Wall clock time and date at job start Tue Mar 31 2020 19:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99930 * 2 1 4 4 H 1.48501 * 109.46931 * 270.00228 * 3 2 1 5 5 H 1.48494 * 109.46998 * 30.00454 * 3 2 1 6 6 H 1.48503 * 109.46965 * 150.00215 * 3 2 1 7 7 C 1.38815 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00007 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00101 * 359.97438 * 7 2 1 10 10 C 1.47769 * 134.40960 * 180.02562 * 9 7 2 11 11 C 1.52940 * 85.80912 * 156.10522 * 10 9 7 12 12 C 1.47770 * 134.40597 * 0.04028 * 9 7 2 13 13 C 1.54005 * 115.14782 * 266.50189 * 11 10 9 14 14 C 1.55478 * 100.77751 * 194.49506 * 13 11 10 15 15 H 1.08998 * 110.99716 * 274.81078 * 14 13 11 16 16 N 1.46506 * 110.82747 * 151.33130 * 14 13 11 17 17 C 1.34774 * 119.99877 * 160.59510 * 16 14 13 18 18 O 1.21276 * 120.00440 * 0.02562 * 17 16 14 19 19 C 1.50706 * 119.99740 * 180.02562 * 17 16 14 20 20 C 1.52998 * 109.46758 * 299.99916 * 19 17 16 21 21 C 1.53006 * 109.47091 * 180.02562 * 20 19 17 22 22 C 1.53001 * 109.46792 * 359.97438 * 21 20 19 23 23 C 1.53001 * 109.47268 * 60.00031 * 22 21 20 24 24 C 1.52996 * 109.47206 * 300.00117 * 23 22 21 25 25 C 1.53003 * 109.47364 * 300.00012 * 22 21 20 26 26 C 1.52996 * 109.46848 * 60.00043 * 25 22 21 27 27 C 1.54468 * 102.37247 * 33.11030 * 14 13 11 28 28 O 1.42543 * 116.18715 * 141.02815 * 11 10 9 29 29 H 0.96998 * 120.00336 * 359.97438 * 1 2 3 30 30 H 1.08998 * 113.81713 * 41.87840 * 10 9 7 31 31 H 1.09005 * 113.92837 * 270.33798 * 10 9 7 32 32 H 1.08996 * 113.82244 * 89.67110 * 12 9 7 33 33 H 1.09002 * 113.82203 * 318.11514 * 12 9 7 34 34 H 1.08996 * 111.15537 * 76.61087 * 13 11 10 35 35 H 1.09001 * 111.15388 * 312.37187 * 13 11 10 36 36 H 0.96996 * 119.99556 * 340.59852 * 16 14 13 37 37 H 1.08991 * 109.47642 * 299.99917 * 20 19 17 38 38 H 1.09006 * 109.47317 * 60.00326 * 20 19 17 39 39 H 1.09004 * 109.46708 * 240.00376 * 21 20 19 40 40 H 1.08993 * 109.47332 * 119.99628 * 21 20 19 41 41 H 1.09002 * 109.46916 * 179.97438 * 22 21 20 42 42 H 1.08992 * 109.47210 * 179.97438 * 23 22 21 43 43 H 1.09001 * 109.47028 * 59.99783 * 23 22 21 44 44 H 1.08996 * 109.47160 * 239.99940 * 24 23 22 45 45 H 1.08994 * 109.47547 * 119.99397 * 24 23 22 46 46 H 1.08992 * 109.47148 * 180.02562 * 25 22 21 47 47 H 1.09007 * 109.46914 * 300.00200 * 25 22 21 48 48 H 1.09009 * 109.47337 * 239.99984 * 26 25 22 49 49 H 1.08996 * 109.47160 * 120.00275 * 26 25 22 50 50 H 1.08999 * 109.82967 * 98.14353 * 27 14 13 51 51 H 1.08999 * 109.83261 * 219.11797 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 1.7227 -3.8114 -0.0005 11 6 0.3494 -4.0786 0.6173 12 6 -0.1057 -2.7558 -0.0008 13 6 0.3219 -4.1247 2.1564 14 6 -1.0691 -4.7739 2.4031 15 1 -1.8574 -4.0211 2.4008 16 7 -1.0765 -5.5285 3.6588 17 6 -2.2461 -5.8339 4.2547 18 8 -3.2926 -5.4845 3.7512 19 6 -2.2536 -6.6097 5.5467 20 6 -1.5835 -7.9679 5.3298 21 6 -1.5916 -8.7559 6.6413 22 6 -2.2666 -7.9226 7.7327 23 6 -3.7053 -7.6080 7.3177 24 6 -3.6972 -6.8202 6.0062 25 6 -1.4948 -6.6160 7.9274 26 6 -1.4866 -5.8281 6.6159 27 6 -1.2114 -5.7219 1.1918 28 8 -0.3268 -5.2492 0.1653 29 1 -0.4850 0.8400 0.0004 30 1 2.5561 -4.0359 0.6651 31 1 1.8472 -4.2357 -0.9969 32 1 -0.5333 -2.8599 -0.9980 33 1 -0.7170 -2.1462 0.6647 34 1 0.3689 -3.1219 2.5809 35 1 1.1236 -4.7524 2.5455 36 1 -0.2395 -5.8083 4.0613 37 1 -2.1293 -8.5250 4.5684 38 1 -0.5548 -7.8174 5.0023 39 1 -0.5666 -8.9795 6.9371 40 1 -2.1412 -9.6869 6.5025 41 1 -2.2728 -8.4841 8.6669 42 1 -4.1863 -7.0148 8.0954 43 1 -4.2552 -8.5389 7.1790 44 1 -4.1741 -5.8524 6.1608 45 1 -4.2431 -7.3768 5.2446 46 1 -1.9754 -6.0226 8.7052 47 1 -0.4698 -6.8401 8.2231 48 1 -0.4578 -5.6780 6.2886 49 1 -1.9636 -4.8603 6.7705 50 1 -0.9341 -6.7355 1.4811 51 1 -2.2394 -5.7075 0.8297 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054013054.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:59 Heat of formation + Delta-G solvation = -62.074443 kcal Electronic energy + Delta-G solvation = -30197.373630 eV Core-core repulsion = 26289.487151 eV Total energy + Delta-G solvation = -3907.886478 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.25651 -41.39183 -39.61530 -37.90276 -35.81484 -34.15361 -33.07359 -31.82399 -31.79433 -31.09618 -29.79823 -27.52408 -26.75049 -24.63341 -23.90184 -23.59189 -23.56308 -22.42798 -21.47273 -20.35729 -18.88220 -18.73406 -17.80780 -17.43069 -17.20298 -16.80594 -16.66600 -16.55453 -16.38620 -16.11969 -15.59792 -15.45544 -15.03022 -14.47892 -14.29203 -13.94751 -13.92028 -13.72823 -13.43486 -13.07032 -13.02936 -12.98469 -12.95117 -12.93839 -12.87401 -12.82568 -12.77689 -12.67605 -12.60227 -12.36335 -12.00783 -11.79088 -11.52672 -11.47476 -11.33908 -10.89809 -10.77060 -10.72409 -10.56702 -10.37921 -10.19593 -8.99679 -7.92688 -5.28331 1.45496 1.47980 1.54943 1.56678 1.99512 2.42784 2.81741 3.17510 3.32497 3.44505 3.50314 3.57672 3.59935 3.69624 3.74380 4.00070 4.03092 4.11156 4.21789 4.34380 4.36351 4.43168 4.44172 4.46325 4.47639 4.49370 4.61586 4.65804 4.73095 4.74526 4.79920 4.86050 4.90880 5.01557 5.06704 5.12426 5.12562 5.16572 5.19189 5.27975 5.33241 5.36314 5.36752 5.40356 5.46449 5.47192 5.49332 5.49590 5.84496 6.13545 6.47835 6.86567 7.18483 7.56671 8.50051 9.24297 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.019188 B = 0.002619 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.927355 B =10687.027917 C =11201.991315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.068 4.068 3 Si 0.982 3.018 4 H -0.289 1.289 5 H -0.296 1.296 6 H -0.262 1.262 7 C -0.232 4.232 8 H 0.092 0.908 9 N -0.628 5.628 10 C 0.131 3.869 11 C 0.077 3.923 12 C 0.150 3.850 13 C -0.107 4.107 14 C 0.124 3.876 15 H 0.073 0.927 16 N -0.700 5.700 17 C 0.518 3.482 18 O -0.582 6.582 19 C -0.063 4.063 20 C -0.106 4.106 21 C -0.107 4.107 22 C -0.087 4.087 23 C -0.110 4.110 24 C -0.095 4.095 25 C -0.108 4.108 26 C -0.108 4.108 27 C 0.047 3.953 28 O -0.378 6.378 29 H 0.248 0.752 30 H 0.079 0.921 31 H 0.045 0.955 32 H 0.007 0.993 33 H 0.046 0.954 34 H 0.077 0.923 35 H 0.116 0.884 36 H 0.418 0.582 37 H 0.059 0.941 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.047 0.953 45 H 0.053 0.947 46 H 0.065 0.935 47 H 0.082 0.918 48 H 0.081 0.919 49 H 0.051 0.949 50 H 0.093 0.907 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.215 -20.935 19.378 28.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.261 4.261 3 Si 0.810 3.190 4 H -0.216 1.216 5 H -0.222 1.222 6 H -0.186 1.186 7 C -0.360 4.360 8 H 0.110 0.890 9 N -0.357 5.357 10 C 0.007 3.993 11 C 0.036 3.964 12 C 0.024 3.976 13 C -0.145 4.145 14 C 0.017 3.983 15 H 0.091 0.909 16 N -0.353 5.353 17 C 0.306 3.694 18 O -0.461 6.461 19 C -0.066 4.066 20 C -0.143 4.143 21 C -0.145 4.145 22 C -0.105 4.105 23 C -0.148 4.148 24 C -0.133 4.133 25 C -0.145 4.145 26 C -0.146 4.146 27 C -0.031 4.031 28 O -0.296 6.296 29 H 0.057 0.943 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.025 0.975 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.134 0.866 36 H 0.256 0.744 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.066 0.934 45 H 0.071 0.929 46 H 0.084 0.916 47 H 0.101 0.899 48 H 0.100 0.900 49 H 0.070 0.930 50 H 0.111 0.889 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.874 -20.468 18.826 27.873 hybrid contribution -0.049 1.577 -0.651 1.707 sum -1.922 -18.891 18.175 26.285 Atomic orbital electron populations 1.70038 1.06681 1.25699 1.57925 1.25702 0.96517 1.01122 1.02731 0.85025 0.77846 0.78736 0.77403 1.21576 1.22229 1.18592 1.19428 0.90983 0.82618 1.42979 0.88995 1.46031 1.02868 1.00614 1.86174 1.22685 0.94588 0.83490 0.98572 1.23719 0.93953 0.84587 0.94153 1.22436 0.87792 0.91084 0.96316 1.22836 0.96241 1.02375 0.93051 1.22230 0.98243 0.93310 0.84476 0.90867 1.45784 1.09625 1.56371 1.23536 1.21341 0.82872 0.78690 0.86456 1.90697 1.33363 1.55100 1.66985 1.20707 0.98735 0.96433 0.90715 1.21602 1.00850 0.92627 0.99261 1.21538 1.01937 0.97860 0.93150 1.21096 0.93966 0.96265 0.99213 1.21575 0.97484 1.00035 0.95669 1.21320 0.93637 1.00281 0.98080 1.21536 1.01548 0.95765 0.95687 1.21614 1.00129 0.97930 0.94915 1.23571 0.93903 0.98301 0.87348 1.88287 1.57957 1.43023 1.40342 0.94295 0.90262 0.93714 0.97524 0.93596 0.90466 0.86585 0.74407 0.92209 0.89901 0.89963 0.91192 0.89262 0.91493 0.91096 0.93422 0.92857 0.91586 0.89950 0.90048 0.92965 0.88850 0.92129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.81 11.40 21.65 0.25 -58.56 16 2 C -0.07 -3.88 5.50 84.86 0.47 -3.42 16 3 Si 0.98 45.73 29.55 68.60 2.03 47.76 16 4 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 5 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 6 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.23 -12.96 10.70 84.03 0.90 -12.06 16 8 H 0.09 4.80 7.83 -2.91 -0.02 4.78 16 9 N -0.63 -32.65 3.69 -739.68 -2.73 -35.38 16 10 C 0.13 5.36 8.49 86.11 0.73 6.09 16 11 C 0.08 2.99 1.47 -10.44 -0.02 2.97 16 12 C 0.15 7.62 6.98 86.11 0.60 8.23 16 13 C -0.11 -3.35 6.02 31.79 0.19 -3.15 16 14 C 0.12 3.68 3.29 46.34 0.15 3.83 16 15 H 0.07 2.69 7.71 -2.39 -0.02 2.67 16 16 N -0.70 -15.50 4.93 -436.14 -2.15 -17.65 16 17 C 0.52 13.08 6.48 87.66 0.57 13.65 16 18 O -0.58 -20.46 15.71 -3.02 -0.05 -20.51 16 19 C -0.06 -1.09 0.61 -52.93 -0.03 -1.13 16 20 C -0.11 -1.32 4.89 30.60 0.15 -1.17 16 21 C -0.11 -0.94 5.71 30.60 0.17 -0.77 16 22 C -0.09 -0.82 3.19 -10.79 -0.03 -0.85 16 23 C -0.11 -1.41 5.71 30.59 0.17 -1.23 16 24 C -0.09 -1.82 4.28 30.58 0.13 -1.69 16 25 C -0.11 -1.08 5.71 30.59 0.17 -0.91 16 26 C -0.11 -1.54 4.89 30.61 0.15 -1.39 16 27 C 0.05 1.41 7.57 72.48 0.55 1.96 16 28 O -0.38 -13.91 11.17 -148.98 -1.66 -15.57 16 29 H 0.25 14.90 8.31 -92.71 -0.77 14.12 16 30 H 0.08 2.77 8.11 -2.39 -0.02 2.75 16 31 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 32 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.05 2.58 7.16 -2.39 -0.02 2.56 16 34 H 0.08 2.82 8.05 -2.39 -0.02 2.80 16 35 H 0.12 2.73 7.98 -2.39 -0.02 2.71 16 36 H 0.42 6.30 7.34 -92.71 -0.68 5.62 16 37 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.08 0.79 7.56 -2.38 -0.02 0.77 16 39 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 40 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 45 H 0.05 1.17 8.10 -2.39 -0.02 1.15 16 46 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 48 H 0.08 0.94 7.57 -2.38 -0.02 0.92 16 49 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 50 H 0.09 2.32 8.02 -2.39 -0.02 2.30 16 51 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -73.73 388.79 0.94 -72.79 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.23 Total: 18.18 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 5.03 Total: 8.96 kcal Atomic # 7 Polarization: -106.96 SS G_CDS: -4.63 Total: -111.59 kcal Atomic # 8 Polarization: -34.38 SS G_CDS: -1.71 Total: -36.09 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -73.73 0.94 -72.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054013054.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.713 kcal (2) G-P(sol) polarization free energy of solvation -73.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds