Wall clock time and date at job start Tue Mar 31 2020 18:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34588 * 125.74948 * 2 1 4 4 N 1.30868 * 107.62330 * 179.73595 * 3 2 1 5 5 C 1.34547 * 107.27128 * 0.36682 * 4 3 2 6 6 C 1.47875 * 126.04894 * 179.89668 * 5 4 3 7 7 O 1.21553 * 120.00019 * 186.04977 * 6 5 4 8 8 N 1.34780 * 119.99910 * 6.04692 * 6 5 4 9 9 C 1.47082 * 120.87819 * 5.55633 * 8 6 5 10 10 C 1.53239 * 108.51509 * 231.20113 * 9 8 6 11 11 N 1.46893 * 109.34479 * 306.17217 * 10 9 8 12 12 C 1.46901 * 111.00027 * 187.25492 * 11 10 9 13 13 H 1.09001 * 110.64128 * 296.11627 * 12 11 10 14 14 C 1.55156 * 110.72296 * 59.26149 * 12 11 10 15 15 C 1.54914 * 101.58109 * 153.86214 * 14 12 11 16 16 N 1.47420 * 104.83485 * 322.99547 * 15 14 12 17 17 C 1.36936 * 125.64822 * 204.09157 * 16 15 14 18 18 H 1.07999 * 120.00055 * 168.06769 * 17 16 15 19 19 C 1.38811 * 119.99916 * 348.06737 * 17 16 15 20 20 N 1.31624 * 119.99800 * 324.58652 * 19 17 16 21 21 Si 1.86798 * 120.00144 * 144.59182 * 19 17 16 22 22 H 1.48503 * 109.47322 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.46835 * 239.99928 * 21 19 17 24 24 H 1.48499 * 109.47399 * 120.00087 * 21 19 17 25 25 C 1.47026 * 108.70372 * 24.35331 * 16 15 14 26 26 C 1.46898 * 111.26950 * 63.10562 * 11 10 9 27 27 C 1.47075 * 120.87871 * 185.57434 * 8 6 5 28 28 N 1.28856 * 125.74619 * 179.97438 * 2 1 3 29 29 H 1.09006 * 109.46975 * 270.01335 * 1 2 3 30 30 H 1.08996 * 109.47156 * 30.01425 * 1 2 3 31 31 H 1.09001 * 109.47385 * 150.01905 * 1 2 3 32 32 H 1.08000 * 126.18362 * 359.96613 * 3 2 1 33 33 H 1.08999 * 109.62609 * 111.49911 * 9 8 6 34 34 H 1.08991 * 109.63051 * 350.91032 * 9 8 6 35 35 H 1.09004 * 109.48935 * 186.21121 * 10 9 8 36 36 H 1.09008 * 109.49349 * 66.13747 * 10 9 8 37 37 H 1.09003 * 110.99736 * 35.79360 * 14 12 11 38 38 H 1.08995 * 111.00730 * 271.94335 * 14 12 11 39 39 H 1.09003 * 110.36273 * 204.15155 * 15 14 12 40 40 H 1.09000 * 110.36070 * 81.83526 * 15 14 12 41 41 H 0.96995 * 119.99757 * 354.39209 * 20 19 17 42 42 H 1.08999 * 109.87826 * 118.13444 * 25 16 15 43 43 H 1.09000 * 109.88080 * 239.29692 * 25 16 15 44 44 H 1.09001 * 109.49050 * 56.85646 * 26 11 10 45 45 H 1.09000 * 109.49302 * 176.93585 * 26 11 10 46 46 H 1.09008 * 109.62809 * 248.50226 * 27 8 6 47 47 H 1.08995 * 109.62973 * 9.08578 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2513 1.0923 0.0000 4 7 3.4950 0.6852 0.0057 5 6 3.4750 -0.6602 0.0011 6 6 4.6574 -1.5481 0.0027 7 8 4.5153 -2.7497 -0.1129 8 7 5.8928 -1.0250 0.1323 9 6 6.0812 0.4100 0.3945 10 6 7.0786 0.9647 -0.6281 11 7 8.3074 0.1606 -0.5949 12 6 9.3523 0.7609 -1.4349 13 1 9.0478 0.7666 -2.4815 14 6 9.6866 2.1972 -0.9527 15 6 11.1479 2.3572 -1.4415 16 7 11.7575 1.0287 -1.2503 17 6 13.0948 0.7792 -1.0937 18 1 13.4280 -0.1955 -0.7694 19 6 14.0222 1.7793 -1.3519 20 7 13.8096 2.6384 -2.3262 21 14 15.5720 1.9058 -0.3168 22 1 15.5731 0.8297 0.7066 23 1 15.6108 3.2287 0.3567 24 1 16.7640 1.7599 -1.1904 25 6 10.6924 0.0152 -1.2617 26 6 8.0459 -1.2291 -0.9928 27 6 7.0881 -1.8738 0.0148 28 7 2.2177 -1.0458 0.0005 29 1 -0.3633 0.0002 1.0277 30 1 -0.3633 0.8898 -0.5140 31 1 -0.3634 -0.8901 -0.5135 32 1 1.9163 2.1190 -0.0005 33 1 6.4737 0.5496 1.4017 34 1 5.1279 0.9287 0.2947 35 1 7.3145 1.9999 -0.3814 36 1 6.6407 0.9188 -1.6252 37 1 9.6281 2.2681 0.1334 38 1 9.0337 2.9303 -1.4263 39 1 11.6689 3.1036 -0.8419 40 1 11.1670 2.6352 -2.4953 41 1 13.0473 2.5247 -2.9152 42 1 10.8455 -0.6740 -2.0921 43 1 10.6910 -0.5317 -0.3188 44 1 7.5945 -1.2445 -1.9848 45 1 8.9833 -1.7849 -1.0106 46 1 7.5774 -1.9536 0.9857 47 1 6.8004 -2.8649 -0.3359 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046025902.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:17 Heat of formation + Delta-G solvation = 97.033352 kcal Electronic energy + Delta-G solvation = -29138.586608 eV Core-core repulsion = 25166.351969 eV Total energy + Delta-G solvation = -3972.234639 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.186 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.52492 -41.27170 -39.97551 -38.22078 -36.03044 -35.41884 -33.94216 -32.83889 -32.43211 -30.91220 -29.94143 -28.65264 -27.39587 -26.06045 -24.97088 -24.59068 -23.28671 -22.32617 -21.89966 -21.23851 -20.46944 -19.54273 -18.76954 -17.86049 -17.78704 -17.22643 -17.00245 -16.60613 -16.35709 -16.00282 -15.77040 -15.70508 -15.36422 -15.00716 -14.96533 -14.93316 -14.45447 -14.12345 -13.92270 -13.78038 -13.46480 -13.28544 -13.06157 -12.66334 -12.59498 -12.56502 -12.44461 -12.32714 -12.00593 -11.87050 -11.79154 -11.70617 -11.64751 -11.55676 -11.50444 -10.73653 -10.62900 -10.43705 -9.91483 -9.33010 -9.02980 -8.40745 -5.26300 0.23939 1.05608 1.23998 1.58715 1.65762 1.84354 1.85529 2.14252 2.59371 2.74044 2.97595 3.11705 3.37648 3.57608 3.62476 3.77318 3.89483 3.92712 4.02320 4.16393 4.23592 4.30474 4.36875 4.37663 4.41339 4.44669 4.51663 4.58792 4.68802 4.71040 4.78042 4.83500 4.89713 4.91075 4.96234 5.03166 5.06346 5.10549 5.29164 5.33910 5.43079 5.68552 5.83440 5.97075 6.06517 6.20197 6.29747 6.74447 6.88379 7.04504 7.71415 8.30402 8.93924 Molecular weight = 334.19amu Principal moments of inertia in cm(-1) A = 0.030435 B = 0.002250 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.761200 B =12439.664552 C =13015.602198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.298 5.298 3 C 0.213 3.787 4 N -0.503 5.503 5 C 0.123 3.877 6 C 0.608 3.392 7 O -0.566 6.566 8 N -0.589 5.589 9 C 0.074 3.926 10 C 0.050 3.950 11 N -0.529 5.529 12 C 0.090 3.910 13 H 0.044 0.956 14 C -0.104 4.104 15 C 0.147 3.853 16 N -0.624 5.624 17 C -0.354 4.354 18 H 0.057 0.943 19 C -0.074 4.074 20 N -0.932 5.932 21 Si 1.113 2.887 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.290 1.290 25 C 0.146 3.854 26 C 0.046 3.954 27 C 0.124 3.876 28 N -0.283 5.283 29 H 0.108 0.892 30 H 0.145 0.855 31 H 0.095 0.905 32 H 0.284 0.716 33 H 0.073 0.927 34 H 0.167 0.833 35 H 0.103 0.897 36 H 0.031 0.969 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.024 0.976 40 H 0.002 0.998 41 H 0.253 0.747 42 H 0.007 0.993 43 H 0.036 0.964 44 H 0.032 0.968 45 H 0.088 0.912 46 H 0.086 0.914 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.515 0.761 6.165 33.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.093 5.093 3 C -0.080 4.080 4 N -0.229 5.229 5 C -0.155 4.155 6 C 0.393 3.607 7 O -0.443 6.443 8 N -0.321 5.321 9 C -0.047 4.047 10 C -0.078 4.078 11 N -0.255 5.255 12 C -0.019 4.019 13 H 0.062 0.938 14 C -0.143 4.143 15 C 0.021 3.979 16 N -0.351 5.351 17 C -0.482 4.482 18 H 0.075 0.925 19 C -0.271 4.271 20 N -0.574 5.574 21 Si 0.938 3.062 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.218 1.218 25 C 0.020 3.980 26 C -0.083 4.083 27 C 0.001 3.999 28 N -0.125 5.125 29 H 0.127 0.873 30 H 0.163 0.837 31 H 0.113 0.887 32 H 0.299 0.701 33 H 0.091 0.909 34 H 0.183 0.817 35 H 0.121 0.879 36 H 0.049 0.951 37 H 0.099 0.901 38 H 0.111 0.889 39 H 0.043 0.957 40 H 0.020 0.980 41 H 0.063 0.937 42 H 0.025 0.975 43 H 0.054 0.946 44 H 0.050 0.950 45 H 0.107 0.893 46 H 0.104 0.896 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -30.924 0.479 6.884 31.684 hybrid contribution -1.253 -1.065 -1.585 2.284 sum -32.176 -0.586 5.299 32.615 Atomic orbital electron populations 1.22793 0.68967 1.07936 1.06809 1.47784 1.10936 1.02927 1.47664 1.27681 0.84613 0.97693 0.98043 1.70577 1.21767 1.07943 1.22634 1.23324 0.91721 0.90204 1.10282 1.16705 0.81814 0.85535 0.76662 1.90773 1.85850 1.15561 1.52088 1.47977 1.04160 1.11308 1.68653 1.23236 1.04401 0.78640 0.98455 1.22483 0.88594 0.98623 0.98123 1.61999 1.08360 1.02016 1.53099 1.22360 0.90526 0.94900 0.94071 0.93829 1.22731 0.94658 0.95063 1.01805 1.21433 0.92616 0.87696 0.96138 1.44830 1.02168 1.02227 1.85876 1.19928 0.82630 1.01150 1.44459 0.92508 1.27042 1.05048 0.96025 0.98972 1.70860 1.29387 1.43058 1.14071 0.82921 0.72084 0.76349 0.74874 1.20044 1.21088 1.21756 1.21330 0.87454 0.91551 0.97627 1.22431 0.99476 0.90009 0.96336 1.21756 0.83579 0.94117 1.00404 1.74276 1.02943 1.15806 1.19437 0.87336 0.83714 0.88660 0.70094 0.90899 0.81720 0.87898 0.95073 0.90051 0.88854 0.95747 0.97997 0.93707 0.97535 0.94578 0.94999 0.89341 0.89600 0.89072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.07 11.38 127.77 1.45 1.38 16 2 N -0.30 -3.16 3.72 -373.46 -1.39 -4.55 16 3 C 0.21 1.70 12.62 180.30 2.27 3.97 16 4 N -0.50 -8.84 7.77 -193.03 -1.50 -10.34 16 5 C 0.12 3.05 7.71 137.13 1.06 4.10 16 6 C 0.61 18.14 7.71 86.79 0.67 18.81 16 7 O -0.57 -20.53 16.57 -3.88 -0.06 -20.60 16 8 N -0.59 -15.58 3.01 -821.31 -2.47 -18.05 16 9 C 0.07 1.66 6.51 86.35 0.56 2.22 16 10 C 0.05 1.18 5.46 86.38 0.47 1.66 16 11 N -0.53 -15.35 4.45 -863.05 -3.84 -19.19 16 12 C 0.09 3.12 2.64 46.11 0.12 3.24 16 13 H 0.04 1.52 8.14 -2.39 -0.02 1.51 16 14 C -0.10 -3.64 5.31 31.99 0.17 -3.47 16 15 C 0.15 7.06 5.37 86.86 0.47 7.52 16 16 N -0.62 -33.21 3.33 -691.96 -2.30 -35.51 16 17 C -0.35 -20.95 9.95 84.03 0.84 -20.11 16 18 H 0.06 3.39 8.03 -2.91 -0.02 3.37 16 19 C -0.07 -4.38 4.93 84.86 0.42 -3.97 16 20 N -0.93 -58.41 12.90 21.65 0.28 -58.13 16 21 Si 1.11 52.71 30.04 68.60 2.06 54.77 16 22 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 23 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 24 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 25 C 0.15 6.38 5.74 86.73 0.50 6.87 16 26 C 0.05 1.28 5.47 86.38 0.47 1.75 16 27 C 0.12 3.24 6.58 86.35 0.57 3.81 16 28 N -0.28 -6.35 12.09 -52.43 -0.63 -6.98 16 29 H 0.11 -0.40 8.14 -2.38 -0.02 -0.42 16 30 H 0.14 -1.31 8.14 -2.39 -0.02 -1.33 16 31 H 0.09 0.07 8.14 -2.39 -0.02 0.05 16 32 H 0.28 -1.41 8.06 -2.91 -0.02 -1.43 16 33 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.17 3.34 3.70 -50.58 -0.19 3.15 16 35 H 0.10 2.19 6.75 -2.38 -0.02 2.18 16 36 H 0.03 0.77 8.14 -2.38 -0.02 0.75 16 37 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 38 H 0.09 2.66 7.93 -2.39 -0.02 2.64 16 39 H 0.02 1.28 7.86 -2.39 -0.02 1.26 16 40 H 0.00 0.12 7.07 -2.39 -0.02 0.10 16 41 H 0.25 16.19 6.58 -92.71 -0.61 15.58 16 42 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 43 H 0.04 1.60 7.78 -2.39 -0.02 1.58 16 44 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.09 2.52 6.87 -2.39 -0.02 2.51 16 46 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 47 H 0.09 2.46 7.10 -2.39 -0.02 2.44 16 Total: -1.00 -86.92 371.70 1.13 -85.79 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: 0.96 Total: 5.00 kcal Atomic # 6 Polarization: 17.76 SS G_CDS: 10.04 Total: 27.80 kcal Atomic # 7 Polarization: -140.90 SS G_CDS: -11.86 Total: -152.76 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.06 Total: -20.60 kcal Atomic # 14 Polarization: 52.71 SS G_CDS: 2.06 Total: 54.77 kcal Total: -86.92 1.13 -85.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046025902.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.819 kcal (2) G-P(sol) polarization free energy of solvation -86.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds