Wall clock time and date at job start Tue Mar 31 2020 19:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99930 * 2 1 4 4 H 1.48501 * 109.46931 * 270.00228 * 3 2 1 5 5 H 1.48494 * 109.46998 * 30.00454 * 3 2 1 6 6 H 1.48503 * 109.46965 * 150.00215 * 3 2 1 7 7 C 1.38815 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00007 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00101 * 359.97438 * 7 2 1 10 10 C 1.47769 * 134.40960 * 180.02562 * 9 7 2 11 11 C 1.52940 * 85.80912 * 156.10522 * 10 9 7 12 12 C 1.47770 * 134.40597 * 0.04028 * 9 7 2 13 13 C 1.54005 * 115.14782 * 266.50189 * 11 10 9 14 14 C 1.55478 * 100.77751 * 194.49506 * 13 11 10 15 15 H 1.08998 * 110.99716 * 274.81078 * 14 13 11 16 16 N 1.46506 * 110.82747 * 151.33130 * 14 13 11 17 17 C 1.34774 * 119.99877 * 160.59510 * 16 14 13 18 18 O 1.21276 * 120.00440 * 0.02562 * 17 16 14 19 19 C 1.50706 * 119.99740 * 180.02562 * 17 16 14 20 20 C 1.52998 * 109.46758 * 299.99916 * 19 17 16 21 21 C 1.53006 * 109.47091 * 180.02562 * 20 19 17 22 22 C 1.53001 * 109.46792 * 359.97438 * 21 20 19 23 23 C 1.53001 * 109.47268 * 60.00031 * 22 21 20 24 24 C 1.52996 * 109.47206 * 300.00117 * 23 22 21 25 25 C 1.53003 * 109.47364 * 300.00012 * 22 21 20 26 26 C 1.52996 * 109.46848 * 60.00043 * 25 22 21 27 27 C 1.54468 * 102.37247 * 33.11030 * 14 13 11 28 28 O 1.42543 * 116.18715 * 141.02815 * 11 10 9 29 29 H 0.96998 * 120.00336 * 359.97438 * 1 2 3 30 30 H 1.08998 * 113.81713 * 41.87840 * 10 9 7 31 31 H 1.09005 * 113.92837 * 270.33798 * 10 9 7 32 32 H 1.08996 * 113.82244 * 89.67110 * 12 9 7 33 33 H 1.09002 * 113.82203 * 318.11514 * 12 9 7 34 34 H 1.08996 * 111.15537 * 76.61087 * 13 11 10 35 35 H 1.09001 * 111.15388 * 312.37187 * 13 11 10 36 36 H 0.96996 * 119.99556 * 340.59852 * 16 14 13 37 37 H 1.08991 * 109.47642 * 299.99917 * 20 19 17 38 38 H 1.09006 * 109.47317 * 60.00326 * 20 19 17 39 39 H 1.09004 * 109.46708 * 240.00376 * 21 20 19 40 40 H 1.08993 * 109.47332 * 119.99628 * 21 20 19 41 41 H 1.09002 * 109.46916 * 179.97438 * 22 21 20 42 42 H 1.08992 * 109.47210 * 179.97438 * 23 22 21 43 43 H 1.09001 * 109.47028 * 59.99783 * 23 22 21 44 44 H 1.08996 * 109.47160 * 239.99940 * 24 23 22 45 45 H 1.08994 * 109.47547 * 119.99397 * 24 23 22 46 46 H 1.08992 * 109.47148 * 180.02562 * 25 22 21 47 47 H 1.09007 * 109.46914 * 300.00200 * 25 22 21 48 48 H 1.09009 * 109.47337 * 239.99984 * 26 25 22 49 49 H 1.08996 * 109.47160 * 120.00275 * 26 25 22 50 50 H 1.08999 * 109.82967 * 98.14353 * 27 14 13 51 51 H 1.08999 * 109.83261 * 219.11797 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 1.7227 -3.8114 -0.0005 11 6 0.3494 -4.0786 0.6173 12 6 -0.1057 -2.7558 -0.0008 13 6 0.3219 -4.1247 2.1564 14 6 -1.0691 -4.7739 2.4031 15 1 -1.8574 -4.0211 2.4008 16 7 -1.0765 -5.5285 3.6588 17 6 -2.2461 -5.8339 4.2547 18 8 -3.2926 -5.4845 3.7512 19 6 -2.2536 -6.6097 5.5467 20 6 -1.5835 -7.9679 5.3298 21 6 -1.5916 -8.7559 6.6413 22 6 -2.2666 -7.9226 7.7327 23 6 -3.7053 -7.6080 7.3177 24 6 -3.6972 -6.8202 6.0062 25 6 -1.4948 -6.6160 7.9274 26 6 -1.4866 -5.8281 6.6159 27 6 -1.2114 -5.7219 1.1918 28 8 -0.3268 -5.2492 0.1653 29 1 -0.4850 0.8400 0.0004 30 1 2.5561 -4.0359 0.6651 31 1 1.8472 -4.2357 -0.9969 32 1 -0.5333 -2.8599 -0.9980 33 1 -0.7170 -2.1462 0.6647 34 1 0.3689 -3.1219 2.5809 35 1 1.1236 -4.7524 2.5455 36 1 -0.2395 -5.8083 4.0613 37 1 -2.1293 -8.5250 4.5684 38 1 -0.5548 -7.8174 5.0023 39 1 -0.5666 -8.9795 6.9371 40 1 -2.1412 -9.6869 6.5025 41 1 -2.2728 -8.4841 8.6669 42 1 -4.1863 -7.0148 8.0954 43 1 -4.2552 -8.5389 7.1790 44 1 -4.1741 -5.8524 6.1608 45 1 -4.2431 -7.3768 5.2446 46 1 -1.9754 -6.0226 8.7052 47 1 -0.4698 -6.8401 8.2231 48 1 -0.4578 -5.6780 6.2886 49 1 -1.9636 -4.8603 6.7705 50 1 -0.9341 -6.7355 1.4811 51 1 -2.2394 -5.7075 0.8297 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054013054.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:00 Heat of formation + Delta-G solvation = -41.510281 kcal Electronic energy + Delta-G solvation = -30196.481901 eV Core-core repulsion = 26289.487151 eV Total energy + Delta-G solvation = -3906.994749 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.41909 -39.96426 -38.54893 -36.24349 -34.55523 -32.26750 -32.08769 -31.26007 -31.14641 -29.86618 -28.05569 -25.79699 -24.93115 -23.72575 -23.05724 -22.91906 -22.02652 -21.31491 -20.42594 -18.72625 -17.94454 -16.85212 -16.79021 -16.57166 -16.12908 -15.90638 -15.40114 -15.29297 -14.95733 -14.66882 -14.34782 -13.79378 -13.70965 -13.34249 -13.04996 -12.86659 -12.66462 -12.48154 -12.43111 -12.36492 -12.34382 -12.28453 -12.22952 -11.91297 -11.62335 -11.37273 -11.09443 -10.92947 -10.83980 -10.81247 -10.77037 -10.68355 -10.29921 -10.16653 -10.15730 -10.00827 -9.61974 -9.56880 -9.05015 -8.81700 -8.73744 -6.92240 -5.78731 -3.12079 2.57856 3.05205 3.38181 3.42599 3.45103 4.12369 4.19442 4.21590 4.28242 4.48726 4.64290 4.76040 4.83567 4.92693 4.96097 4.97139 5.02993 5.03549 5.10319 5.10784 5.15290 5.22421 5.24273 5.27903 5.35914 5.41743 5.54332 5.61455 5.64395 5.73759 5.83885 5.89564 5.92464 5.95590 5.96950 5.98803 6.02106 6.07325 6.08289 6.15462 6.31139 6.36911 6.48668 6.59072 6.70256 7.03463 7.21428 7.44743 7.50229 7.70910 7.94528 8.18686 9.01722 9.67746 10.55617 11.38263 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.019188 B = 0.002619 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.927355 B =10687.027917 C =11201.991315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.223 4.223 8 H 0.081 0.919 9 N -0.604 5.604 10 C 0.129 3.871 11 C 0.056 3.944 12 C 0.157 3.843 13 C -0.120 4.120 14 C 0.112 3.888 15 H 0.105 0.895 16 N -0.716 5.716 17 C 0.522 3.478 18 O -0.535 6.535 19 C -0.070 4.070 20 C -0.106 4.106 21 C -0.111 4.111 22 C -0.089 4.089 23 C -0.113 4.113 24 C -0.093 4.093 25 C -0.111 4.111 26 C -0.107 4.107 27 C 0.047 3.953 28 O -0.369 6.369 29 H 0.255 0.745 30 H 0.049 0.951 31 H 0.043 0.957 32 H 0.035 0.965 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.400 0.600 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.065 0.935 47 H 0.065 0.935 48 H 0.068 0.932 49 H 0.069 0.931 50 H 0.063 0.937 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.746 -18.672 17.135 25.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.350 4.350 8 H 0.099 0.901 9 N -0.333 5.333 10 C 0.003 3.997 11 C 0.016 3.984 12 C 0.031 3.969 13 C -0.158 4.158 14 C 0.007 3.993 15 H 0.123 0.877 16 N -0.368 5.368 17 C 0.308 3.692 18 O -0.411 6.411 19 C -0.073 4.073 20 C -0.144 4.144 21 C -0.148 4.148 22 C -0.107 4.107 23 C -0.151 4.151 24 C -0.131 4.131 25 C -0.148 4.148 26 C -0.145 4.145 27 C -0.032 4.032 28 O -0.287 6.287 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.094 0.906 34 H 0.117 0.883 35 H 0.094 0.906 36 H 0.235 0.765 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.083 0.917 47 H 0.084 0.916 48 H 0.086 0.914 49 H 0.088 0.912 50 H 0.081 0.919 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.457 -18.154 16.563 24.975 hybrid contribution 0.818 0.911 0.109 1.230 sum -3.639 -17.243 16.672 24.259 Atomic orbital electron populations 1.69821 1.05007 1.25471 1.56234 1.24803 0.95686 0.97559 1.02292 0.86111 0.78579 0.83369 0.77635 1.21557 1.21612 1.20593 1.18967 0.90217 0.81546 1.44292 0.90073 1.45725 1.02251 0.99129 1.86194 1.22548 0.93065 0.86319 0.97743 1.24175 0.95437 0.86483 0.92351 1.22548 0.88275 0.88120 0.97913 1.22952 0.94440 1.02612 0.95846 1.22636 0.99844 0.93775 0.83060 0.87679 1.45984 1.08794 1.57227 1.24783 1.20597 0.83611 0.79332 0.85702 1.90712 1.31601 1.53199 1.65551 1.20705 0.98441 0.95623 0.92562 1.21558 1.00505 0.94050 0.98311 1.21528 1.00840 0.98103 0.94352 1.21068 0.95112 0.96172 0.98364 1.21582 0.96127 1.00159 0.97238 1.21328 0.93605 1.01247 0.96966 1.21528 1.00447 0.95957 0.96911 1.21573 0.99974 0.98644 0.94329 1.23437 0.94749 0.96977 0.87998 1.88305 1.57563 1.43953 1.38864 0.93530 0.93331 0.93900 0.94698 0.90608 0.88287 0.90585 0.76545 0.91327 0.91434 0.91633 0.91701 0.91014 0.91794 0.91827 0.91175 0.91226 0.91671 0.91626 0.91373 0.91225 0.91881 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.23 11.40 55.49 0.63 -26.59 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 3 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.22 -6.20 10.70 -15.06 -0.16 -6.37 16 8 H 0.08 2.17 7.83 -52.49 -0.41 1.75 16 9 N -0.60 -15.55 3.69 -183.21 -0.68 -16.23 16 10 C 0.13 2.73 8.49 -3.38 -0.03 2.70 16 11 C 0.06 1.10 1.47 -90.31 -0.13 0.97 16 12 C 0.16 3.82 6.98 -3.38 -0.02 3.80 16 13 C -0.12 -1.96 6.02 -24.89 -0.15 -2.11 16 14 C 0.11 1.68 3.29 -65.84 -0.22 1.46 16 15 H 0.11 1.83 7.71 -51.93 -0.40 1.43 16 16 N -0.72 -8.45 4.93 -51.78 -0.26 -8.71 16 17 C 0.52 6.64 6.48 -10.98 -0.07 6.57 16 18 O -0.53 -9.00 15.71 5.56 0.09 -8.92 16 19 C -0.07 -0.65 0.61 -155.66 -0.10 -0.75 16 20 C -0.11 -0.81 4.89 -26.73 -0.13 -0.94 16 21 C -0.11 -0.69 5.71 -26.73 -0.15 -0.84 16 22 C -0.09 -0.56 3.19 -90.62 -0.29 -0.85 16 23 C -0.11 -0.81 5.71 -26.73 -0.15 -0.96 16 24 C -0.09 -0.89 4.28 -26.76 -0.11 -1.01 16 25 C -0.11 -0.72 5.71 -26.73 -0.15 -0.88 16 26 C -0.11 -0.87 4.89 -26.71 -0.13 -1.00 16 27 C 0.05 0.73 7.57 37.93 0.29 1.02 16 28 O -0.37 -6.94 11.17 -35.23 -0.39 -7.34 16 29 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.05 0.93 8.11 -51.93 -0.42 0.51 16 31 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.08 1.99 7.16 -51.93 -0.37 1.62 16 34 H 0.10 1.81 8.05 -51.93 -0.42 1.40 16 35 H 0.08 1.05 7.98 -51.93 -0.41 0.63 16 36 H 0.40 3.67 7.34 -40.82 -0.30 3.37 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.46 7.56 -51.93 -0.39 0.06 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 45 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 46 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.07 0.50 7.57 -51.92 -0.39 0.10 16 49 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.06 0.87 8.02 -51.93 -0.42 0.46 16 51 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 388.79 15.07 5.86 5.86 Total: -1.00 -32.36 388.79 -10.57 -42.92 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -8.99 Total: 1.46 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -1.81 Total: 0.54 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: -0.30 Total: -51.53 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.31 Total: -16.25 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.36 -10.57 -42.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054013054.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.413 kcal (2) G-P(sol) polarization free energy of solvation -32.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds