17 C -0.34 -9.88 9.95 -15.06 -0.15 -10.03 16 18 H 0.07 1.93 8.03 -52.49 -0.42 1.51 16 19 C -0.02 -0.68 4.93 -17.43 -0.09 -0.77 16 20 N -0.91 -27.84 12.90 55.49 0.72 -27.13 16 21 Si 1.06 25.94 30.04 -169.99 -5.11 20.84 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.30 -7.18 7.11 56.52 0.40 -6.78 16 25 C 0.15 3.18 5.74 -3.06 -0.02 3.17 16 26 C 0.04 0.58 5.47 -3.70 -0.02 0.56 16 27 C 0.12 1.57 6.58 -3.60 -0.02 1.54 16 28 N -0.25 -2.94 12.09 32.08 0.39 -2.55 16 29 H 0.09 -0.01 8.14 -51.93 -0.42 -0.43 16 30 H 0.10 -0.21 8.14 -51.93 -0.42 -0.63 16 31 H 0.10 0.15 8.14 -51.93 -0.42 -0.28 16 32 H 0.23 0.12 8.06 -52.49 -0.42 -0.30 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.15 1.69 3.70 -76.34 -0.28 1.41 16 35 H 0.09 1.11 6.75 -51.93 -0.35 0.76 16 36 H 0.03 0.44 8.14 -51.92 -0.42 0.02 16 37 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.06 0.93 7.93 -51.93 -0.41 0.52 16 39 H 0.05 1.36 7.86 -51.93 -0.41 0.95 16 40 H 0.02 0.51 7.07 -51.93 -0.37 0.14 16 41 H 0.27 8.26 6.58 -40.82 -0.27 8.00 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.04 0.83 7.78 -51.93 -0.40 0.43 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.09 1.33 6.87 -51.93 -0.36 0.97 16 46 H 0.08 1.03 8.14 -51.92 -0.42 0.61 16 47 H 0.09 1.24 7.10 -51.93 -0.37 0.87 16 LS Contribution 371.70 15.07 5.60 5.60 Total: -1.00 -38.02 371.70 -10.26 -48.28 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -7.09 Total: -3.55 kcal Atomic # 6 Polarization: 10.91 SS G_CDS: -2.42 Total: 8.49 kcal Atomic # 7 Polarization: -69.24 SS G_CDS: -1.34 Total: -70.58 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 25.94 SS G_CDS: -5.11 Total: 20.84 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -38.02 -10.26 -48.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046025902.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.838 kcal (2) G-P(sol) polarization free energy of solvation -38.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds