Wall clock time and date at job start Tue Mar 31 2020 19:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 119.99968 * 2 1 4 4 H 1.48507 * 109.47037 * 239.99994 * 3 2 1 5 5 H 1.48501 * 109.46921 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47520 * 119.99944 * 3 2 1 7 7 C 1.38816 * 119.99953 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99525 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00404 * 0.02562 * 7 2 1 10 10 C 1.47782 * 134.40485 * 179.97438 * 9 7 2 11 11 C 1.52891 * 85.78300 * 156.16359 * 10 9 7 12 12 C 1.47786 * 134.39720 * 0.04798 * 9 7 2 13 13 C 1.53465 * 115.57453 * 140.26630 * 11 10 9 14 14 C 1.54737 * 103.72177 * 107.30541 * 13 11 10 15 15 H 1.09004 * 110.50868 * 117.88187 * 14 13 11 16 16 N 1.46501 * 110.50755 * 240.44748 * 14 13 11 17 17 C 1.34771 * 120.00156 * 204.99804 * 16 14 13 18 18 O 1.21285 * 120.00050 * 0.02562 * 17 16 14 19 19 C 1.50699 * 120.00188 * 180.02562 * 17 16 14 20 20 C 1.52993 * 109.47181 * 300.00247 * 19 17 16 21 21 C 1.53004 * 109.46939 * 179.97438 * 20 19 17 22 22 C 1.52995 * 109.47405 * 0.02562 * 21 20 19 23 23 C 1.53000 * 109.47177 * 59.99348 * 22 21 20 24 24 C 1.52996 * 109.47305 * 300.00472 * 23 22 21 25 25 C 1.53001 * 109.46901 * 299.99950 * 22 21 20 26 26 C 1.52996 * 109.47247 * 59.99732 * 25 22 21 27 27 C 1.54541 * 104.07255 * 359.23702 * 14 13 11 28 28 O 1.43247 * 115.84298 * 265.48817 * 11 10 9 29 29 H 0.97000 * 120.00237 * 0.02562 * 1 2 3 30 30 H 1.09006 * 113.81943 * 41.95426 * 10 9 7 31 31 H 1.08994 * 113.93759 * 270.39231 * 10 9 7 32 32 H 1.09006 * 113.82136 * 89.62488 * 12 9 7 33 33 H 1.09002 * 113.82320 * 318.05491 * 12 9 7 34 34 H 1.08997 * 110.57405 * 348.74493 * 13 11 10 35 35 H 1.09002 * 110.57204 * 225.86474 * 13 11 10 36 36 H 0.96999 * 119.99653 * 25.00434 * 16 14 13 37 37 H 1.09000 * 109.47230 * 299.99682 * 20 19 17 38 38 H 1.09006 * 109.47126 * 60.00137 * 20 19 17 39 39 H 1.08998 * 109.47491 * 239.99706 * 21 20 19 40 40 H 1.09002 * 109.46452 * 120.00254 * 21 20 19 41 41 H 1.09002 * 109.47604 * 179.97438 * 22 21 20 42 42 H 1.08999 * 109.47248 * 180.02562 * 23 22 21 43 43 H 1.09004 * 109.47412 * 60.00375 * 23 22 21 44 44 H 1.09004 * 109.47090 * 239.99529 * 24 23 22 45 45 H 1.09002 * 109.47797 * 120.00232 * 24 23 22 46 46 H 1.09002 * 109.47168 * 180.02562 * 25 22 21 47 47 H 1.08998 * 109.46996 * 299.99826 * 25 22 21 48 48 H 1.09006 * 109.46876 * 240.00030 * 26 25 22 49 49 H 1.09003 * 109.47104 * 120.00806 * 26 25 22 50 50 H 1.09002 * 110.33136 * 142.52449 * 27 14 13 51 51 H 1.09008 * 110.32594 * 264.63913 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 1.7230 -3.8115 0.0005 11 6 0.3494 -4.0783 0.6167 12 6 -0.1058 -2.7557 -0.0008 13 6 -0.3736 -5.3318 0.1060 14 6 -0.2749 -6.3212 1.2916 15 1 -1.2687 -6.5766 1.6596 16 7 0.4495 -7.5303 0.8922 17 6 0.2344 -8.6907 1.5429 18 8 -0.5594 -8.7341 2.4590 19 6 0.9800 -9.9343 1.1325 20 6 0.6583 -10.2636 -0.3266 21 6 1.4159 -11.5258 -0.7435 22 6 2.2421 -12.0384 0.4378 23 6 1.3115 -12.3649 1.6075 24 6 0.5540 -11.1027 2.0244 25 6 3.2414 -10.9620 0.8664 26 6 2.4839 -9.6998 1.2833 27 6 0.5166 -5.5421 2.3662 28 8 0.3093 -4.1468 2.0470 29 1 -0.4850 0.8400 -0.0004 30 1 2.5557 -4.0361 0.6672 31 1 1.8485 -4.2356 -0.9956 32 1 -0.5327 -2.8595 -0.9984 33 1 -0.7174 -2.1464 0.6646 34 1 0.1315 -5.7344 -0.7720 35 1 -1.4161 -5.1074 -0.1199 36 1 1.0841 -7.4955 0.1594 37 1 -0.4135 -10.4307 -0.4336 38 1 0.9617 -9.4316 -0.9622 39 1 2.0786 -11.2933 -1.5771 40 1 0.7039 -12.2927 -1.0484 41 1 2.7815 -12.9379 0.1410 42 1 1.9001 -12.7297 2.4493 43 1 0.5995 -13.1318 1.3023 44 1 0.7828 -10.8683 3.0641 45 1 -0.5178 -11.2699 1.9172 46 1 3.8304 -11.3273 1.7077 47 1 3.9044 -10.7293 0.0331 48 1 2.7872 -8.8676 0.6479 49 1 2.7129 -9.4653 2.3229 50 1 0.1271 -5.7652 3.3595 51 1 1.5763 -5.7915 2.3110 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054013055.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:05 Heat of formation + Delta-G solvation = -38.256093 kcal Electronic energy + Delta-G solvation = -30176.029729 eV Core-core repulsion = 26269.176091 eV Total energy + Delta-G solvation = -3906.853637 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.46326 -40.02290 -38.58953 -36.12611 -34.50429 -32.30533 -32.05537 -31.28500 -31.17811 -30.01586 -28.07250 -25.81679 -24.93908 -23.75060 -23.08416 -22.95236 -22.10995 -21.03577 -20.51857 -19.04404 -17.94892 -16.87552 -16.72592 -16.61511 -16.16468 -15.83702 -15.47510 -15.11691 -14.99568 -14.71099 -14.42783 -13.96245 -13.37356 -13.35510 -13.16738 -13.01800 -12.77970 -12.51145 -12.46719 -12.39451 -12.38818 -12.31612 -12.23854 -11.97600 -11.63249 -11.57529 -11.22492 -11.07269 -10.82720 -10.79859 -10.79535 -10.48142 -10.20438 -10.19901 -10.18462 -9.75406 -9.63802 -9.57690 -9.12399 -8.93433 -8.78029 -6.87127 -5.73514 -3.05529 2.51785 3.01872 3.42219 3.45935 3.47511 4.09414 4.18296 4.19782 4.36219 4.47474 4.65068 4.73335 4.80977 4.89615 4.94100 4.94623 4.99213 5.00792 5.01305 5.05171 5.07034 5.07308 5.24251 5.25583 5.36315 5.45075 5.58655 5.62436 5.62953 5.71008 5.79984 5.81059 5.88350 5.89577 5.94512 5.95027 5.96198 6.03131 6.03681 6.03925 6.13055 6.26989 6.36154 6.55306 6.61900 6.92534 7.20463 7.39671 7.48948 7.70065 8.00683 8.12648 9.06657 9.73375 10.59886 11.43956 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.025988 B = 0.002429 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.162688 B =11522.610128 C =11904.900298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.913 3.087 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.223 4.223 8 H 0.079 0.921 9 N -0.604 5.604 10 C 0.104 3.896 11 C 0.056 3.944 12 C 0.176 3.824 13 C -0.146 4.146 14 C 0.112 3.888 15 H 0.101 0.899 16 N -0.716 5.716 17 C 0.523 3.477 18 O -0.539 6.539 19 C -0.070 4.070 20 C -0.106 4.106 21 C -0.111 4.111 22 C -0.089 4.089 23 C -0.113 4.113 24 C -0.093 4.093 25 C -0.111 4.111 26 C -0.107 4.107 27 C 0.036 3.964 28 O -0.329 6.329 29 H 0.255 0.745 30 H 0.046 0.954 31 H 0.040 0.960 32 H 0.042 0.958 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.400 0.600 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.064 0.936 47 H 0.066 0.934 48 H 0.068 0.932 49 H 0.068 0.932 50 H 0.090 0.910 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.740 -26.994 -1.035 27.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.350 4.350 8 H 0.097 0.903 9 N -0.330 5.330 10 C -0.022 4.022 11 C 0.015 3.985 12 C 0.051 3.949 13 C -0.185 4.185 14 C 0.007 3.993 15 H 0.119 0.881 16 N -0.369 5.369 17 C 0.309 3.691 18 O -0.415 6.415 19 C -0.074 4.074 20 C -0.144 4.144 21 C -0.149 4.149 22 C -0.107 4.107 23 C -0.151 4.151 24 C -0.131 4.131 25 C -0.149 4.149 26 C -0.145 4.145 27 C -0.043 4.043 28 O -0.247 6.247 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.236 0.764 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.084 0.916 48 H 0.087 0.913 49 H 0.087 0.913 50 H 0.108 0.892 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.150 -26.440 -0.207 26.528 hybrid contribution 0.851 0.829 -0.585 1.324 sum 3.001 -25.610 -0.792 25.798 Atomic orbital electron populations 1.69791 1.05010 1.25498 1.56521 1.24773 0.95687 0.97505 1.02405 0.86188 0.78468 0.83135 0.77880 1.21234 1.21527 1.21071 1.18933 0.90181 0.81864 1.44023 0.90326 1.45812 1.02014 0.99064 1.86095 1.22938 0.95116 0.87344 0.96821 1.23780 0.97095 0.95889 0.81728 1.22207 0.88737 0.87362 0.96629 1.23033 1.02863 0.95323 0.97254 1.22460 0.96991 0.84254 0.95636 0.88098 1.46115 1.44887 1.08816 1.37053 1.20599 0.82172 0.84429 0.81938 1.90697 1.35860 1.85624 1.29346 1.20705 0.95996 0.93283 0.97383 1.21558 1.00907 0.98595 0.93369 1.21529 0.98801 0.97004 0.97525 1.21067 0.96137 0.98169 0.95350 1.21583 0.98299 0.97353 0.97872 1.21343 1.00366 0.92517 0.98863 1.21528 0.97323 0.94770 1.01243 1.21558 0.92130 0.98481 1.02352 1.23784 0.99061 0.82670 0.98757 1.89121 1.92545 1.22789 1.20220 0.93547 0.93579 0.94228 0.94083 0.89971 0.90065 0.89425 0.76441 0.91350 0.91372 0.91571 0.91717 0.90993 0.91804 0.91828 0.91241 0.91277 0.91678 0.91564 0.91321 0.91284 0.89200 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.82 11.40 55.49 0.63 -27.19 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 7 C -0.22 -6.40 10.70 -15.06 -0.16 -6.56 16 8 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 9 N -0.60 -15.84 3.71 -183.57 -0.68 -16.52 16 10 C 0.10 2.12 8.44 -3.40 -0.03 2.10 16 11 C 0.06 1.08 1.28 -90.65 -0.12 0.96 16 12 C 0.18 4.20 7.02 -3.39 -0.02 4.17 16 13 C -0.15 -2.05 6.25 -25.58 -0.16 -2.21 16 14 C 0.11 1.50 3.49 -66.21 -0.23 1.27 16 15 H 0.10 1.45 7.55 -51.93 -0.39 1.06 16 16 N -0.72 -7.76 4.88 -52.14 -0.25 -8.01 16 17 C 0.52 6.13 6.48 -10.99 -0.07 6.06 16 18 O -0.54 -8.38 15.63 5.55 0.09 -8.29 16 19 C -0.07 -0.61 0.61 -155.66 -0.10 -0.71 16 20 C -0.11 -0.77 4.89 -26.73 -0.13 -0.90 16 21 C -0.11 -0.66 5.71 -26.73 -0.15 -0.81 16 22 C -0.09 -0.53 3.20 -90.62 -0.29 -0.82 16 23 C -0.11 -0.76 5.71 -26.73 -0.15 -0.91 16 24 C -0.09 -0.82 4.28 -26.71 -0.11 -0.94 16 25 C -0.11 -0.69 5.71 -26.73 -0.15 -0.84 16 26 C -0.11 -0.81 4.88 -26.76 -0.13 -0.94 16 27 C 0.04 0.56 7.37 37.97 0.28 0.84 16 28 O -0.33 -6.73 11.44 -35.23 -0.40 -7.14 16 29 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.04 0.73 7.95 -51.93 -0.41 0.32 16 32 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.08 2.24 7.19 -51.93 -0.37 1.86 16 34 H 0.08 0.97 7.39 -51.93 -0.38 0.59 16 35 H 0.09 1.20 8.12 -51.93 -0.42 0.78 16 36 H 0.40 3.48 7.21 -40.82 -0.29 3.19 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.44 7.56 -51.93 -0.39 0.05 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 45 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 46 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.07 0.48 7.56 -51.93 -0.39 0.09 16 49 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 51 H 0.06 0.85 8.06 -51.92 -0.42 0.43 16 LS Contribution 388.10 15.07 5.85 5.85 Total: -1.00 -33.86 388.10 -10.56 -44.42 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -8.94 Total: -0.09 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -1.83 Total: -0.55 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: -0.30 Total: -51.72 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -0.32 Total: -15.43 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.86 -10.56 -44.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054013055.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.164 kcal (2) G-P(sol) polarization free energy of solvation -33.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds